Information report for AT1G06070
Gene Details
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Functional Descriptions
- PO:0000013 — cauline leaf — hoja caulinar (Spanish, exact), 茎生葉、茎葉 (Japanese, exact)
- PO:0000230 — inflorescence meristem — meristema de la inflorescencia (Spanish, exact), 花序分裂組織 (Japanese, exact)
- PO:0009010 — seed — semilla (Spanish, exact), 種子 (Japanese, exact), pyrene (narrow), diaspore (broad)
- PO:0009030 — carpel — carpelo (Spanish, exact), 心皮 (Japanese, exact), Poaceae carpel (narrow), Zea carpel (narrow), pistil (broad)
- PO:0009032 — petal — pétalo (Spanish, exact), 花弁 (Japanese, exact)
- PO:0009047 — stem — caña (Spanish, exact), culm (exact), eje primario (Spanish, exact), primary axis (exact), primary stem (exact), tallo (Spanish, exact), tronco (Spanish, exact), 茎 (Japanese, exact), bole (narrow), cane (narrow), caudex (narrow), caudices (narrow), core (narrow), primocane (narrow), scape (narrow), stalk (narrow), trunk (narrow)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
- PO:0000293 — guard cell — célula guardiana (Spanish, exact), occlusive cell (exact), 孔辺細胞 (Japanese, exact)
Functional Keywords
- cauline leaf , inflorescence meristem , seed , carpel , petal , stem , pollen , guard cell
Literature and News
- Transcriptome analyses revealed diverse expression changes in ago1 and hyl1 Arabidopsis mutants. DOI: 10.1093/pcp/pcp109 ; PMID: 19633021
- The Arabidopsis thaliana double-stranded RNA binding protein DRB1 directs guide strand selection from microRNA duplexes. DOI: 10.1261/rna.1646909 ; PMID: 19861421
- Characterization of EMU, the Arabidopsis homolog of the yeast THO complex member HPR1. DOI: 10.1261/rna.2265710 ; PMID: 20668032
- HYL1 controls the miR156-mediated juvenile phase of vegetative growth. DOI: 10.1093/jxb/err465 ; PMID: 22268150
- DRB2 is required for microRNA biogenesis in Arabidopsis thaliana. DOI: 10.1371/journal.pone.0035933 ; PMID: 22545148
- The microRNA pathway genes AGO1, HEN1 and HYL1 participate in leaf proximal-distal, venation and stomatal patterning in Arabidopsis. DOI: 10.1093/pcp/pcs077 ; PMID: 22623415
- Arabidopsis proline-rich protein important for development and abiotic stress tolerance is involved in microRNA biogenesis. DOI: 10.1073/pnas.1216199109 ; PMID: 23071326
- Fast-forward genetics identifies plant CPL phosphatases as regulators of miRNA processing factor HYL1. DOI: 10.1016/j.cell.2012.09.039 ; PMID: 23141542
- The evolution of microRNA pathway protein components in Cnidaria. DOI: 10.1093/molbev/mst159 ; PMID: 24030553
