Information report for AT2G25900
Gene Details
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Functional Descriptions
- PO:0009006 — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009029 — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
- PO:0009052 — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
- PO:0020030 — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
- PO:0020038 — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
- PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
- PO:0020137 — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
- PO:0020003 — plant ovule — óvulo vegetal (Spanish, exact), 胚珠 (Japanese, exact), Poaceae ovule (narrow), Zea ovule (narrow)
Functional Keywords
Literature and News
- Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. DOI: 10.1126/science.290.5499.2105 ; PMID: 11118137
- Transcriptome analysis of Arabidopsis colonized by a plant-growth promoting rhizobacterium reveals a general effect on disease resistance. DOI: 10.1046/j.1365-313x.2003.01867.x ; PMID: 14535883
- Overexpression of spermidine synthase enhances tolerance to multiple environmental stresses and up-regulates the expression of various stress-regulated genes in transgenic Arabidopsis thaliana. DOI: 10.1093/pcp/pch083 ; PMID: 15215506
- Transcriptome profiling of the response of Arabidopsis suspension culture cells to Suc starvation. DOI: 10.1104/pp.104.044362 ; PMID: 15310832
- Chromatin and siRNA pathways cooperate to maintain DNA methylation of small transposable elements in Arabidopsis. DOI: 10.1186/gb-2005-6-11-r90 ; PMID: 16277745
- Systemic signalling of environmental cues in Arabidopsis leaves. DOI: 10.1093/jxb/erj033 ; PMID: 16330523
- Calmodulin interacts with and regulates the RNA-binding activity of an Arabidopsis polyadenylation factor subunit. DOI: 10.1104/pp.105.070672 ; PMID: 16500995
- The Arabidopsis root hair cell wall formation mutant lrx1 is suppressed by mutations in the RHM1 gene encoding a UDP-L-rhamnose synthase. DOI: 10.1105/tpc.105.038653 ; PMID: 16766693
- Oviposition by pierid butterflies triggers defense responses in Arabidopsis. DOI: 10.1104/pp.106.090837 ; PMID: 17142483
- Temporal responses of transcripts, enzyme activities and metabolites after adding sucrose to carbon-deprived Arabidopsis seedlings. DOI: 10.1111/j.1365-313X.2006.02979.x ; PMID: 17217462
