Information report for AT1G05850
Gene Details
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Functional Descriptions
- PO:0000013 — cauline leaf — hoja caulinar (Spanish, exact), 茎生葉、茎葉 (Japanese, exact)
- PO:0000230 — inflorescence meristem — meristema de la inflorescencia (Spanish, exact), 花序分裂組織 (Japanese, exact)
- PO:0009010 — seed — semilla (Spanish, exact), 種子 (Japanese, exact), pyrene (narrow), diaspore (broad)
- PO:0009030 — carpel — carpelo (Spanish, exact), 心皮 (Japanese, exact), Poaceae carpel (narrow), Zea carpel (narrow), pistil (broad)
- PO:0009032 — petal — pétalo (Spanish, exact), 花弁 (Japanese, exact)
- PO:0009047 — stem — caña (Spanish, exact), culm (exact), eje primario (Spanish, exact), primary axis (exact), primary stem (exact), tallo (Spanish, exact), tronco (Spanish, exact), 茎 (Japanese, exact), bole (narrow), cane (narrow), caudex (narrow), caudices (narrow), core (narrow), primocane (narrow), scape (narrow), stalk (narrow), trunk (narrow)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
- PO:0000293 — guard cell — célula guardiana (Spanish, exact), occlusive cell (exact), 孔辺細胞 (Japanese, exact)
Functional Keywords
- cauline leaf , inflorescence meristem , seed , carpel , petal , stem , pollen , guard cell
Literature and News
- Rice JASMONATE RESISTANT 1 is involved in phytochrome and jasmonate signalling. DOI: 10.1111/j.1365-3040.2008.01790.x ; PMID: 18266905
- Integrated metabolite and gene expression profiling revealing phytochrome A regulation of polyamine biosynthesis of Arabidopsis thaliana. DOI: 10.1093/jxb/ern026 ; PMID: 18375607
- Phytochrome-mediated differential gene expression of plant Ran/TC4 small G-proteins. DOI: 10.1007/s00425-008-0745-x ; PMID: 18481083
- Discrete and essential roles of the multiple domains of Arabidopsis FHY3 in mediating phytochrome A signal transduction. DOI: 10.1104/pp.108.120436 ; PMID: 18715961
- Phytochrome nuclear body: an emerging model to study interphase nuclear dynamics and signaling. DOI: 10.1016/j.pbi.2008.06.012 ; PMID: 18691930
- Biochemical characterization of Arabidopsis complexes containing CONSTITUTIVELY PHOTOMORPHOGENIC1 and SUPPRESSOR OF PHYA proteins in light control of plant development. DOI: 10.1105/tpc.107.056580 ; PMID: 18812498
- Detection of spatial-specific phytochrome responses using targeted expression of biliverdin reductase in Arabidopsis. DOI: 10.1104/pp.108.127050 ; PMID: 18971430
