Information report for AT1G06390
Gene Details
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Functional Descriptions
- PO:0000003 — whole plant — planta entera (Spanish, exact), 植物体全体 (Japanese, exact), clonal colony (related), colony (related), bush (narrow), frutex (narrow), frutices (narrow), gametophyte (narrow), herb (narrow), liana (narrow), prothalli (narrow), prothallium (narrow), prothallus (narrow), seedling (narrow), shrub (narrow), sporophyte (narrow), suffrutex (narrow), suffrutices (narrow), tree (narrow), vine (narrow), woody clump (narrow), genet (broad), ramet (broad)
- PO:0000013 — cauline leaf — hoja caulinar (Spanish, exact), 茎生葉、茎葉 (Japanese, exact)
- PO:0000230 — inflorescence meristem — meristema de la inflorescencia (Spanish, exact), 花序分裂組織 (Japanese, exact)
- PO:0009010 — seed — semilla (Spanish, exact), 種子 (Japanese, exact), pyrene (narrow), diaspore (broad)
- PO:0009030 — carpel — carpelo (Spanish, exact), 心皮 (Japanese, exact), Poaceae carpel (narrow), Zea carpel (narrow), pistil (broad)
- PO:0009032 — petal — pétalo (Spanish, exact), 花弁 (Japanese, exact)
- PO:0009047 — stem — caña (Spanish, exact), culm (exact), eje primario (Spanish, exact), primary axis (exact), primary stem (exact), tallo (Spanish, exact), tronco (Spanish, exact), 茎 (Japanese, exact), bole (narrow), cane (narrow), caudex (narrow), caudices (narrow), core (narrow), primocane (narrow), scape (narrow), stalk (narrow), trunk (narrow)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
- PO:0000293 — guard cell — célula guardiana (Spanish, exact), occlusive cell (exact), 孔辺細胞 (Japanese, exact)
Functional Keywords
- whole plant , cauline leaf , inflorescence meristem , seed , carpel , petal , stem , pollen , guard cell
Literature and News
- DEG9, a serine protease, modulates cytokinin and light signaling by regulating the level of ARABIDOPSIS RESPONSE REGULATOR 4. DOI: 10.1073/pnas.1601724113 ; PMID: 27274065
- The crystal structure of Deg9 reveals a novel octameric-type HtrA protease. DOI: 10.1038/s41477-017-0060-2 ; PMID: 29180814
- Characterization of a family of Arabidopsis zinc finger protein cDNAs. DOI: 10.1007/BF00020246 ; PMID: 7599312
- and jasmonic acid/ethylene-dependent responses via EDS1 and PAD4. DOI: 10.1111/j.1365-313X.2006.02806.x ; PMID: 16813576