- Global expression profiling applied to the analysis of Arabidopsis stamen development. DOI: 10.1104/pp.107.104422 ; PMID: 17905860
- Light has a specific role in modulating Arabidopsis gene expression at low temperature. DOI: 10.1186/1471-2229-8-13 ; PMID: 18230142
- Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice. DOI: 10.1186/1471-2164-9-44 ; PMID: 18221561
- Global transcript levels respond to small changes of the carbon status during progressive exhaustion of carbohydrates in Arabidopsis rosettes. DOI: 10.1104/pp.107.115592 ; PMID: 18305208
- Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. DOI: 10.1104/pp.108.121038 ; PMID: 18650403
- Expression-based discovery of candidate ovule development regulators through transcriptional profiling of ovule mutants. DOI: 10.1186/1471-2229-9-29 ; PMID: 19291320
- The Arabidopsis tandem zinc finger protein AtTZF1 traffics between the nucleus and cytoplasmic foci and binds both DNA and RNA. DOI: 10.1104/pp.109.145656 ; PMID: 19897605
- AtTZF gene family localizes to cytoplasmic foci. DOI: 10.4161/psb.5.2.10988 ; PMID: 20173417
- and GA-mediated growth, stress and gene expression responses. DOI: 10.1111/j.1365-313X.2010.04419.x ; PMID: 21223390
- Can AtTZF1 act as a transcriptional activator or repressor in plants? DOI: 10.4161/psb.6.5.15104 ; PMID: 21455027
- The Arabidopsis tandem CCCH zinc finger proteins AtTZF4, 5 and 6 are involved in and gibberellic acid-mediated regulation of seed germination. DOI: 10.1111/pce.12084 ; PMID: 23421766
- Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. DOI: 10.1186/1471-2229-13-229 ; PMID: 24377444
- The Arabidopsis thaliana tandem zinc finger 1 (AtTZF1) protein in RNA binding and decay. DOI: 10.1111/tpj.12485 ; PMID: 24635033
- Endogenous Arabidopsis messenger RNAs transported to distant tissues. DOI: 10.1038/nplants.2015.25 ; PMID: 27247031
- The CCCH zinc finger protein gene AtZFP1 improves salt resistance in Arabidopsis thaliana. DOI: 10.1007/s11103-014-0226-5 ; PMID: 25074582
- PRR5, 7 and 9 positively modulate TOR signaling-mediated root cell proliferation by repressing TANDEM ZINC FINGER 1 in Arabidopsis. DOI: 10.1093/nar/gkz191 ; PMID: 30892623
- Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. DOI: 10.1126/science.290.5499.2105 ; PMID: 11118137