- Phytochrome A regulates the intracellular distribution of phototropin 1-green fluorescent protein in Arabidopsis thaliana. DOI: 10.1105/tpc.108.059915 ; PMID: 18952772
- A cell-free system for light-dependent nuclear import of phytochrome. DOI: 10.1111/j.1365-313X.2008.03721.x ; PMID: 18980642
- Photoperiod modifies the diurnal expression profile of VvPHYA and VvPHYB transcripts in field-grown grapevine leaves. DOI: 10.1016/j.jplph.2009.01.005 ; PMID: 19232775
- Phytochrome A mediates rapid red light-induced phosphorylation of Arabidopsis FAR-RED ELONGATED HYPOCOTYL1 in a low fluence response. DOI: 10.1105/tpc.108.061259 ; PMID: 19208901
- The heterotrimeric G-protein complex modulates light sensitivity in Arabidopsis thaliana seed germination. DOI: 10.1111/j.1751-1097.2008.00505.x ; PMID: 19192205
- The histidine kinase-related domain of Arabidopsis phytochrome a controls the spectral sensitivity and the subcellular distribution of the photoreceptor. DOI: 10.1104/pp.109.135988 ; PMID: 19403732
- LAF1 ubiquitination by COP1 controls photomorphogenesis and is stimulated by SPA1. DOI: 10.1038/nature01696 ; PMID: 12827204
- Arabidopsis COP1/SPA1 complex and FHY1/FHY3 associate with distinct phosphorylated forms of phytochrome A in balancing light signaling. DOI: 10.1016/j.molcel.2008.08.003 ; PMID: 18722184
- Phytochromes differentially regulate seed germination responses to light quality and temperature cues during seed maturation. DOI: 10.1111/j.1365-3040.2009.01998.x ; PMID: 19453482
- RED AND FAR-RED INSENSITIVE 2, a RING-domain zinc finger protein, mediates phytochrome-controlled seedling deetiolation responses. DOI: 10.1104/pp.105.073163 ; PMID: 16384903
- Phytochrome-regulated PIL1 derepression is developmentally modulated. DOI: 10.1093/pcp/pcn024 ; PMID: 18296722
- PKS1 plays a role in red-light-based positive phototropism in roots. DOI: 10.1111/j.1365-3040.2008.01797.x ; PMID: 18266898
- FHY1 mediates nuclear import of the light-activated phytochrome A photoreceptor. DOI: 10.1371/journal.pgen.1000143 ; PMID: 18670649
- Phylogenetic relationships of B-related phytochromes in the Brassicaceae: Redundancy and the persistence of phytochrome D. DOI: 10.1016/j.ympev.2008.07.026 ; PMID: 18768161
- Protein identification and mRNA analysis of phytochrome-regulated genes in Arabidopsis under red light. DOI: 10.1007/s11427-009-0045-0 ; PMID: 19381463
- Transgene constructs lacking transcription termination signal induce efficient silencing of endogenous targets in Arabidopsis. DOI: 10.1007/s00438-009-0467-1 ; PMID: 19568771