- Zinc finger protein5 is required for the control of trichome initiation by acting upstream of zinc finger protein8 in Arabidopsis. DOI: 10.1104/pp.111.180281 ; PMID: 21803862
- ZFP5 encodes a functionally equivalent GIS protein to control trichome initiation. DOI: 10.4161/psb.7.1.18404 ; PMID: 22301962
- A zinc finger protein gene ZFP5 integrates phytohormone signaling to control root hair development in Arabidopsis. DOI: 10.1111/j.1365-313X.2012.05094.x ; PMID: 22762888
- Zinc Finger Protein 6 (ZFP6) regulates trichome initiation by integrating gibberellin and cytokinin signaling in Arabidopsis thaliana. DOI: 10.1111/nph.12211 ; PMID: 23506479
- RPN1a, a subunit of the 26S proteasome, controls trichome development in Arabidopsis. DOI: 10.1016/j.plaphy.2015.01.012 ; PMID: 25676129
- GLABROUS INFLORESCENCE STEMS3 (GIS3) regulates trichome initiation and development in Arabidopsis. DOI: 10.1111/nph.13218 ; PMID: 25640859
- The novel transcription factor TRP interacts with ZFP5, a trichome initiation-related transcription factor, and negatively regulates trichome initiation through gibberellic acid signaling. DOI: 10.1007/s11103-018-0697-x ; PMID: 29335898
- Arabidopsis ZINC FINGER PROTEIN1 Acts Downstream of GL2 to Repress Root Hair Initiation and Elongation by Directly Suppressing bHLH Genes. DOI: 10.1105/tpc.19.00226 ; PMID: 31732703
- Zinc finger protein 5 (ZFP5) associates with ethylene signaling to regulate the phosphate and potassium deficiency-induced root hair development in Arabidopsis. DOI: 10.1007/s11103-019-00937-4 ; PMID: 31782079
- SDG26 Is Involved in Trichome Control in Arabidopsis thaliana: Affecting Phytohormones and Adjusting Accumulation of H3K27me3 on Genes Related to Trichome Growth and Development. DOI: 10.3390/plants12081651 ; PMID: 37111875
- Iron-sulfur cluster biogenesis in chloroplasts. Involvement of the scaffold protein CpIscA. DOI: 10.1104/pp.104.058602 ; PMID: 15888686
- PIC1, an ancient permease in Arabidopsis chloroplasts, mediates iron transport. DOI: 10.1105/tpc.106.047407 ; PMID: 17337631
- Genome analysis of Chlamydomonas reinhardtii reveals the existence of multiple, compartmentalized iron-sulfur protein assembly machineries of different evolutionary origins. DOI: 10.1534/genetics.107.086033 ; PMID: 18493040
- Selective Interaction Between Chloroplast β-ATPase and TGB1L88 Retards Severe Symptoms Caused by Alternanthera mosaic virus Infection. DOI: 10.5423/PPJ.OA.09.2013.0097 ; PMID: 25288986