Gene Resources
- UniProt: A0A7G2EF04
- EMBL: LR881467
- AlphaFoldDB: A0A7G2EF04
- EnsemblPlants: AT2G25900.1, AT2G25900.2
- Gramene: AT2G25900.1, AT2G25900.2
- KEGG: ath:AT2G25900
- Orthologous matrix: PHPTIHI
- ExpressionAtlas: AT2G25900
- InterPro: IPR000571, IPR041367, IPR045234
- PANTHER: PTHR14493, PTHR14493:SF147
- PROSITE: PS50103
- Gene3D: 3.30.1370.210
Homologs
- Gossypium arboreum Cotton_A_11892_BGI-A2_v1.0, Cotton_A_30952_BGI-A2_v1.0
- Gossypium hirsutum Gh_A08G2230, Gh_D05G0463, Gh_A05G0346, Gh_D08G2596
- Sesamum indicum XP_011081722.1
Sequences
cDNA Sequence
- >AT2G25900.1
ATTTTATGGATAAAGAAAAAATATTTTTATTTTGTTTTATTATTCTCTTTTAAAGTTAAAGACTTTAGGAAAAAAACAAAAGAAAAAAAGTAAATGGAGAGAAAAAAGCTTTTAAAACTTTAAAAATTAATAAAGTTTTAAAAAAAAAAAAAAAAAAAAAAAGACGAACATGAAGGGGAAAAAAACAAAAGACGAACAAAAATTGGAGATTTTTTCTTACACGTGTCATCATCTGCAGATTTGCGCTTATTAATTGTTTACCGTACGGTATTGTGGATAGGGTCAAGATTTTCATAACTTTACCGTAGTTAATATTTGACCCAACCATGGTTAAAATAAAGCAGTTTATATCACAGACACACACCTCTCTCTCTTCTAGACTCACTAAACAAAAATGATGATCGGCGAAAATAAAAACCGGCCACATCCAACGATCCATATCCCTCAATGGGATCAAATCAACGATCCAACGGCCACAATCTCTTCACCATTCTCTTCCGTCAACCTTAACAGCGTTAACGACTACCCACACTCTCCGTCACCGTATCTCGACTCCTTCGCTTCTCTCTTCCGTTACCTCCCGTCAAACGAGTTAACAAACGATTCAGACTCATCAAGTGGCGACGAGTCATCACCACTCACCGACTCATTCTCCTCCGACGAGTTTCGCATCTACGAGTTCAAAATCCGGCGATGCGCTCGAGGTCGATCTCATGATTGGACGGAGTGTCCGTTCGCACATCCCGGAGAAAAAGCTCGACGACGTGATCCGAGAAAGTTTCATTACTCCGGCACCGCTTGTCCTGAGTTTCGTAAAGGAAGTTGTAGAAGAGGTGATTCGTGTGAGTTCTCTCATGGAGTTTTCGAGTGTTGGCTCCATCCTTCTCGTTACCGTACTCAGCCGTGTAAAGACGGAACTAGCTGCCGGAGAAGAATCTGTTTCTTCGCTCATACGACGGAGCAGTTACGTGTATTACCTTGTTCGTTAGATCCAGATCTTGGATTCTTCTCAGGATTAGCTACTTCTCCGACTTCGATTCTTGTTTCTCCTTCGTTTTCACCACCGTCGGAATCTCCGCCGCTTTCTCCGAGTACCGGTGAACTTATTGCGTCGATGAGGAAAATGCAATTGAACGGAGGTGGTTGTTCGTGGAGTTCTCCGATGAGATCTGCAGTTAGGTTACCTTTTTCGTCGTCTCTGCGTCCGATTCAGGCGGCAACGTGGCCGAGGATAAGAGAGTTTGAGATCGAAGAAGCTCCGGCGATGGAATTTGTGGAATCTGGGAAAGAGCTGAGAGCGGAGATGTATGCAAGACTCAGTAGAGAGAACTCACTCGGTTGAGTCGACTTGGATCGAGTCTTTGATGACGTGGCGACTCGATCTGATTTTGTGAATATTTTAGAGATTTTTAAGGTGTTGTGGATAAATGACGTGGCGGGTCGATCTTAGTGACGGTACAATCGGACGATGAAGAAAAAAGCGTTAAGAGTAACAAAAAAAGGAAGAATTTGTAAAGAGATGATAATGAGAGAATTTGAGAGCTATTCTTCTGGCTTTTTTCTCTGCAGTTTTTTTTATTGTTTTCGTTATTTTCTTGTTTTTATTTTGGTTTTCGGCTTTATTTTGTTTGTTGTTTATTAATGTTATATCATTTTGTAATTAGTTCTCAAATGTATTTGGATAACATCTTAGTTTGAGACTTTAGAAAAGAACATTTCATTTGTTGTTTCCTTCTTATCGATTTCGTTGTTATAATAGTAAGAGGATATAAATATTTTTTGTTGGCCTGTTCTTTTTCCAAACGCTGCGATCATATCCAGCGACCAAAAAAAC - >AT2G25900.2