- Spatial-specific phytochrome responses during de-etiolation in Arabidopsis thaliana. DOI: 10.4161/psb.4.1.7271 ; PMID: 19704706
Gene Resources
- UniProt: A0A178WA36
- EMBL: CACRSJ010000104, LUHQ01000001
- AlphaFoldDB: A0A178WA36
- EnsemblPlants: AT1G05850.1, AT1G05850.2
- Gramene: AT1G05850.1, AT1G05850.2
- KEGG: ath:AT1G05850
- Orthologous matrix: ECSWWSK
- ExpressionAtlas: AT1G05850
- InterPro: IPR000726, IPR016283, IPR023346
- PANTHER: PTHR22595, PTHR22595:SF208
- SUPFAM: SSF53955
- Gene3D: 1.10.530.10, 3.30.20.10
- SWISS-MODEL: A0A178WA36
- Conserved Domain Database: cd00325
Homologs
- Brachypodium distachyon Bradi2g47191
- Cucumis sativus CsChi23
- Oryza sativa bc15;OsCTL1, Cht-3, Cht-2, RCH10, RC24, CHIA1;175, chi11;OsCHI11
Sequences
cDNA Sequence
- >AT1G05850.2
CCACTTCAGTAAAGTAGGGCCCACAACACGAACCAGGCTGTCTTGTCTAACCGACACATACATTACACCAAACGCAATCTTCACCGTTGATTGTTCTCTAATCCAACGGTTGATAGAGACTGCTGATCCGTCACCCGCTTTAGTTTAGTGTTTCTTCTTCCTCCTCTCTTTCCCAAGAATCTCTTCCTTATTTTCTCGGCAACGAAGCAAAAAGGGTAATTTTTGTCGGTTGAATTCACAAGCTAGTTTTCTCGATCTCTCTCTGGATCTATAGCTGATCTGCATTGCGGGTAAGCATTTTTTCCACAAGTACTTATGCCTAATTTTGGTAACGATTTAGCTAAATCTTGACTAGAGAATTTTGTTTCGTTGCTTGGTTATTGAATTCGTGATCTCACATTTGAAGTCTTCGCATATCTTATACATCAATCTCTCCAAGTTGGTATAATATTGGTCAATCTAACAATTTTTCTTAGTTTTTTCACTTAAGAACTTAGAGAGTTCCATGTTTTTGGTTTAATTCTTCCTTTGTTGTTTCTAATCAGCTTTTTGGCATTAAGTGCCTATTGTATAAGCTTGTAGCTGGTATTTGTTCCATAGTTGTAAGCTATGGTGACAATCAGGAGTGGTTCAATCGTGATTTTGGTTCTGCTGGCTGTATCATTTCTGGCCTTGGTTGCCAATGGAGAGGACAAAACGATTAAAGTGAAGAAAGTGAGGGGAAATAAGGTGTGCACGCAAGGATGGGAATGCAGCTGGTGGTCTAAATACTGCTGTAACCAGACGATATCAGATTACTTTCAGGTTTATCAGTTTGAGCAACTCTTTTCCAAAAGGAACACTCCCATTGCTCATGCTGTTGGTTTCTGGGACTACCAGTCTTTCATTACTGCTGCTGCCCTCTTTGAGCCTCTTGGTTTTGGTACCACTGGAGGAAAGCTCATGGGACAGAAAGAAATGGCTGCCTTTCTCGGTCATGTAGCCAGCAAAACGTCCTGTGGCTATGGAGTTGCAACAGGAGGGCCTTTAGCTTGGGGTCTGTGCTACAACAGGGAAATGAGCCCAATGCAATCCTACTGTGACGAGTCCTGGAAATTCAAGTACCCCTGCAGCCCTGGAGCTGAATACTACGGACGCGGTGCCTTACCCATTTACTGGAACTTCAACTACGGAGCAGCTGGGGAAGCCCTGAAAGCTGATCTCTTGAACCACCCTGAGTACATTGAGCAAAACGCGACACTTGCATTCCAAGCTGCAATCTGGAGATGGATGACTCCAATCAAGAGAGCTCAGCCCTCAGCTCACGACATCTTTGTCGGAAACTGGAAACCTACAAAGAACGACACTTTGTCCAAGCGTGGCCCGACTTTTGGCAGCACCATGAACGTCCTCTACGGAGAGTACACATGTGGTCAAGGTTCCATTGATCCAATGAACAACATAATCTCACACTACTTATACTTCCTTGACCTCATGGGTATTGGAAGAGAAGACGCGGGACCAAACGATGAGCTCAGCTGCGCAGAACAGAAACCTTTCAACCCTTCAACTGTACCTTCCTCTTCCTCTTCGTAAGTCTTATGATATATCGCCGTTGCTCTCAAGTCTCTCTTGCTTAATGTTACGTAATAAGTGAAATTGCTTGTGGTAAAAAAAGAAGAAGTGTGTTTTTGTCCCTCTAGAACTTATAATGCAAACAACATTACATTTTATATTTTTCTGTATGTAAAACCATATTTAATTATTGTATTGGAAGAATGTGTGTAAAATAGAGAAAGAGCAAGGAAACATAAATGTGGTTTGCGAATGATATTTGTTTCTATTCGTTTGTTATAAATTTGTTCACATGGTTTTTAGTCTTAAACTCATAACCTAATACTTAAATTAAGGAAACAAATTCCTATG - >AT1G05850.1
