Information report for AT1G06830
Gene Details
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Functional Descriptions
- PO:0000013 — cauline leaf — hoja caulinar (Spanish, exact), 茎生葉、茎葉 (Japanese, exact)
- PO:0000230 — inflorescence meristem — meristema de la inflorescencia (Spanish, exact), 花序分裂組織 (Japanese, exact)
- PO:0009030 — carpel — carpelo (Spanish, exact), 心皮 (Japanese, exact), Poaceae carpel (narrow), Zea carpel (narrow), pistil (broad)
- PO:0009032 — petal — pétalo (Spanish, exact), 花弁 (Japanese, exact)
- PO:0009047 — stem — caña (Spanish, exact), culm (exact), eje primario (Spanish, exact), primary axis (exact), primary stem (exact), tallo (Spanish, exact), tronco (Spanish, exact), 茎 (Japanese, exact), bole (narrow), cane (narrow), caudex (narrow), caudices (narrow), core (narrow), primocane (narrow), scape (narrow), stalk (narrow), trunk (narrow)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
- PO:0000293 — guard cell — célula guardiana (Spanish, exact), occlusive cell (exact), 孔辺細胞 (Japanese, exact)
- GO:0006995 — acts upstream of or within — cellular response to nitrogen starvation
- GO:0005634 — is active in — nucleus
- GO:0005515 — enables — protein binding
- GO:0005737 — located in — cytoplasm
- GO:0005737 — is active in — cytoplasm
- GO:0005634 — located in — nucleus
Functional Keywords
- cauline leaf , inflorescence meristem , carpel , petal , stem , pollen , guard cell
Literature and News
- The phenotype of soluble starch synthase IV defective mutants of Arabidopsis thaliana suggests a novel function of elongation enzymes in the control of starch granule formation. DOI: 10.1111/j.1365-313X.2006.02968.x ; PMID: 17217470
- Overlapping functions of the starch synthases SSII and SSIII in amylopectin biosynthesis in Arabidopsis. DOI: 10.1186/1471-2229-8-96 ; PMID: 18811962
- Arabidopsis At5g39790 encodes a chloroplast-localized, carbohydrate-binding, coiled-coil domain-containing putative scaffold protein. DOI: 10.1186/1471-2229-8-120 ; PMID: 19038037
- Identification of the novel protein QQS as a component of the starch metabolic network in Arabidopsis leaves. DOI: 10.1111/j.1365-313X.2009.03793.x ; PMID: 19154206
- Integrated functions among multiple starch synthases determine both amylopectin chain length and branch linkage location in Arabidopsis leaf starch. DOI: 10.1093/jxb/err172 ; PMID: 21624979
- A sensitive method for confocal fluorescence microscopic visualization of starch granules in iodine stained samples. DOI: 10.4161/psb.21370 ; PMID: 22899048
- Intraspecific sequence variation and differential expression in starch synthase genes of Arabidopsis thaliana. DOI: 10.1186/1756-0500-6-84 ; PMID: 23497496
- Loss of starch granule initiation has a deleterious effect on the growth of arabidopsis plants due to an accumulation of ADP-glucose. DOI: 10.1104/pp.113.223420 ; PMID: 23872660
- HPLC-MS/MS analyses show that the near-Starchless aps1 and pgm leaves accumulate wild type levels of ADPglucose: further evidence for the occurrence of important ADPglucose biosynthetic pathway(s) alternative to the pPGI-pPGM-AGP pathway. DOI: 10.1371/journal.pone.0104997 ; PMID: 25133777
