Information report for AT1G05805
Gene Details
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Functional Descriptions
- PO:0000013 — cauline leaf — hoja caulinar (Spanish, exact), 茎生葉、茎葉 (Japanese, exact)
- PO:0000230 — inflorescence meristem — meristema de la inflorescencia (Spanish, exact), 花序分裂組織 (Japanese, exact)
- PO:0009010 — seed — semilla (Spanish, exact), 種子 (Japanese, exact), pyrene (narrow), diaspore (broad)
- PO:0009030 — carpel — carpelo (Spanish, exact), 心皮 (Japanese, exact), Poaceae carpel (narrow), Zea carpel (narrow), pistil (broad)
- PO:0009032 — petal — pétalo (Spanish, exact), 花弁 (Japanese, exact)
- PO:0009047 — stem — caña (Spanish, exact), culm (exact), eje primario (Spanish, exact), primary axis (exact), primary stem (exact), tallo (Spanish, exact), tronco (Spanish, exact), 茎 (Japanese, exact), bole (narrow), cane (narrow), caudex (narrow), caudices (narrow), core (narrow), primocane (narrow), scape (narrow), stalk (narrow), trunk (narrow)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
- PO:0000293 — guard cell — célula guardiana (Spanish, exact), occlusive cell (exact), 孔辺細胞 (Japanese, exact)
Functional Keywords
- cauline leaf , inflorescence meristem , seed , carpel , petal , stem , pollen , guard cell
Literature and News
- Light regulation of the Arabidopsis respiratory chain. Multiple discrete photoreceptor responses contribute to induction of type II NAD(P)H dehydrogenase genes. DOI: 10.1104/pp.104.046698 ; PMID: 15333756
- Phytochrome phosphorylation modulates light signaling by influencing the protein-protein interaction. DOI: 10.1105/tpc.104.023879 ; PMID: 15377754
- Structural analysis of Arabidopsis thaliana nucleoside diphosphate kinase-2 for phytochrome-mediated light signaling. DOI: 10.1016/j.jmb.2004.08.054 ; PMID: 15465053
- Isolation and characterization of a cDNA encoding phytochrome A in the non-photosynthetic parasitic plant, Orobanche minor Sm. DOI: 10.1271/bbb.69.71 ; PMID: 15665470
- A new type of mutation in phytochrome A causes enhanced light sensitivity and alters the degradation and subcellular partitioning of the photoreceptor. DOI: 10.1111/j.1365-313X.2004.02286.x ; PMID: 15610357
- The roles of phytochromes in elongation and gravitropism of roots. DOI: 10.1093/pcp/pci038 ; PMID: 15695459
- Phytochrome evolution in green and nongreen plants. DOI: 10.1093/jhered/esi032 ; PMID: 15695552
- NDPK2 as a signal transducer in the phytochrome-mediated light signaling. DOI: 10.1074/jbc.M408965200 ; PMID: 15561724
- Hypocotyl growth orientation in blue light is determined by phytochrome A inhibition of gravitropism and phototropin promotion of phototropism. DOI: 10.1111/j.1365-313X.2004.02256.x ; PMID: 15546364