CCACTTCAGTAAAGTAGGGCCCACAACACGAACCAGGCTGTCTTGTCTAACCGACACATACATTACACCAAACGCAATCTTCACCGTTGATTGTTCTCTAATCCAACGGTTGATAGAGACTGCTGATCCGTCACCCGCTTTAGTTTAGTGTTTCTTCTTCCTCCTCTCTTTCCCAAGAATCTCTTCCTTATTTTCTCGGCAACGAAGCAAAAAGGGTAATTTTTGTCGGTTGAATTCACAAGCTAGTTTTCTCGATCTCTCTCTGGATCTATAGCTGATCTGCATTGCGGGTAAGCATTTTTTCCACAAGTACTTATGCCTAATTTTGGTAACGATTTAGCTAAATCTTGACTAGAGAATTTTGTTTCGTTGCTTGGTTATTGAATTCGTGATCTCACATTTGAAGTCTTCGCATATCTTATACATCAATCTCTCCAAGTTGGTATAATATTGGTCAATCTAACAATTTTTCTTAGTTTTTTCACTTAAGAACTTAGAGAGTTCCATGTTTTTGGTTTAATTCTTCCTTTGTTGTTTCTAATCAGCTTTTTGGCATTAAGTGCCTATTGTATAAGCTTGTAGCTGGTATTTGTTCCATAGTTGTAAGCTATGGTGACAATCAGGAGTGGTTCAATCGTGATTTTGGTTCTGCTGGCTGTATCATTTCTGGCCTTGGTTGCCAATGGAGAGGACAAAACGATTAAAGTGAAGAAAGTGAGGGGAAATAAGGTGTGCACGCAAGGATGGGAATGCAGCTGGTGGTCTAAATACTGCTGTAACCAGACGATATCAGATTACTTTCAGGTTTATCAGTTTGAGCAACTCTTTTCCAAAAGGAACACTCCCATTGCTCATGCTGTTGGTTTCTGGGACTACCAGTCTTTCATTACTGCTGCTGCCCTCTTTGAGCCTCTTGGTTTTGGTACCACTGGAGGAAAGCTCATGGGACAGAAAGAAATGGCTGCCTTTCTCGGTCATGTAGCCAGCAAAACGTCCTGTGGCTATGGAGTTGCAACAGGAGGGCCTTTAGCTTGGGGTCTGTGCTACAACAGGGAAATGAGCCCAATGCAATCCTACTGTGACGAGTCCTGGAAATTCAAGTACCCCTGCAGCCCTGGAGCTGAATACTACGGACGCGGTGCCTTACCCATTTACTGGAACTTCAACTACGGAGCAGCTGGGGAAGCCCTGAAAGCTGATCTCTTGAACCACCCTGAGTACATTGAGCAAAACGCGACACTTGCATTCCAAGCTGCAATCTGGAGATGGATGACTCCAATCAAGAGAGCTCAGCCCTCAGCTCACGACATCTTTGTCGGAAACTGGAAACCTACAAAGAACGACACTTTGTCCAAGCGTGGCCCGACTTTTGGCAGCACCATGAACGTCCTCTACGGAGAGTACACATGTGGTCAAGGTTCCATTGATCCAATGAACAACATAATCTCACACTACTTATACTTCCTTGACCTCATGGGTATTGGAAGAGAAGACGCGGGACCAAACGATGAGCTCAGCTGCGCAGAACAGAAACCTTTCAACCCTTCAACTGTACCTTCCTCTTCCTCTTCGTAAGTCTTATGATATATCGCCGTTGCTCTCAAGTCTCTCTTGCTTAATGTTACGTAATAAGTGAAATTGCTTGTGGTAAAAAAAGAAGAAGTGTGTTTTTGTCCCTCTAGAACTTATAATGCAAACAACATTACATTTTATATTTTTCTGTATGTAAAACCATATTTAATTATTGTATTGGAAGAATGTGTGTAAAATAGAGAAAGAGCAAGGAAACATAAATGTGGTTTGCGAATGATATTTGTTTCTATTCGTTTGTTATAAATTTGTTCACATGGTTTTTAGTCTTAAACTCATAACCTAATACTTAAATTAAGGAAACAAATTCCTATG
CDS Sequence
- >AT1G05850.2