ATTTTATGGATAAAGAAAAAATATTTTTATTTTGTTTTATTATTCTCTTTTAAAGTTAAAGACTTTAGGAAAAAAACAAAAGAAAAAAAGTAAATGGAGAGAAAAAAGCTTTTAAAACTTTAAAAATTAATAAAGTTTTAAAAAAAAAAAAAAAAAAAAAAAGACGAACATGAAGGGGAAAAAAACAAAAGACGAACAAAAATTGGAGATTTTTTCTTACACGTGTCATCATCTGCAGATTTGCGCTTATTAATTGTTTACCGTACGGTATTGTGGATAGGGTCAAGATTTTCATAACTTTACCGTAGTTAATATTTGACCCAACCATGGTTAAAATAAAGCAGTTTATATCACAGACACACACCTCTCTCTCTTCTAGACTCACTAAACAAAAATGATGATCGGCGAAAATAAAAACCGGCCACATCCAACGATCCATATCCCTCAATGGGATCAAATCAACGATCCAACGGCCACAATCTCTTCACCATTCTCTTCCGTCAACCTTAACAGCGTTAACGACTACCCACACTCTCCGTCACCGTATCTCGACTCCTTCGCTTCTCTCTTCCGTTACCTCCCGTCAAACGAGTTAACAAACGATTCAGACTCATCAAGTGGCGACGAGTCATCACCACTCACCGACTCATTCTCCTCCGACGAGTTTCGCATCTACGAGTTCAAAATCCGGCGATGCGCTCGAGGTCGATCTCATGATTGGACGGAGTGTCCGTTCGCACATCCCGGAGAAAAAGCTCGACGACGTGATCCGAGAAAGTTTCATTACTCCGGCACCGCTTGTCCTGAGTTTCGTAAAGGAAGTTGTAGAAGAGGTGATTCGTGTGAGTTCTCTCATGGAGTTTTCGAGTGTTGGCTCCATCCTTCTCGTTACCGTACTCAGCCGTGTAAAGACGGAACTAGCTGCCGGAGAAGAATCTGTTTCTTCGCTCATACGACGGAGCAGTTACGTGTATTACCTTGTTCGTTAGATCCAGATCTTGGATTCTTCTCAGGATTAGCTACTTCTCCGACTTCGATTCTTGTTTCTCCTTCGTTTTCACCACCGTCGGAATCTCCGCCGCTTTCTCCGAGTACCGGTGAACTTATTGCGTCGATGAGGAAAATGCAATTGAACGGAGGTGGTTGTTCGTGGAGTTCTCCGATGAGATCTGCAGTTAGGTTACCTTTTTCGTCGTCTCTGCGTCCGATTCAGGCGGCAACGTGGCCGAGGATAAGAGAGTTTGAGATCGAAGAAGCTCCGGCGATGGAATTTGTGGAATCTGGGAAAGAGCTGAGAGCGGAGATGTATGCAAGACTCAGTAGAGAGAACTCACTCGGTTGAGTCGACTTGGATCGAGTCTTTGATGACGTGGCGACTCGATCTGATTTTGTGAATATTTTAGAGATTTTTAAGGTGTTGTGGATAAATGACGTGGCGGGTCGATCTTAGTGACGGTACAATCGGACGATGAAGAAAAAAGCGTTAAGAGTAACAAAAAAAGGAAGAATTTGTAAAGAGATGATAATGAGAGAATTTGAGAGCTATTCTTCTGGCTTTTTTCTCTGCAGTTTTTTTTATTGTTTTCGTTATTTTCTTGTTTTTATTTTGGTTTTCGGCTTTATTTTGTTTGTTGTTTATTAATGTTATATCATTTTGTAATTAGTTCTCAAATGTATTTGGATAACATCTTAGTTTGAGACTTTAGAAAAGAACATTTCATTTGTTGTTTCCTTCTTATCGATTTCGTTGTTATAATAGTAAGAGGATATAAATATTTTTTGTTGGCCTGTTCTTTTTCCAAACGCTGCGATCATATCCAGCGACCAAAAAAAC
CDS Sequence
- >AT2G25900.1