- Conserved functions of Arabidopsis mitochondrial late-acting maturation factors in the trafficking of iron‑sulfur clusters. DOI: 10.1016/j.bbamcr.2018.06.003 ; PMID: 29902489
- The Arabidopsis Mitochondrial Glutaredoxin GRXS15 Provides [2Fe-2S] Clusters for ISCA-Mediated [4Fe-4S] Cluster Maturation. DOI: 10.3390/ijms21239237 ; PMID: 33287436
- Laser capture microdissection for the analysis of gene expression during embryogenesis of Arabidopsis. DOI: 10.1111/j.1365-313X.2005.02355.x ; PMID: 15773857
- AtPolλ, a homolog of mammalian DNA polymerase λ in Arabidopsis thaliana, is involved in the repair of UV-B induced DNA damage through the dark repair pathway. DOI: 10.1093/pcp/pcr002 ; PMID: 21227935
- A nick-sensing DNA 3'-repair enzyme from Arabidopsis. DOI: 10.1074/jbc.M201411200 ; PMID: 11948185
- Breadth by depth: expanding our understanding of the repair of transposon-induced DNA double strand breaks via deep-sequencing. DOI: 10.1016/j.dnarep.2011.07.011 ; PMID: 21889425
- and DNA cross-linking agent-induced double strand breaks in Arabidopsis. DOI: 10.1104/pp.113.219022 ; PMID: 23660835
- Understanding the Physical and Molecular Basis of Stability of Arabidopsis DNA Pol λ under UV-B and High NaCl Stress. DOI: 10.1371/journal.pone.0133843 ; PMID: 26230318
- The plastid redox insensitive 2 mutant of Arabidopsis is impaired in PEP activity and high light-dependent plastid redox signalling to the nucleus. DOI: 10.1111/j.1365-313X.2011.04865.x ; PMID: 22211401
- Conservation and functional element discovery in 20 angiosperm plant genomes. DOI: 10.1093/molbev/mst082 ; PMID: 23640124
- Redox regulation of PEP activity during seedling establishment in Arabidopsis thaliana. DOI: 10.1038/s41467-017-02468-2 ; PMID: 29298981
- Methylation patterns of histone H3 Lys 4, Lys 9 and Lys 27 in transcriptionally active and inactive Arabidopsis genes and in atx1 mutants. DOI: 10.1093/nar/gki830 ; PMID: 16157865
Gene Resources
- UniProt: A0A178WCN5
- EMBL: CACRSJ010000104, LUHQ01000001
- AlphaFoldDB: A0A178WCN5
- EnsemblPlants: AT1G06390.1, AT1G06390.2
- Gramene: AT1G06390.1, AT1G06390.2
- KEGG: ath:AT1G06390
- Orthologous matrix: AYIHTVH
- ExpressionAtlas: AT1G06390
- InterPro: IPR000719, IPR008271, IPR011009
- PANTHER: PTHR24057, PTHR24057:SF5
- SUPFAM: SSF56112
- PROSITE: PS00107, PS00108, PS50011