ATGGTGACAATCAGGAGTGGTTCAATCGTGATTTTGGTTCTGCTGGCTGTATCATTTCTGGCCTTGGTTGCCAATGGAGAGGACAAAACGATTAAAGTGAAGAAAGTGAGGGGAAATAAGGTGTGCACGCAAGGATGGGAATGCAGCTGGTGGTCTAAATACTGCTGTAACCAGACGATATCAGATTACTTTCAGGTTTATCAGTTTGAGCAACTCTTTTCCAAAAGGAACACTCCCATTGCTCATGCTGTTGGTTTCTGGGACTACCAGTCTTTCATTACTGCTGCTGCCCTCTTTGAGCCTCTTGGTTTTGGTACCACTGGAGGAAAGCTCATGGGACAGAAAGAAATGGCTGCCTTTCTCGGTCATGTAGCCAGCAAAACGTCCTGTGGCTATGGAGTTGCAACAGGAGGGCCTTTAGCTTGGGGTCTGTGCTACAACAGGGAAATGAGCCCAATGCAATCCTACTGTGACGAGTCCTGGAAATTCAAGTACCCCTGCAGCCCTGGAGCTGAATACTACGGACGCGGTGCCTTACCCATTTACTGGAACTTCAACTACGGAGCAGCTGGGGAAGCCCTGAAAGCTGATCTCTTGAACCACCCTGAGTACATTGAGCAAAACGCGACACTTGCATTCCAAGCTGCAATCTGGAGATGGATGACTCCAATCAAGAGAGCTCAGCCCTCAGCTCACGACATCTTTGTCGGAAACTGGAAACCTACAAAGAACGACACTTTGTCCAAGCGTGGCCCGACTTTTGGCAGCACCATGAACGTCCTCTACGGAGAGTACACATGTGGTCAAGGTTCCATTGATCCAATGAACAACATAATCTCACACTACTTATACTTCCTTGACCTCATGGGTATTGGAAGAGAAGACGCGGGACCAAACGATGAGCTCAGCTGCGCAGAACAGAAACCTTTCAACCCTTCAACTGTACCTTCCTCTTCCTCTTCGTAA - >AT1G05850.1
ATGGTGACAATCAGGAGTGGTTCAATCGTGATTTTGGTTCTGCTGGCTGTATCATTTCTGGCCTTGGTTGCCAATGGAGAGGACAAAACGATTAAAGTGAAGAAAGTGAGGGGAAATAAGGTGTGCACGCAAGGATGGGAATGCAGCTGGTGGTCTAAATACTGCTGTAACCAGACGATATCAGATTACTTTCAGGTTTATCAGTTTGAGCAACTCTTTTCCAAAAGGAACACTCCCATTGCTCATGCTGTTGGTTTCTGGGACTACCAGTCTTTCATTACTGCTGCTGCCCTCTTTGAGCCTCTTGGTTTTGGTACCACTGGAGGAAAGCTCATGGGACAGAAAGAAATGGCTGCCTTTCTCGGTCATGTAGCCAGCAAAACGTCCTGTGGCTATGGAGTTGCAACAGGAGGGCCTTTAGCTTGGGGTCTGTGCTACAACAGGGAAATGAGCCCAATGCAATCCTACTGTGACGAGTCCTGGAAATTCAAGTACCCCTGCAGCCCTGGAGCTGAATACTACGGACGCGGTGCCTTACCCATTTACTGGAACTTCAACTACGGAGCAGCTGGGGAAGCCCTGAAAGCTGATCTCTTGAACCACCCTGAGTACATTGAGCAAAACGCGACACTTGCATTCCAAGCTGCAATCTGGAGATGGATGACTCCAATCAAGAGAGCTCAGCCCTCAGCTCACGACATCTTTGTCGGAAACTGGAAACCTACAAAGAACGACACTTTGTCCAAGCGTGGCCCGACTTTTGGCAGCACCATGAACGTCCTCTACGGAGAGTACACATGTGGTCAAGGTTCCATTGATCCAATGAACAACATAATCTCACACTACTTATACTTCCTTGACCTCATGGGTATTGGAAGAGAAGACGCGGGACCAAACGATGAGCTCAGCTGCGCAGAACAGAAACCTTTCAACCCTTCAACTGTACCTTCCTCTTCCTCTTCGTAA
Protein Sequence
- >AT1G05850.2
MVTIRSGSIVILVLLAVSFLALVANGEDKTIKVKKVRGNKVCTQGWECSWWSKYCCNQTISDYFQVYQFEQLFSKRNTPIAHAVGFWDYQSFITAAALFEPLGFGTTGGKLMGQKEMAAFLGHVASKTSCGYGVATGGPLAWGLCYNREMSPMQSYCDESWKFKYPCSPGAEYYGRGALPIYWNFNYGAAGEALKADLLNHPEYIEQNATLAFQAAIWRWMTPIKRAQPSAHDIFVGNWKPTKNDTLSKRGPTFGSTMNVLYGEYTCGQGSIDPMNNIISHYLYFLDLMGIGREDAGPNDELSCAEQKPFNPSTVPSSSSS - >AT1G05850.1
MVTIRSGSIVILVLLAVSFLALVANGEDKTIKVKKVRGNKVCTQGWECSWWSKYCCNQTISDYFQVYQFEQLFSKRNTPIAHAVGFWDYQSFITAAALFEPLGFGTTGGKLMGQKEMAAFLGHVASKTSCGYGVATGGPLAWGLCYNREMSPMQSYCDESWKFKYPCSPGAEYYGRGALPIYWNFNYGAAGEALKADLLNHPEYIEQNATLAFQAAIWRWMTPIKRAQPSAHDIFVGNWKPTKNDTLSKRGPTFGSTMNVLYGEYTCGQGSIDPMNNIISHYLYFLDLMGIGREDAGPNDELSCAEQKPFNPSTVPSSSSS