ATGATGATCGGCGAAAATAAAAACCGGCCACATCCAACGATCCATATCCCTCAATGGGATCAAATCAACGATCCAACGGCCACAATCTCTTCACCATTCTCTTCCGTCAACCTTAACAGCGTTAACGACTACCCACACTCTCCGTCACCGTATCTCGACTCCTTCGCTTCTCTCTTCCGTTACCTCCCGTCAAACGAGTTAACAAACGATTCAGACTCATCAAGTGGCGACGAGTCATCACCACTCACCGACTCATTCTCCTCCGACGAGTTTCGCATCTACGAGTTCAAAATCCGGCGATGCGCTCGAGGTCGATCTCATGATTGGACGGAGTGTCCGTTCGCACATCCCGGAGAAAAAGCTCGACGACGTGATCCGAGAAAGTTTCATTACTCCGGCACCGCTTGTCCTGAGTTTCGTAAAGGAAGTTGTAGAAGAGGTGATTCGTGTGAGTTCTCTCATGGAGTTTTCGAGTGTTGGCTCCATCCTTCTCGTTACCGTACTCAGCCGTGTAAAGACGGAACTAGCTGCCGGAGAAGAATCTGTTTCTTCGCTCATACGACGGAGCAGTTACGTGTATTACCTTGTTCGTTAGATCCAGATCTTGGATTCTTCTCAGGATTAGCTACTTCTCCGACTTCGATTCTTGTTTCTCCTTCGTTTTCACCACCGTCGGAATCTCCGCCGCTTTCTCCGAGTACCGGTGAACTTATTGCGTCGATGAGGAAAATGCAATTGAACGGAGGTGGTTGTTCGTGGAGTTCTCCGATGAGATCTGCAGTTAGGTTACCTTTTTCGTCGTCTCTGCGTCCGATTCAGGCGGCAACGTGGCCGAGGATAAGAGAGTTTGAGATCGAAGAAGCTCCGGCGATGGAATTTGTGGAATCTGGGAAAGAGCTGAGAGCGGAGATGTATGCAAGACTCAGTAGAGAGAACTCACTCGGTTGA - >AT2G25900.2
ATGATGATCGGCGAAAATAAAAACCGGCCACATCCAACGATCCATATCCCTCAATGGGATCAAATCAACGATCCAACGGCCACAATCTCTTCACCATTCTCTTCCGTCAACCTTAACAGCGTTAACGACTACCCACACTCTCCGTCACCGTATCTCGACTCCTTCGCTTCTCTCTTCCGTTACCTCCCGTCAAACGAGTTAACAAACGATTCAGACTCATCAAGTGGCGACGAGTCATCACCACTCACCGACTCATTCTCCTCCGACGAGTTTCGCATCTACGAGTTCAAAATCCGGCGATGCGCTCGAGGTCGATCTCATGATTGGACGGAGTGTCCGTTCGCACATCCCGGAGAAAAAGCTCGACGACGTGATCCGAGAAAGTTTCATTACTCCGGCACCGCTTGTCCTGAGTTTCGTAAAGGAAGTTGTAGAAGAGGTGATTCGTGTGAGTTCTCTCATGGAGTTTTCGAGTGTTGGCTCCATCCTTCTCGTTACCGTACTCAGCCGTGTAAAGACGGAACTAGCTGCCGGAGAAGAATCTGTTTCTTCGCTCATACGACGGAGCAGTTACGTGTATTACCTTGTTCGTTAGATCCAGATCTTGGATTCTTCTCAGGATTAGCTACTTCTCCGACTTCGATTCTTGTTTCTCCTTCGTTTTCACCACCGTCGGAATCTCCGCCGCTTTCTCCGAGTACCGGTGAACTTATTGCGTCGATGAGGAAAATGCAATTGAACGGAGGTGGTTGTTCGTGGAGTTCTCCGATGAGATCTGCAGTTAGGTTACCTTTTTCGTCGTCTCTGCGTCCGATTCAGGCGGCAACGTGGCCGAGGATAAGAGAGTTTGAGATCGAAGAAGCTCCGGCGATGGAATTTGTGGAATCTGGGAAAGAGCTGAGAGCGGAGATGTATGCAAGACTCAGTAGAGAGAACTCACTCGGTTGA
Protein Sequence
- >AT2G25900.1
MMIGENKNRPHPTIHIPQWDQINDPTATISSPFSSVNLNSVNDYPHSPSPYLDSFASLFRYLPSNELTNDSDSSSGDESSPLTDSFSSDEFRIYEFKIRRCARGRSHDWTECPFAHPGEKARRRDPRKFHYSGTACPEFRKGSCRRGDSCEFSHGVFECWLHPSRYRTQPCKDGTSCRRRICFFAHTTEQLRVLPCSLDPDLGFFSGLATSPTSILVSPSFSPPSESPPLSPSTGELIASMRKMQLNGGGCSWSSPMRSAVRLPFSSSLRPIQAATWPRIREFEIEEAPAMEFVESGKELRAEMYARLSRENSLG - >AT2G25900.2
MMIGENKNRPHPTIHIPQWDQINDPTATISSPFSSVNLNSVNDYPHSPSPYLDSFASLFRYLPSNELTNDSDSSSGDESSPLTDSFSSDEFRIYEFKIRRCARGRSHDWTECPFAHPGEKARRRDPRKFHYSGTACPEFRKGSCRRGDSCEFSHGVFECWLHPSRYRTQPCKDGTSCRRRICFFAHTTEQLRVLPCSLDPDLGFFSGLATSPTSILVSPSFSPPSESPPLSPSTGELIASMRKMQLNGGGCSWSSPMRSAVRLPFSSSLRPIQAATWPRIREFEIEEAPAMEFVESGKELRAEMYARLSRENSLG