- Gene3D: 1.10.510.10, 3.30.200.20
- SWISS-MODEL: A0A178WCN5
- Conserved Domain Database: cd14137
Sequences
cDNA Sequence
- >AT1G06390.1
CCGTGGGTCCTCCATTGTCTTTGAACCATTTCTGAAATTTAGAAGCAAAGAGAGAGGAAAAATTAGACTTTACTCATTGTTCAGTGGTTGAGAGAGAAAAGAGTAAAAAAGCACATGGCCTCATTACCATTGGGGCCTCAGCCTCATGCTCTTGCTCCGCCGCTGCAGCTTCACGACGGCGACGCTTTGAAACGCCGTCCTGAATTGGATTCTGATAAGGAAATGTCTGCAGCTGTTATTGAGGGAAATGACGCTGTTACTGGTCATATCATTTCCACTACTATTGGAGGCAAAAACGGCGAACCAAAGCAGACCATTAGTTACATGGCTGAGCGGGTTGTTGGAACAGGTTCATTCGGGATTGTTTTTCAGGCGAAATGCTTGGAAACTGGAGAATCAGTAGCCATTAAAAAGGTCTTGCAAGATCGACGCTATAAAAACCGTGAGTTGCAACTAATGCGACCAATGGATCACCCAAATGTCATCTCCTTGAAGCACTGTTTCTTCTCTACAACGAGTAGAGATGAGCTCTTCCTCAACCTTGTTATGGAGTATGTACCTGAGACTTTATACCGGGTTTTGAGGCACTATACTAGTTCTAATCAGAGGATGCCAATTTTCTATGTCAAGCTTTACACATATCAAATCTTTAGAGGTTTGGCTTACATCCATACTGTTCCCGGTGTTTGCCACAGAGATGTGAAACCACAAAATCTCTTGGTTGATCCCTTGACCCATCAGGTTAAGCTGTGTGATTTTGGAAGTGCAAAAGTATTGGTCAAAGGTGAACCAAACATATCATATATCTGCTCCCGTTATTATCGTGCTCCAGAACTGATCTTTGGCGCCACAGAGTATACAGCATCCATAGATATATGGTCTGCTGGTTGTGTACTGGCAGAGCTTCTTCTGGGCCAGCCGTTATTTCCAGGAGAAAATTCAGTTGATCAGCTTGTGGAGATCATAAAGGTTCTTGGTACTCCAACTCGTGAAGAAATTCGATGTATGAACCCGAACTACACAGATTTTAGGTTCCCACAAATCAAAGCTCACCCTTGGCACAAGGTTTTTCATAAACGGATGCCTCCAGAAGCAATAGACCTTGCATCTCGGCTTCTTCAATATTCACCAAGTCTACGCTGCACTGCGCTCGAAGCATGTGCTCATCCGTTTTTCAATGAACTCCGAGAGCCAAACGCCCGTCTTCCAAATGGTCGTCCATTACCGCCATTGTTCAATTTCAAACAAGAGTTAGGTGGAGCTTCAATGGAGCTAATCAACAGGCTAATACCTGAGCATGTGAGACGACAAATGAGCACAGGATTACAAAACAGTTAAAAACTGTGCATGTCTGAAGAGAAAGAGGAGAAAAGCAGGTTTACTACTTTTATTTGATAGTTGACAGGTTCAACAGTATATTAACCACGACTATTATCAGCTTCTATACCCGTAGTAAAGTCATATTCAGCTTTTTGAGAAATCAGATGCTGATAATTGCGTTTTTTTTTTTTTTATTCCGTAGCCTGGAGAGTGGAGAGAGACACTGTTCCTCGTGTATTTTTGTATATGTTTTTGTCTGTAAAACAATTCTGACAGATACGTAGAGACAAAAGAAAAACGAGGTGATAATATTAAACCATGTCATGTCCAAAAGATTAGCTACAGATGTTTTTTTGTTTTCTTCTCTCAACACAAAAGACTAGAGGGATAAATAATCATCCTCTTAAATTAAAAGTCGCTAGATCTATTTTCGAAATGTTACGTAGGTGAT - >AT1G06390.2
CCGTGGGTCCTCCATTGTCTTTGAACCATTTCTGAAATTTAGAAGCAAAGAGAGAGGAAAAATTAGACTTTACTCATTGTTCAGTGGTTGAGAGAGAAAAGAGTAAAAAAGCACATGGCCTCATTACCATTGGGGCCTCAGCCTCATGCTCTTGCTCCGCCGCTGCAGCTTCACGACGGCGACGCTTTGAAACGCCGTCCTGAATTGGATTCTGATAAGGAAATGTCTGCAGCTGTTATTGAGGGAAATGACGCTGTTACTGGTCATATCATTTCCACTACTATTGGAGGCAAAAACGGCGAACCAAAGCAGACCATTAGTTACATGGCTGAGCGGGTTGTTGGAACAGGTTCATTCGGGATTGTTTTTCAGGCGAAATGCTTGGAAACTGGAGAATCAGTAGCCATTAAAAAGGTCTTGCAAGATCGACGCTATAAAAACCGTGAGTTGCAACTAATGCGACCAATGGATCACCCAAATGTCATCTCCTTGAAGCACTGTTTCTTCTCTACAACGAGTAGAGATGAGCTCTTCCTCAACCTTGTTATGGAGTATGTACCTGAGACTTTATACCGGGTTTTGAGGCACTATACTAGTTCTAATCAGAGGATGCCAATTTTCTATGTCAAGCTTTACACATATCAAATCTTTAGAGGTTTGGCTTACATCCATACTGTTCCCGGTGTTTGCCACAGAGATGTGAAACCACAAAATCTCTTGGTTGATCCCTTGACCCATCAGGTTAAGCTGTGTGATTTTGGAAGTGCAAAAGTATTGGTCAAAGGTGAACCAAACATATCATATATCTGCTCCCGTTATTATCGTGCTCCAGAACTGATCTTTGGCGCCACAGAGTATACAGCATCCATAGATATATGGTCTGCTGGTTGTGTACTGGCAGAGCTTCTTCTGGGCCAGCCGTTATTTCCAGGAGAAAATTCAGTTGATCAGCTTGTGGAGATCATAAAGGTTCTTGGTACTCCAACTCGTGAAGAAATTCGATGTATGAACCCGAACTACACAGATTTTAGGTTCCCACAAATCAAAGCTCACCCTTGGCACAAGGTTTTTCATAAACGGATGCCTCCAGAAGCAATAGACCTTGCATCTCGGCTTCTTCAATATTCACCAAGTCTACGCTGCACTGCGCTCGAAGCATGTGCTCATCCGTTTTTCAATGAACTCCGAGAGCCAAACGCCCGTCTTCCAAATGGTCGTCCATTACCGCCATTGTTCAATTTCAAACAAGAGTTAGGTGGAGCTTCAATGGAGCTAATCAACAGGCTAATACCTGAGCATGTGAGACGACAAATGAGCACAGGATTACAAAACAGTTAAAAACTGTGCATGTCTGAAGAGAAAGAGGAGAAAAGCAGGTTTACTACTTTTATTTGATAGTTGACAGGTTCAACAGTATATTAACCACGACTATTATCAGCTTCTATACCCGTAGTAAAGTCATATTCAGCTTTTTGAGAAATCAGATGCTGATAATTGCGTTTTTTTTTTTTTTATTCCGTAGCCTGGAGAGTGGAGAGAGACACTGTTCCTCGTGTATTTTTGTATATGTTTTTGTCTGTAAAACAATTCTGACAGATACGTAGAGACAAAAGAAAAACGAGGTGATAATATTAAACCATGTCATGTCCAAAAGATTAGCTACAGATGTTTTTTTGTTTTCTTCTCTCAACACAAAAGACTAGAGGGATAAATAATCATCCTCTTAAATTAAAAGTCGCTAGATCTATTTTCGAAATGTTACGTAGGTGAT
CDS Sequence
- >AT1G06390.1
ATGGCCTCATTACCATTGGGGCCTCAGCCTCATGCTCTTGCTCCGCCGCTGCAGCTTCACGACGGCGACGCTTTGAAACGCCGTCCTGAATTGGATTCTGATAAGGAAATGTCTGCAGCTGTTATTGAGGGAAATGACGCTGTTACTGGTCATATCATTTCCACTACTATTGGAGGCAAAAACGGCGAACCAAAGCAGACCATTAGTTACATGGCTGAGCGGGTTGTTGGAACAGGTTCATTCGGGATTGTTTTTCAGGCGAAATGCTTGGAAACTGGAGAATCAGTAGCCATTAAAAAGGTCTTGCAAGATCGACGCTATAAAAACCGTGAGTTGCAACTAATGCGACCAATGGATCACCCAAATGTCATCTCCTTGAAGCACTGTTTCTTCTCTACAACGAGTAGAGATGAGCTCTTCCTCAACCTTGTTATGGAGTATGTACCTGAGACTTTATACCGGGTTTTGAGGCACTATACTAGTTCTAATCAGAGGATGCCAATTTTCTATGTCAAGCTTTACACATATCAAATCTTTAGAGGTTTGGCTTACATCCATACTGTTCCCGGTGTTTGCCACAGAGATGTGAAACCACAAAATCTCTTGGTTGATCCCTTGACCCATCAGGTTAAGCTGTGTGATTTTGGAAGTGCAAAAGTATTGGTCAAAGGTGAACCAAACATATCATATATCTGCTCCCGTTATTATCGTGCTCCAGAACTGATCTTTGGCGCCACAGAGTATACAGCATCCATAGATATATGGTCTGCTGGTTGTGTACTGGCAGAGCTTCTTCTGGGCCAGCCGTTATTTCCAGGAGAAAATTCAGTTGATCAGCTTGTGGAGATCATAAAGGTTCTTGGTACTCCAACTCGTGAAGAAATTCGATGTATGAACCCGAACTACACAGATTTTAGGTTCCCACAAATCAAAGCTCACCCTTGGCACAAGGTTTTTCATAAACGGATGCCTCCAGAAGCAATAGACCTTGCATCTCGGCTTCTTCAATATTCACCAAGTCTACGCTGCACTGCGCTCGAAGCATGTGCTCATCCGTTTTTCAATGAACTCCGAGAGCCAAACGCCCGTCTTCCAAATGGTCGTCCATTACCGCCATTGTTCAATTTCAAACAAGAGTTAGGTGGAGCTTCAATGGAGCTAATCAACAGGCTAATACCTGAGCATGTGAGACGACAAATGAGCACAGGATTACAAAACAGTTAA - >AT1G06390.2
