Gene Details:
- Gene ID: AT1G05750
- Gene Symbol: CLB19, PDE247
- Gene Name: CHLOROPLAST BIOGENESIS 19, pigment defective 247
- Description: Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
- TAIR Accession:
- Genome: Araport11_genome_release
- Species: Arabidopsis thaliana
Transcripts:
Plant Ontology Annotations:
- PO:0009010 — seed — semilla (Spanish, exact), 種子 (Japanese, exact), pyrene (narrow), diaspore (broad)
- PO:0000084 — plant sperm cell — célula espermática o esperma (Spanish, exact), male gamete (exact), microgamete (exact), 植物精子細胞 (Japanese, exact), sperm nucleus (related), sperm cell (broad)
- PO:0000293 — guard cell — célula guardiana (Spanish, exact), occlusive cell (exact), 孔辺細胞 (Japanese, exact)
Function-related keywords:
Literature:
- Recombinant phytochrome A in yeast differs by its spectroscopic and photochemical properties from the major phyA' and is close to the minor phyA": evidence for posttranslational modification of the pigment in plants. DOI: 10.1562/0031-8655(2001)073<0692:rpaiyd>2.0.co;2 ; PMID: 11421077
- Structural requirement of bilin chromophore for the photosensory specificity of phytochromes A and B. DOI: 10.1073/pnas.062713399 ; PMID: 11930018
- PIF4, a phytochrome-interacting bHLH factor, functions as a negative regulator of phytochrome B signaling in Arabidopsis. DOI: 10.1093/emboj/21.10.2441 ; PMID: 12006496
- Missense mutation in the PAS2 domain of phytochrome A impairs subnuclear localization and a subset of responses. DOI: 10.1105/tpc.000521 ; PMID: 12119377
- Nucleocytoplasmic partitioning of the plant photoreceptors phytochrome A, B, C, D, and E is regulated differentially by light and exhibits a diurnal rhythm. DOI: 10.1105/tpc.001156 ; PMID: 12119373
- The serine-rich N-terminal domain of oat phytochrome a helps regulate light responses and subnuclear localization of the photoreceptor. DOI: 10.1104/pp.010977 ; PMID: 12114567
- Phytochrome signalling modulates the SA-perceptive pathway in Arabidopsis. DOI: 10.1046/j.1365-313x.2002.01338.x ; PMID: 12100485
- CP3 is involved in negative regulation of phytochrome A signalling in Arabidopsis. DOI: 10.1007/s00425-002-0784-7 ; PMID: 12172837