- Branching patterns in leaf starches from Arabidopsis mutants deficient in diverse starch synthases. DOI: 10.1016/j.carres.2014.09.011 ; PMID: 25464087
- Degradation of Glucan Primers in the Absence of Starch Synthase 4 Disrupts Starch Granule Initiation in Arabidopsis. DOI: 10.1074/jbc.M116.730648 ; PMID: 27458017
- The targeting of starch binding domains from starch synthase III to the cell wall alters cell wall composition and properties. DOI: 10.1007/s11103-016-0551-y ; PMID: 27770231
- Genetic Evidence That Chain Length and Branch Point Distributions Are Linked Determinants of Starch Granule Formation in Arabidopsis. DOI: 10.1104/pp.114.241455 ; PMID: 24965177
- Interplay Between the N-Terminal Domains of Arabidopsis Starch Synthase 3 Determines the Interaction of the Enzyme With the Starch Granule. DOI: 10.3389/fpls.2021.704161 ; PMID: 34630454
- Further insight into the involvement of PII1 in starch granule initiation in Arabidopsis leaf chloroplasts. DOI: 10.1111/nph.18923 ; PMID: 37010093
Gene Resources
- UniProt: A0A178W5R9
- EMBL: CACRSJ010000104, CACSHJ010000087, LUHQ01000001
- AlphaFoldDB: A0A178W5R9
- EnsemblPlants: AT1G06830.1
- Gramene: AT1G06830.1
- KEGG: ath:AT1G06830
- Orthologous matrix: MRMGING
- ExpressionAtlas: AT1G06830
- InterPro: IPR002109, IPR011905, IPR036249
- PANTHER: PTHR10168
- SUPFAM: SSF52833
- PROSITE: PS51354
- Gene3D: 3.40.30.10
- OrthoDB: A0A178W5R9
- SWISS-MODEL: A0A178W5R9
- Conserved Domain Database: cd03419
Homologs
- Citrullus lanatus Cla97C06G111230
- Glycine max Glyma.16G052800
- Juglans regia Jr10_00590
- Lactuca sativa gene-LSAT_3X32020
- Medicago truncatula Medtr7g026770
- Oryza sativa OsGrx_C7
- Populus trichocarpa POPTR_001G325800v3
- Prunus avium Pav_sc0001080.1_g710.1.mk
- Prunus persica PRUPE_3G309600
- Rosa chinensis RchiOBHm_Chr2g0176061
- Vitis vinifera VIT_01s0146g00220
Sequences
cDNA Sequence
- >AT1G06830.1
CTTCCCTCCTGTTATAAATAGCCTGAGACTCTAGCTACTCCTTTCAATCCATATACTTCTTCTTCTTCACCTTATGCAAGATAATGGACAAAGTTATGAGAATGTCGTCCGAAAAAGGGGTGGTTATATTTACCAAGAGCTCCTGTTGTTTGTCCTATGCGGTTCAAGTTCTCTTCCAAGATCTTGGTGTTAACCCTAAGATCCACGAGATTGATAAGGACCCTGAATGCCGAGAGATAGAGAAGGCTCTTATGAGGCTAGGGTGTTCAAAGCCGGTCCCAGCCGTCTTCATTGGTGGCAAGCTCGTTGGTTCGACCAACGAAGTAATGTCCATGCACCTAAGCAGCTCGCTCGTTCCCCTAGTGAAGCCATATTTATGTTAAACAACAACGAAGGAGTATTTATGATATTAATTAGCTATGTATATGTTATTCAATAAGGAACAAAATTGAGCCAAATCTTTGTAATGTGTTTTTTGGTATTATTATTGGTTGTATAACATTGGGAAAGTGTACGTATAATTATAAGACTGTTATATTGATTCGAAGGT
CDS Sequence
- >AT1G06830.1
ATGGACAAAGTTATGAGAATGTCGTCCGAAAAAGGGGTGGTTATATTTACCAAGAGCTCCTGTTGTTTGTCCTATGCGGTTCAAGTTCTCTTCCAAGATCTTGGTGTTAACCCTAAGATCCACGAGATTGATAAGGACCCTGAATGCCGAGAGATAGAGAAGGCTCTTATGAGGCTAGGGTGTTCAAAGCCGGTCCCAGCCGTCTTCATTGGTGGCAAGCTCGTTGGTTCGACCAACGAAGTAATGTCCATGCACCTAAGCAGCTCGCTCGTTCCCCTAGTGAAGCCATATTTATGTTAA
Protein Sequence
- >AT1G06830.1
MDKVMRMSSEKGVVIFTKSSCCLSYAVQVLFQDLGVNPKIHEIDKDPECREIEKALMRLGCSKPVPAVFIGGKLVGSTNEVMSMHLSSSLVPLVKPYLC