ATGGCCTCATTACCATTGGGGCCTCAGCCTCATGCTCTTGCTCCGCCGCTGCAGCTTCACGACGGCGACGCTTTGAAACGCCGTCCTGAATTGGATTCTGATAAGGAAATGTCTGCAGCTGTTATTGAGGGAAATGACGCTGTTACTGGTCATATCATTTCCACTACTATTGGAGGCAAAAACGGCGAACCAAAGCAGACCATTAGTTACATGGCTGAGCGGGTTGTTGGAACAGGTTCATTCGGGATTGTTTTTCAGGCGAAATGCTTGGAAACTGGAGAATCAGTAGCCATTAAAAAGGTCTTGCAAGATCGACGCTATAAAAACCGTGAGTTGCAACTAATGCGACCAATGGATCACCCAAATGTCATCTCCTTGAAGCACTGTTTCTTCTCTACAACGAGTAGAGATGAGCTCTTCCTCAACCTTGTTATGGAGTATGTACCTGAGACTTTATACCGGGTTTTGAGGCACTATACTAGTTCTAATCAGAGGATGCCAATTTTCTATGTCAAGCTTTACACATATCAAATCTTTAGAGGTTTGGCTTACATCCATACTGTTCCCGGTGTTTGCCACAGAGATGTGAAACCACAAAATCTCTTGGTTGATCCCTTGACCCATCAGGTTAAGCTGTGTGATTTTGGAAGTGCAAAAGTATTGGTCAAAGGTGAACCAAACATATCATATATCTGCTCCCGTTATTATCGTGCTCCAGAACTGATCTTTGGCGCCACAGAGTATACAGCATCCATAGATATATGGTCTGCTGGTTGTGTACTGGCAGAGCTTCTTCTGGGCCAGCCGTTATTTCCAGGAGAAAATTCAGTTGATCAGCTTGTGGAGATCATAAAGGTTCTTGGTACTCCAACTCGTGAAGAAATTCGATGTATGAACCCGAACTACACAGATTTTAGGTTCCCACAAATCAAAGCTCACCCTTGGCACAAGGTTTTTCATAAACGGATGCCTCCAGAAGCAATAGACCTTGCATCTCGGCTTCTTCAATATTCACCAAGTCTACGCTGCACTGCGCTCGAAGCATGTGCTCATCCGTTTTTCAATGAACTCCGAGAGCCAAACGCCCGTCTTCCAAATGGTCGTCCATTACCGCCATTGTTCAATTTCAAACAAGAGTTAGGTGGAGCTTCAATGGAGCTAATCAACAGGCTAATACCTGAGCATGTGAGACGACAAATGAGCACAGGATTACAAAACAGTTAA
Protein Sequence
- >AT1G06390.1
MASLPLGPQPHALAPPLQLHDGDALKRRPELDSDKEMSAAVIEGNDAVTGHIISTTIGGKNGEPKQTISYMAERVVGTGSFGIVFQAKCLETGESVAIKKVLQDRRYKNRELQLMRPMDHPNVISLKHCFFSTTSRDELFLNLVMEYVPETLYRVLRHYTSSNQRMPIFYVKLYTYQIFRGLAYIHTVPGVCHRDVKPQNLLVDPLTHQVKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTASIDIWSAGCVLAELLLGQPLFPGENSVDQLVEIIKVLGTPTREEIRCMNPNYTDFRFPQIKAHPWHKVFHKRMPPEAIDLASRLLQYSPSLRCTALEACAHPFFNELREPNARLPNGRPLPPLFNFKQELGGASMELINRLIPEHVRRQMSTGLQNS - >AT1G06390.2
MASLPLGPQPHALAPPLQLHDGDALKRRPELDSDKEMSAAVIEGNDAVTGHIISTTIGGKNGEPKQTISYMAERVVGTGSFGIVFQAKCLETGESVAIKKVLQDRRYKNRELQLMRPMDHPNVISLKHCFFSTTSRDELFLNLVMEYVPETLYRVLRHYTSSNQRMPIFYVKLYTYQIFRGLAYIHTVPGVCHRDVKPQNLLVDPLTHQVKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTASIDIWSAGCVLAELLLGQPLFPGENSVDQLVEIIKVLGTPTREEIRCMNPNYTDFRFPQIKAHPWHKVFHKRMPPEAIDLASRLLQYSPSLRCTALEACAHPFFNELREPNARLPNGRPLPPLFNFKQELGGASMELINRLIPEHVRRQMSTGLQNS