- Light signalling mediated by phytochrome plays an important role in cold-induced gene expression through the C-repeat/dehydration responsive element (C/DRE) in Arabidopsis thaliana. DOI: 10.1046/j.1365-313x.2002.01249.x ; PMID: 12148528
- Phytochrome-Deficient hy1 and hy2 Long Hypocotyl Mutants of Arabidopsis Are Defective in Phytochrome Chromophore Biosynthesis. DOI: 10.1105/tpc.3.11.1177 ; PMID: 12324588
- SPA1, a component of phytochrome A signal transduction, regulates the light signaling current. DOI: 10.1007/s00425-002-0801-x ; PMID: 12244439
- Photoresponses of Light-Grown phyA Mutants of Arabidopsis (Phytochrome A Is Required for the Perception of Daylength Extensions). DOI: 10.1104/pp.105.1.141 ; PMID: 12232194
- Phytochrome A and Phytochrome B Have Overlapping but Distinct Functions in Arabidopsis Development. DOI: 10.1104/pp.104.4.1139 ; PMID: 12232154
- The Induction of Seed Germination in Arabidopsis thaliana Is Regulated Principally by Phytochrome B and Secondarily by Phytochrome A. DOI: 10.1104/pp.104.2.363 ; PMID: 12232088
- Isolation and Initial Characterization of Arabidopsis Mutants That Are Deficient in Phytochrome A. DOI: 10.1104/pp.102.1.269 ; PMID: 12231818
- and PHYB-GUS Transgenes in Arabidopsis thaliana Seedlings. DOI: 10.1104/pp.107.2.523 ; PMID: 12228380
Sequences:
cDNA Sequence
- >AT1G05750.2
ACCATCTCAATCGAATGGGTCTCCTTCCCGTCGTCGGAATTACTTCGCCGGCGCTCATCACCCACAAAAATCACGCCAATCCAAAGATACAGAGACATAATCAATCTACCTCCGAGACCACTGTTTCATGGACTTCTCGCATCAATCTCCTCACGCGCAATGGTCGATTAGCGGAGGCAGCGAAGGAATTCTCCGATATGACACTCGCCGGCGTAGAGCCTAACCACATCACTTTCATAGCTCTACTCTCCGGGTGTGGTGATTTTACCTCCGGAAGTGAAGCCTTGGGCGATTTGCTTCATGGGTATGCTTGTAAACTTGGTCTTGATAGAAACCATGTCATGGTTGGCACCGCAATTATCGGCATGTACTCCAAACGCGGCCGTTTTAAGAAGGCTAGATTGGTTTTTGATTACATGGAAGATAAAAATTCGGTTACTTGGAATACAATGATCGATGGGTACATGAGAAGTGGTCAAGTCGATAACGCTGCTAAGATGTTCGACAAAATGCCTGAACGAGACTTGATTTCTTGGACGGCTATGATAAATGGCTTTGTTAAGAAAGGTTATCAAGAGGAAGCTTTGTTATGGTTCCGTGAAATGCAGATTTCTGGAGTAAAACCAGATTACGTTGCTATTATTGCTGCTCTTAACGCTTGCACAAACCTTGGTGCTCTCTCATTTGGATTATGGGTACATCGTTATGTTTTGAGTCAGGATTTCAAGAACAATGTGAGGGTGAGTAATTCACTGATCGATTTGTATTGTCGATGCGGGTGTGTGGAGTTTGCTCGACAAGTTTTTTACAACATGGAGAAACGAACCGTAGTTTCGTGGAATTCAGTCATTGTTGGTTTTGCTGCTAATGGAAATGCACATGAATCATTAGTCTACTTCAGGAAAATGCAAGAGAAAGGCTTTAAACCTGACGCAGTCACTTTCACTGGGGCGCTTACCGCGTGTAGCCATGTAGGTCTAGTTGAAGAAGGTCTTCGATATTTTCAAATTATGAAATGTGATTACAGAATCTCGCCTCGAATTGAGCATTATGGATGCTTAGTGGATTTGTATAGTCGGGCTGGGAGATTGGAAGACGCTTTGAAGTTGGTGCAGAGCATGCCAATGAAGCCAAATGAAGTTGTGATTGGATCGTTGCTTGCAGCTTGCAGCAATCATGGGAACAATATCGTCTTAGCAGAGAGGCTGATGAAGCATCTTACCGACCTGAATGTGAAAAGCCATTCAAATTATGTGATTCTCTCGAATATGTATGCTGCTGATGGAAAATGGGAAGGAGCAAGTAAGATGAGAAGGAAGATGAAGGGTCTCGGTCTAAAAAAGCAGCCTGGGTTTAGTTCGATAGAGATTGATGATTGCATGCATGTGTTCATGGCCGGTGACAATGCCCATGTTGAGACCACTTATATCCGCGAGGTCCTGGAGCTTATTTCTTCTGATTTGCGATTACAGGGCTGTGTAGTTGAAACCCTTGCTGGTGATCTCCTCAATGCTTGAAATCCAGGAACCTCCACATCCCATTTTTTGTTCAAGTCCTGAGCGTGAGCATTTGCTCAAATTGGTTGACCGCAAAGAAGCCTTACAGTGGTCTTAGTCTTAGAGTCTTAGAGATGCTGAACGCTAGAATATACCTCATTACATAACCATTGTCGCTTCCTCCAACCTTTTTGCCAGGCCCTACCAATAAAGATCTGGGTGTATATCGCTATTTAAACCTGCTGAATAGAGGCCACACAAGGATATGGTGCTCCCGTGTTTTGTAAGCTTCGAATCCAAGCTATGTGGCCTTGGCGGCCGTCTCCTCGTGCTAATAAGAACTGTTTTTGGGCGGAGATAAACACCAATGTACTGTAGTCCCGAGGCATCATAAGTCCCATGGAAACCGCCGAACTGAGGAGATTTCCCGAGTTTAAAAGCAAATTTGTCGTTGCTCGAACCGGAGGTGCCAAAAGGACCGTACTCGCTAGTGTTGGTATTGAATTTGAGAGACCTCATGTGAGGATTGTTGGCTTCATACTTGTAATACTCTCCACTGATTCCAGTTATGTACTCATGCGGATAGTTGAGCTCTATCTGCTGGGTCCAAATCACATATTAAGTTATAAAAAAAAAGTTATAACCATGTTCTTAGCATTTTAGTTGGAAGTAGAAATTGTGACGGAGAAAAAAGAAGAGTCAAAAATCAGACTTACAACGTCAAACATGTTGCCGGAAAATGGACCGTGACGATCGGATAAAACGAGTTTTCCGTCCATCACGAACTGGAATTGGATAGACATAATTCCAGCGACGCCATGAGATAGAAAAATCTGAGAGATGAAGCCATCGTGAGATCCTTCGTCCCAGTTTACAATTGTAGTGCTTCTAGCATCATGCTTCCCTACAGGTCCTATCTTCATTTTCCCTTTCTTTTTTTTTGTACGACCAAAACTCAAAAGCTCTTTTGTTTGGTTACATAACGAAAATAGCATAACATTAATATATATACATGTAGAGATTCAAAGTTCTCTAACTCTGAAGTCTCAGATTGGAATATGCCTATCCAATTTGATATTAGTAATTCATCTTACGATTCATTGTTTTATTGCATTTATCTTTGCTTCTTCTCTCCATTACCCAATTTGTTTTAATGAAATGACTAATAGATTTGTTACTAGAGATTCTTTAAGATAATGTTCTTATTTTGACGCCTC - >AT1G05750.1
ACCATCTCAATCGAATGGGTCTCCTTCCCGTCGTCGGAATTACTTCGCCGGCGCTCATCACCCACAAAAATCACGCCAATCCAAAGATACAGAGACATAATCAATCTACCTCCGAGACCACTGTTTCATGGACTTCTCGCATCAATCTCCTCACGCGCAATGGTCGATTAGCGGAGGCAGCGAAGGAATTCTCCGATATGACACTCGCCGGCGTAGAGCCTAACCACATCACTTTCATAGCTCTACTCTCCGGGTGTGGTGATTTTACCTCCGGAAGTGAAGCCTTGGGCGATTTGCTTCATGGGTATGCTTGTAAACTTGGTCTTGATAGAAACCATGTCATGGTTGGCACCGCAATTATCGGCATGTACTCCAAACGCGGCCGTTTTAAGAAGGCTAGATTGGTTTTTGATTACATGGAAGATAAAAATTCGGTTACTTGGAATACAATGATCGATGGGTACATGAGAAGTGGTCAAGTCGATAACGCTGCTAAGATGTTCGACAAAATGCCTGAACGAGACTTGATTTCTTGGACGGCTATGATAAATGGCTTTGTTAAGAAAGGTTATCAAGAGGAAGCTTTGTTATGGTTCCGTGAAATGCAGATTTCTGGAGTAAAACCAGATTACGTTGCTATTATTGCTGCTCTTAACGCTTGCACAAACCTTGGTGCTCTCTCATTTGGATTATGGGTACATCGTTATGTTTTGAGTCAGGATTTCAAGAACAATGTGAGGGTGAGTAATTCACTGATCGATTTGTATTGTCGATGCGGGTGTGTGGAGTTTGCTCGACAAGTTTTTTACAACATGGAGAAACGAACCGTAGTTTCGTGGAATTCAGTCATTGTTGGTTTTGCTGCTAATGGAAATGCACATGAATCATTAGTCTACTTCAGGAAAATGCAAGAGAAAGGCTTTAAACCTGACGCAGTCACTTTCACTGGGGCGCTTACCGCGTGTAGCCATGTAGGTCTAGTTGAAGAAGGTCTTCGATATTTTCAAATTATGAAATGTGATTACAGAATCTCGCCTCGAATTGAGCATTATGGATGCTTAGTGGATTTGTATAGTCGGGCTGGGAGATTGGAAGACGCTTTGAAGTTGGTGCAGAGCATGCCAATGAAGCCAAATGAAGTTGTGATTGGATCGTTGCTTGCAGCTTGCAGCAATCATGGGAACAATATCGTCTTAGCAGAGAGGCTGATGAAGCATCTTACCGACCTGAATGTGAAAAGCCATTCAAATTATGTGATTCTCTCGAATATGTATGCTGCTGATGGAAAATGGGAAGGAGCAAGTAAGATGAGAAGGAAGATGAAGGGTCTCGGTCTAAAAAAGCAGCCTGGGTTTAGTTCGATAGAGATTGATGATTGCATGCATGTGTTCATGGCCGGTGACAATGCCCATGTTGAGACCACTTATATCCGCGAGGTCCTGGAGCTTATTTCTTCTGATTTGCGATTACAGGGCTGTGTAGTTGAAACCCTTGCTGGTGATCTCCTCAATGCTTGAAATCCAGGAACCTCCACATCCCATTTTTTGTTCAAGTCCTGAGCGTGAGCATTTGCTCAAATTGGTTGACCGCAAAGAAGCCTTACAGTGGTCTTAGTCTTAGAGTCTTAGAGATGCTGAACGCTAGAATATACCTCATTACATAACCATTGTCGCTTCCTCCAACCTTTTTGCCAGGCCCTACCAATAAAGATCTGGGTGTATATCGCTATTTAAACCTGCTGAATAGAGGCCACACAAGGATATGGTGCTCCCGTGTTTTGTAAGCTTCGAATCCAAGCTATGTGGCCTTGGCGGCCGTCTCCTCGTGCTAATAAGAACTGTTTTTGGGCGGAGATAAACACCAATGTACTGTAGTCCCGAGGCATCATAAGTCCCATGGAAACCGCCGAACTGAGGAGATTTCCCGAGTTTAAAAGCAAATTTGTCGTTGCTCGAACCGGAGGTGCCAAAAGGACCGTACTCGCTAGTGTTGGTATTGAATTTGAGAGACCTCATGTGAGGATTGTTGGCTTCATACTTGTAATACTCTCCACTGATTCCAGTTATGTACTCATGCGGATAGTTGAGCTCTATCTGCTGGGTCCAAATCACATATTAAGTTATAAAAAAAAAGTTATAACCATGTTCTTAGCATTTTAGTTGGAAGTAGAAATTGTGACGGAGAAAAAAGAAGAGTCAAAAATCAGACTTACAACGTCAAACATGTTGCCGGAAAATGGACCGTGACGATCGGATAAAACGAGTTTTCCGTCCATCACGAACTGGAATTGGATAGACATAATTCCAGCGACGCCATGAGATAGAAAAATCTGAGAGATGAAGCCATCGTGAGATCCTTCGTCCCAGTTTACAATTGTAGTGCTTCTAGCATCATGCTTCCCTACAGGTCCTATCTTCATTTTCCCTTTCTTTTTTTTTGTACGACCAAAACTCAAAAGCTCTTTTGTTTGGTTACATAACGAAAATAGCATAACATTAATATATATACATGTAGAGATTCAAAGTTCTCTAACTCTGAAGTCTCAGATTGGAATATGCCTATCCAATTTGATATTAGTAATTCATCTTACGATTCATTGTTTTATTGCATTTATCTTTGCTTCTTCTCTCCATTACCCAATTTGTTTTAATGAAATGACTAATAGATTTGTTACTAGAGATTCTTTAAGATAATGTTCTTATTTTGACGCCTC