- MicroRNA biogenesis factor DRB1 is a phosphorylation target of mitogen activated protein kinase MPK3 in both rice and Arabidopsis. DOI: 10.1111/febs.13159 ; PMID: 25417716
- COP1 E3 ligase protects HYL1 to retain microRNA biogenesis. DOI: 10.1038/ncomms6867 ; PMID: 25532508
- Functional mapping of the plant small RNA methyltransferase: HEN1 physically interacts with HYL1 and DICER-LIKE 1 proteins. DOI: 10.1093/nar/gkv102 ; PMID: 25680966
- The RNA-binding protein HOS5 and serine/arginine-rich proteins RS40 and RS41 participate in miRNA biogenesis in Arabidopsis. DOI: 10.1093/nar/gkv751 ; PMID: 26227967
- MicroRNA Regulatory Mechanisms Play Different Roles in Arabidopsis. DOI: 10.1021/acs.jproteome.5b00616 ; PMID: 26387911
- Regulation of MicroRNA-Mediated Developmental Changes by the SWR1 Chromatin Remodeling Complex. DOI: 10.1104/pp.16.00332 ; PMID: 27208270
- KETCH1 imports HYL1 to nucleus for miRNA biogenesis in Arabidopsis. DOI: 10.1073/pnas.1619755114 ; PMID: 28348234
Gene Resources
- UniProt: Q9LNE0
- EMBL: AC024174, AJ419854, AK229666
- AlphaFoldDB: Q9LNE0
- EnsemblPlants: AT1G06070.1
- Gramene: AT1G06070.1
- KEGG: ath:AT1G06070
- Orthologous matrix: YASYGTN
- ExpressionAtlas: AT1G06070
Homologs
- Brassica napus GSBRNA2T00145153001, GSBRNA2T00089737001, GSBRNA2T00031984001
- Brassica oleracea XP_013599470.1, XP_013637666.1, XP_013637665.1
- Brassica rapa XP_009111007.1, XP_009119093.1
- Ziziphus jujuba XP_015867592.1, XP_015867591.1, XP_015867590.1
Sequences
cDNA Sequence
- >AT1G06070.1
CAGTAACATCGTTCATTGCAACACGCTAACGCAGCTGATTACACCCTAATTCCGACAAAAGTACCACTTACCCGAACCAAATTACGTTTAAACGACATCGTTTACGCCGTAAATCTTCTGATGCACACTAGTTCGAAGGATCCTTTAATGGGAGAGAGAATGTTCTACTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCCTCTCTCGTCGGATCTCTCTGATTTAGTGATTTTTCAAATTTCAAGTTTTCTTCACCTTTAATTTTGTGTCTCGTTGATCTCTCTTTGGACATTCTGCTTTGGATTCTGGAGGCTTCTCATTAGATCTCTATTAGTGGGTTTAGGTCAAGTTCTTGAAATGGATAAGGAGAAATCTCCTGCACCACCACCTAGTGGAGGTCTTCCTCCACCATCGGGTCGTTACTCTGCGTTTTCACCTAATGGAAGTAGCTTTGCAATGAAAGCTGAATCATCTTTTCCTCCTTTGACTCCAAGTGGAAGCAATAGCTCAGATGCTAACCGATTCAGCCATGATATTAGCCGAATGCCGGATAATCCACCTAAGAACCTAGGCCATCGCCGAGCTCATTCAGAGATTCTTACTCTTCCTGATGACTTAAGCTTTGATAGTGATCTTGGTGTGGTTGGTGCTGCTGATGGACCTTCTTTCTCTGATGATACTGACGAGGACTTACTCTATATGTATCTTGATATGGAAAAATTCAATTCTTCTGCTACATCGACTTCTCAAATGGGTGAGCCATCAGAACCGACTTGGAGGAATGAATTAGCCTCGACTTCTAACCTTCAGAGTACACCCGGTAGCTCTAGTGAAAGACCGAGAATTAGACACCAACACAGCCAATCGATGGATGGTTCAACAACTATCAAGCCTGAGATGCTTATGTCAGGGAATGAAGATGTGTCTGGAGTTGACTCTAAGAAAGCCATCTCTGCTGCTAAACTTTCTGAGCTTGCTCTCATTGATCCAAAACGCGCCAAGAGGATATGGGCAAACAGGCAGTCTGCTGCGAGGTCAAAAGAAAGGAAGATGAGATACATTGCAGAGCTCGAGAGAAAAGTACAGACTTTACAAACAGAGGCCACATCTCTCTCAGCCCAGTTGACTCTCTTACAGAGAGATACAAATGGCCTGGGTGTTGAAAACAATGAGCTTAAACTGCGAGTACAAACTATGGAGCAACAGGTCCACCTACAGGATGCTTTAAATGATGCACTAAAGGAGGAAGTCCAGCATCTTAAGGTATTGACGGGGCAAGGTCCATCAAATGGTACATCAATGAACTACGGTTCTTTTGGATCAAACCAGCAATTCTATCCCAATAATCAGTCGATGCACACTATCTTAGCCGCACAACAGTTACAGCAGCTCCAGATCCAGTCACAGAAACAGCAACAACAACAACAGCAACACCAGCAACAACAACAGCAGCAGCAGCAGCAATTTCACTTTCAACAGCAGCAACTGTACCAGCTTCAGCAGCAGCAACGGCTTCAACAACAGGAACAACAAAGCGGGGCTTCAGAGCTAAGAAGACCCATGCCTTCTCCTGGTCAGAAAGAGAGTGTGACATCGCCTGATCGTGAAACTCCCTTGACAAAAGACTGAGTCTAGACTGTGCTAATGTCCAATTTAGTAAGTTACTCTTGGAAAATCTTCTTTTTCATCGCAGGCTCATGGATTTGGGATTTACTGCATTATAGAGTTAAAAACAAGACAGCTTAGAAGTTGCGGATTTAGAAGTTGTTAGTGAAGCTTTTGTTCTCGTCTGTTGGTAGTTTACAATCTTCTCTTTGTATGATCCTAAGCTCTTAAAAAGTTCTTGGATTTGGTCATTTGGTTAGAAATGGGTCCTTAGTCCAAGTCTGTAGTCGTTTAACCATATTCATATTCTTTGCCTTTTGTTCATTTTGGTTACTTGAAAAGTCTCATTTGGTCTTGAATTGTGATGTCTAAAAATAAAACCTTGAATTTGCAAGT
CDS Sequence
- >AT1G06070.1
ATGGATAAGGAGAAATCTCCTGCACCACCACCTAGTGGAGGTCTTCCTCCACCATCGGGTCGTTACTCTGCGTTTTCACCTAATGGAAGTAGCTTTGCAATGAAAGCTGAATCATCTTTTCCTCCTTTGACTCCAAGTGGAAGCAATAGCTCAGATGCTAACCGATTCAGCCATGATATTAGCCGAATGCCGGATAATCCACCTAAGAACCTAGGCCATCGCCGAGCTCATTCAGAGATTCTTACTCTTCCTGATGACTTAAGCTTTGATAGTGATCTTGGTGTGGTTGGTGCTGCTGATGGACCTTCTTTCTCTGATGATACTGACGAGGACTTACTCTATATGTATCTTGATATGGAAAAATTCAATTCTTCTGCTACATCGACTTCTCAAATGGGTGAGCCATCAGAACCGACTTGGAGGAATGAATTAGCCTCGACTTCTAACCTTCAGAGTACACCCGGTAGCTCTAGTGAAAGACCGAGAATTAGACACCAACACAGCCAATCGATGGATGGTTCAACAACTATCAAGCCTGAGATGCTTATGTCAGGGAATGAAGATGTGTCTGGAGTTGACTCTAAGAAAGCCATCTCTGCTGCTAAACTTTCTGAGCTTGCTCTCATTGATCCAAAACGCGCCAAGAGGATATGGGCAAACAGGCAGTCTGCTGCGAGGTCAAAAGAAAGGAAGATGAGATACATTGCAGAGCTCGAGAGAAAAGTACAGACTTTACAAACAGAGGCCACATCTCTCTCAGCCCAGTTGACTCTCTTACAGAGAGATACAAATGGCCTGGGTGTTGAAAACAATGAGCTTAAACTGCGAGTACAAACTATGGAGCAACAGGTCCACCTACAGGATGCTTTAAATGATGCACTAAAGGAGGAAGTCCAGCATCTTAAGGTATTGACGGGGCAAGGTCCATCAAATGGTACATCAATGAACTACGGTTCTTTTGGATCAAACCAGCAATTCTATCCCAATAATCAGTCGATGCACACTATCTTAGCCGCACAACAGTTACAGCAGCTCCAGATCCAGTCACAGAAACAGCAACAACAACAACAGCAACACCAGCAACAACAACAGCAGCAGCAGCAGCAATTTCACTTTCAACAGCAGCAACTGTACCAGCTTCAGCAGCAGCAACGGCTTCAACAACAGGAACAACAAAGCGGGGCTTCAGAGCTAAGAAGACCCATGCCTTCTCCTGGTCAGAAAGAGAGTGTGACATCGCCTGATCGTGAAACTCCCTTGACAAAAGACTGA
Protein Sequence
- >AT1G06070.1
MDKEKSPAPPPSGGLPPPSGRYSAFSPNGSSFAMKAESSFPPLTPSGSNSSDANRFSHDISRMPDNPPKNLGHRRAHSEILTLPDDLSFDSDLGVVGAADGPSFSDDTDEDLLYMYLDMEKFNSSATSTSQMGEPSEPTWRNELASTSNLQSTPGSSSERPRIRHQHSQSMDGSTTIKPEMLMSGNEDVSGVDSKKAISAAKLSELALIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLGVENNELKLRVQTMEQQVHLQDALNDALKEEVQHLKVLTGQGPSNGTSMNYGSFGSNQQFYPNNQSMHTILAAQQLQQLQIQSQKQQQQQQQHQQQQQQQQQQFHFQQQQLYQLQQQQRLQQQEQQSGASELRRPMPSPGQKESVTSPDRETPLTKD