- Cryptochromes and phytochromes synergistically regulate Arabidopsis root greening under blue light. DOI: 10.1093/pcp/pch205 ; PMID: 15653798
- Phytochrome-specific type 5 phosphatase controls light signal flux by enhancing phytochrome stability and affinity for a signal transducer. DOI: 10.1016/j.cell.2004.12.019 ; PMID: 15707897
- The nuclear localization signal and the C-terminal region of FHY1 are required for transmission of phytochrome A signals. DOI: 10.1111/j.1365-313X.2004.02212.x ; PMID: 15469493
- Degradation of phytochrome interacting factor 3 in phytochrome-mediated light signaling. DOI: 10.1093/pcp/pch125 ; PMID: 15356322
- Photoreceptor ubiquitination by COP1 E3 ligase desensitizes phytochrome A signaling. DOI: 10.1101/gad.1187804 ; PMID: 15031264
- HFR1, a putative bHLH transcription factor, mediates both phytochrome A and cryptochrome signalling. DOI: 10.1046/j.1365-313x.2003.01770.x ; PMID: 12795702
- Changes in photoperiod or temperature alter the functional relationships between phytochromes and reveal roles for phyD and phyE. DOI: 10.1104/pp.102.018135 ; PMID: 12692350
- The negatively acting factors EID1 and SPA1 have distinct functions in phytochrome A-specific light signaling. DOI: 10.1104/pp.010811 ; PMID: 11891264
Gene Resources
- UniProt: A0A178W6Y0
- EMBL: LR881466, LUHQ01000001
- AlphaFoldDB: A0A178W6Y0
- EnsemblPlants: AT1G05805.1
- Gramene: AT1G05805.1
- KEGG: ath:AT1G05805
- Orthologous matrix: HCTCGCK
- ExpressionAtlas: AT1G05805
- InterPro: IPR011598, IPR036638, IPR045239
- PANTHER: PTHR16223, PTHR16223:SF151
- SUPFAM: SSF47459
- PROSITE: PS50888
- Gene3D: 4.10.280.10
- SWISS-MODEL: A0A178W6Y0
- Conserved Domain Database: cd11393
Homologs
- Brassica napus GSBRNA2T00003204001, GSBRNA2T00031962001
- Brassica oleracea XP_013638209.1, XP_013638439.1
- Brassica rapa XP_009119114.1
- Populus trichocarpa Potri.002G231700.1
- Pyrus bretschneideri Pbr031107.2
- Raphanus raphanistrum RrC796_p6
- Ricinus communis 30149.m000231
- Ziziphus jujuba XP_015887123.1, XP_015887122.1, XP_015887121.1
Sequences
cDNA Sequence
- >AT1G05805.1
TTATATACACTAGAGAAAAATAATTGCATTCCACTGAAAACCTCAACATCTTGGGAAATTTAAACTTAATCAAAGACATCGCAAATGTTGCTTATCTTTTTATCAAGCCCAGCCCACATATTCGCGGCCCCAAAGCCCAAAGGTTAAGCTGACTCGTTACAAAATAAATAAGTATTAATAAAGGTTTTTGATTGGCTTATTTCGGTTTAAATTTAATACCATATCTTTCGGAAGATCACGTGAGACACATGTGACATCCAACGAATAGCCAATCGCTGAAAAGTGAAGACTTTTTGTTACCCCATAAACAAAAGCATCATCTCTCTCTCATCTTTTATTTTTCTTTTAGAAACCAAACTTTTCAGATTTCTCTCTCTCCATTTGGCGATAGAAGAAGTCATGTACCAATCATCATCCTCCACGTCATCATCATCGCAGAGATCATCGCTTCCCGGCGGCGGAGGACTGATCCGTTACGGCTCAGCTCCGGGATCGTTTCTAAACTCTGTGGTTGACGAAGTCATCGGAGGAGGCTCATCAAACGCTCGTGACTTCACCGGCTATCAACCGTCGTCGGATAACTTCATCGGTAACTTTTTCACCGGAGCTGCTGACTCATCCTCGCTGAGATCCGATTCGACGACTTGTGGAGTCAACAACTCATCCGACGGACAGAAACAGCTAGGCAATAACAATAATAATAATAGTAATAAAGATATCTTCCTCGACAGATCCTACGGTGGATTCAACGAGATCTCGCAACAACACAAGAGCAACGACATCGGAGGAGGAAACAGCTCAGGATCTTACTCTCTCGCTAGACAACGTAGCTCTCCCGCCGATTTCTTCACCTACCTCGCCTCAGATAAAAACAATTTCTCGTTGAACCAACCAACCAGTGATTATAGTCCGCAAGGAGGGTCTAATGGGGGACGAGGACATTCCAGATTGAAGTCTCAGCTAAGCTTCACGAATCACGACTCTCTGGCTCGGATCAACGAGGTCAATGAGACCCCAGTCCACGACGGTTCAGGCCATTCGTTTTCTGCGGCTAGCTTTGGTGCAGCCACTACTGATTCTTGGGATGACGGTTCCGGTTCGATAGGGTTTACCGTGACTAGGCCCAGTAAACGATCCAAGGACATGGACTCTGGTCTCTTTTCGCAGTATAGTCTTCCTTCAGACACTTCAATGAACTACATGGATAACTTCATGCAGCTTCCAGAAGATTCTGTACCCTGCAAAATCCGGGCCAAACGCGGCTGCGCCACCCATCCTAGAAGCATCGCTGAGCGGGAGAGGAGAACGAGAATAAGTGGGAAGCTAAAGAAGCTACAAGATCTTGTCCCCAACATGGATAAGCAAACAAGCTATTCAGACATGCTGGATTTAGCTGTACAACACATCAAAGGCCTTCAGCATCAACTTCAGAATTTGAAAAAAGATCAAGAGAATTGCACGTGTGGGTGCAGTGAGAAACCAAGCTAGCTCAAACCCAAAGGTAGGGTCATCCTAATTTTATTTGCATTGTTCCGATTTTATCATATGAGAGAATTAGAGAAGATGTAAATAAAATAGATTATATTAAATGTCTAATCCTCTTATAATTAAGCTCCTCATTCGTTATCATTATAAGATAGAACAGTGACAATTGTCCATTATGTTTTTGTTTCAAGTTTATGTTTTGAGTGTCGCCTATTTTGTAAGGATTATGCTATGAATTCTGAAACTAATTCGAGTTATGATCATAAGCAAAGCAAGCTAGCATCCATTATATATATGACTTTCTAATTTG
CDS Sequence
- >AT1G05805.1
ATGTACCAATCATCATCCTCCACGTCATCATCATCGCAGAGATCATCGCTTCCCGGCGGCGGAGGACTGATCCGTTACGGCTCAGCTCCGGGATCGTTTCTAAACTCTGTGGTTGACGAAGTCATCGGAGGAGGCTCATCAAACGCTCGTGACTTCACCGGCTATCAACCGTCGTCGGATAACTTCATCGGTAACTTTTTCACCGGAGCTGCTGACTCATCCTCGCTGAGATCCGATTCGACGACTTGTGGAGTCAACAACTCATCCGACGGACAGAAACAGCTAGGCAATAACAATAATAATAATAGTAATAAAGATATCTTCCTCGACAGATCCTACGGTGGATTCAACGAGATCTCGCAACAACACAAGAGCAACGACATCGGAGGAGGAAACAGCTCAGGATCTTACTCTCTCGCTAGACAACGTAGCTCTCCCGCCGATTTCTTCACCTACCTCGCCTCAGATAAAAACAATTTCTCGTTGAACCAACCAACCAGTGATTATAGTCCGCAAGGAGGGTCTAATGGGGGACGAGGACATTCCAGATTGAAGTCTCAGCTAAGCTTCACGAATCACGACTCTCTGGCTCGGATCAACGAGGTCAATGAGACCCCAGTCCACGACGGTTCAGGCCATTCGTTTTCTGCGGCTAGCTTTGGTGCAGCCACTACTGATTCTTGGGATGACGGTTCCGGTTCGATAGGGTTTACCGTGACTAGGCCCAGTAAACGATCCAAGGACATGGACTCTGGTCTCTTTTCGCAGTATAGTCTTCCTTCAGACACTTCAATGAACTACATGGATAACTTCATGCAGCTTCCAGAAGATTCTGTACCCTGCAAAATCCGGGCCAAACGCGGCTGCGCCACCCATCCTAGAAGCATCGCTGAGCGGGAGAGGAGAACGAGAATAAGTGGGAAGCTAAAGAAGCTACAAGATCTTGTCCCCAACATGGATAAGCAAACAAGCTATTCAGACATGCTGGATTTAGCTGTACAACACATCAAAGGCCTTCAGCATCAACTTCAGAATTTGAAAAAAGATCAAGAGAATTGCACGTGTGGGTGCAGTGAGAAACCAAGCTAG
Protein Sequence
- >AT1G05805.1
MYQSSSSTSSSSQRSSLPGGGGLIRYGSAPGSFLNSVVDEVIGGGSSNARDFTGYQPSSDNFIGNFFTGAADSSSLRSDSTTCGVNNSSDGQKQLGNNNNNNSNKDIFLDRSYGGFNEISQQHKSNDIGGGNSSGSYSLARQRSSPADFFTYLASDKNNFSLNQPTSDYSPQGGSNGGRGHSRLKSQLSFTNHDSLARINEVNETPVHDGSGHSFSAASFGAATTDSWDDGSGSIGFTVTRPSKRSKDMDSGLFSQYSLPSDTSMNYMDNFMQLPEDSVPCKIRAKRGCATHPRSIAERERRTRISGKLKKLQDLVPNMDKQTSYSDMLDLAVQHIKGLQHQLQNLKKDQENCTCGCSEKPS