CDS Sequence
- >AT1G05750.2
ATGGGTCTCCTTCCCGTCGTCGGAATTACTTCGCCGGCGCTCATCACCCACAAAAATCACGCCAATCCAAAGATACAGAGACATAATCAATCTACCTCCGAGACCACTGTTTCATGGACTTCTCGCATCAATCTCCTCACGCGCAATGGTCGATTAGCGGAGGCAGCGAAGGAATTCTCCGATATGACACTCGCCGGCGTAGAGCCTAACCACATCACTTTCATAGCTCTACTCTCCGGGTGTGGTGATTTTACCTCCGGAAGTGAAGCCTTGGGCGATTTGCTTCATGGGTATGCTTGTAAACTTGGTCTTGATAGAAACCATGTCATGGTTGGCACCGCAATTATCGGCATGTACTCCAAACGCGGCCGTTTTAAGAAGGCTAGATTGGTTTTTGATTACATGGAAGATAAAAATTCGGTTACTTGGAATACAATGATCGATGGGTACATGAGAAGTGGTCAAGTCGATAACGCTGCTAAGATGTTCGACAAAATGCCTGAACGAGACTTGATTTCTTGGACGGCTATGATAAATGGCTTTGTTAAGAAAGGTTATCAAGAGGAAGCTTTGTTATGGTTCCGTGAAATGCAGATTTCTGGAGTAAAACCAGATTACGTTGCTATTATTGCTGCTCTTAACGCTTGCACAAACCTTGGTGCTCTCTCATTTGGATTATGGGTACATCGTTATGTTTTGAGTCAGGATTTCAAGAACAATGTGAGGGTGAGTAATTCACTGATCGATTTGTATTGTCGATGCGGGTGTGTGGAGTTTGCTCGACAAGTTTTTTACAACATGGAGAAACGAACCGTAGTTTCGTGGAATTCAGTCATTGTTGGTTTTGCTGCTAATGGAAATGCACATGAATCATTAGTCTACTTCAGGAAAATGCAAGAGAAAGGCTTTAAACCTGACGCAGTCACTTTCACTGGGGCGCTTACCGCGTGTAGCCATGTAGGTCTAGTTGAAGAAGGTCTTCGATATTTTCAAATTATGAAATGTGATTACAGAATCTCGCCTCGAATTGAGCATTATGGATGCTTAGTGGATTTGTATAGTCGGGCTGGGAGATTGGAAGACGCTTTGAAGTTGGTGCAGAGCATGCCAATGAAGCCAAATGAAGTTGTGATTGGATCGTTGCTTGCAGCTTGCAGCAATCATGGGAACAATATCGTCTTAGCAGAGAGGCTGATGAAGCATCTTACCGACCTGAATGTGAAAAGCCATTCAAATTATGTGATTCTCTCGAATATGTATGCTGCTGATGGAAAATGGGAAGGAGCAAGTAAGATGAGAAGGAAGATGAAGGGTCTCGGTCTAAAAAAGCAGCCTGGGTTTAGTTCGATAGAGATTGATGATTGCATGCATGTGTTCATGGCCGGTGACAATGCCCATGTTGAGACCACTTATATCCGCGAGGTCCTGGAGCTTATTTCTTCTGATTTGCGATTACAGGGCTGTGTAGTTGAAACCCTTGCTGGTGATCTCCTCAATGCTTGA - >AT1G05750.1
ATGGGTCTCCTTCCCGTCGTCGGAATTACTTCGCCGGCGCTCATCACCCACAAAAATCACGCCAATCCAAAGATACAGAGACATAATCAATCTACCTCCGAGACCACTGTTTCATGGACTTCTCGCATCAATCTCCTCACGCGCAATGGTCGATTAGCGGAGGCAGCGAAGGAATTCTCCGATATGACACTCGCCGGCGTAGAGCCTAACCACATCACTTTCATAGCTCTACTCTCCGGGTGTGGTGATTTTACCTCCGGAAGTGAAGCCTTGGGCGATTTGCTTCATGGGTATGCTTGTAAACTTGGTCTTGATAGAAACCATGTCATGGTTGGCACCGCAATTATCGGCATGTACTCCAAACGCGGCCGTTTTAAGAAGGCTAGATTGGTTTTTGATTACATGGAAGATAAAAATTCGGTTACTTGGAATACAATGATCGATGGGTACATGAGAAGTGGTCAAGTCGATAACGCTGCTAAGATGTTCGACAAAATGCCTGAACGAGACTTGATTTCTTGGACGGCTATGATAAATGGCTTTGTTAAGAAAGGTTATCAAGAGGAAGCTTTGTTATGGTTCCGTGAAATGCAGATTTCTGGAGTAAAACCAGATTACGTTGCTATTATTGCTGCTCTTAACGCTTGCACAAACCTTGGTGCTCTCTCATTTGGATTATGGGTACATCGTTATGTTTTGAGTCAGGATTTCAAGAACAATGTGAGGGTGAGTAATTCACTGATCGATTTGTATTGTCGATGCGGGTGTGTGGAGTTTGCTCGACAAGTTTTTTACAACATGGAGAAACGAACCGTAGTTTCGTGGAATTCAGTCATTGTTGGTTTTGCTGCTAATGGAAATGCACATGAATCATTAGTCTACTTCAGGAAAATGCAAGAGAAAGGCTTTAAACCTGACGCAGTCACTTTCACTGGGGCGCTTACCGCGTGTAGCCATGTAGGTCTAGTTGAAGAAGGTCTTCGATATTTTCAAATTATGAAATGTGATTACAGAATCTCGCCTCGAATTGAGCATTATGGATGCTTAGTGGATTTGTATAGTCGGGCTGGGAGATTGGAAGACGCTTTGAAGTTGGTGCAGAGCATGCCAATGAAGCCAAATGAAGTTGTGATTGGATCGTTGCTTGCAGCTTGCAGCAATCATGGGAACAATATCGTCTTAGCAGAGAGGCTGATGAAGCATCTTACCGACCTGAATGTGAAAAGCCATTCAAATTATGTGATTCTCTCGAATATGTATGCTGCTGATGGAAAATGGGAAGGAGCAAGTAAGATGAGAAGGAAGATGAAGGGTCTCGGTCTAAAAAAGCAGCCTGGGTTTAGTTCGATAGAGATTGATGATTGCATGCATGTGTTCATGGCCGGTGACAATGCCCATGTTGAGACCACTTATATCCGCGAGGTCCTGGAGCTTATTTCTTCTGATTTGCGATTACAGGGCTGTGTAGTTGAAACCCTTGCTGGTGATCTCCTCAATGCTTGA
Protein Sequence
- >AT1G05750.2
MGLLPVVGITSPALITHKNHANPKIQRHNQSTSETTVSWTSRINLLTRNGRLAEAAKEFSDMTLAGVEPNHITFIALLSGCGDFTSGSEALGDLLHGYACKLGLDRNHVMVGTAIIGMYSKRGRFKKARLVFDYMEDKNSVTWNTMIDGYMRSGQVDNAAKMFDKMPERDLISWTAMINGFVKKGYQEEALLWFREMQISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVLSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFYNMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEKGFKPDAVTFTGALTACSHVGLVEEGLRYFQIMKCDYRISPRIEHYGCLVDLYSRAGRLEDALKLVQSMPMKPNEVVIGSLLAACSNHGNNIVLAERLMKHLTDLNVKSHSNYVILSNMYAADGKWEGASKMRRKMKGLGLKKQPGFSSIEIDDCMHVFMAGDNAHVETTYIREVLELISSDLRLQGCVVETLAGDLLNA - >AT1G05750.1
MGLLPVVGITSPALITHKNHANPKIQRHNQSTSETTVSWTSRINLLTRNGRLAEAAKEFSDMTLAGVEPNHITFIALLSGCGDFTSGSEALGDLLHGYACKLGLDRNHVMVGTAIIGMYSKRGRFKKARLVFDYMEDKNSVTWNTMIDGYMRSGQVDNAAKMFDKMPERDLISWTAMINGFVKKGYQEEALLWFREMQISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVLSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFYNMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEKGFKPDAVTFTGALTACSHVGLVEEGLRYFQIMKCDYRISPRIEHYGCLVDLYSRAGRLEDALKLVQSMPMKPNEVVIGSLLAACSNHGNNIVLAERLMKHLTDLNVKSHSNYVILSNMYAADGKWEGASKMRRKMKGLGLKKQPGFSSIEIDDCMHVFMAGDNAHVETTYIREVLELISSDLRLQGCVVETLAGDLLNA