Information report for AT1G05500
Gene Details
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Functional Descriptions
- PO:0000013 — cauline leaf — hoja caulinar (Spanish, exact), 茎生葉、茎葉 (Japanese, exact)
- PO:0000230 — inflorescence meristem — meristema de la inflorescencia (Spanish, exact), 花序分裂組織 (Japanese, exact)
- PO:0009010 — seed — semilla (Spanish, exact), 種子 (Japanese, exact), pyrene (narrow), diaspore (broad)
- PO:0009030 — carpel — carpelo (Spanish, exact), 心皮 (Japanese, exact), Poaceae carpel (narrow), Zea carpel (narrow), pistil (broad)
- PO:0009032 — petal — pétalo (Spanish, exact), 花弁 (Japanese, exact)
- PO:0009047 — stem — caña (Spanish, exact), culm (exact), eje primario (Spanish, exact), primary axis (exact), primary stem (exact), tallo (Spanish, exact), tronco (Spanish, exact), 茎 (Japanese, exact), bole (narrow), cane (narrow), caudex (narrow), caudices (narrow), core (narrow), primocane (narrow), scape (narrow), stalk (narrow), trunk (narrow)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
- PO:0025195 — pollen tube cell — célula del tubo polínico (Spanish, exact), 花粉管細胞 (Japanese, exact)
- PO:0000293 — guard cell — célula guardiana (Spanish, exact), occlusive cell (exact), 孔辺細胞 (Japanese, exact)
Functional Keywords
- cauline leaf , inflorescence meristem , seed , carpel , petal , stem , pollen , pollen tube cell , guard cell
Literature and News
- A quartet of PIF bHLH factors provides a transcriptionally centered signaling hub that regulates seedling morphogenesis through differential expression-patterning of shared target genes in Arabidopsis. DOI: 10.1371/journal.pgen.1003244 ; PMID: 23382695
- PHYTOCHROME INTERACTING FACTOR3 associates with the histone deacetylase HDA15 in repression of chlorophyll biosynthesis and photosynthesis in etiolated Arabidopsis seedlings. DOI: 10.1105/tpc.113.109710 ; PMID: 23548744
- Interaction with plant transcription factors can mediate nuclear import of phytochrome B. DOI: 10.1073/pnas.1120764109 ; PMID: 22451940
- Phytochrome B inhibits binding of phytochrome-interacting factors to their target promoters. DOI: 10.1111/j.1365-313X.2012.05114.x ; PMID: 22849408
- Ca²⁺ is involved in phytochrome A-dependent regulation of the succinate dehydrogenase gene sdh1-2 in Arabidopsis. DOI: 10.1016/j.jplph.2013.04.006 ; PMID: 23711731
- Antagonistic basic helix-loop-helix/bZIP transcription factors form transcriptional modules that integrate light and reactive oxygen species signaling in Arabidopsis. DOI: 10.1105/tpc.112.104869 ; PMID: 23645630
- PIF3 is involved in the primary root growth inhibition of Arabidopsis induced by nitric oxide in the light. DOI: 10.1093/mp/sst142 ; PMID: 24157606
- Multisite light-induced phosphorylation of the transcription factor PIF3 is necessary for both its rapid degradation and concomitant negative feedback modulation of photoreceptor phyB levels in Arabidopsis. DOI: 10.1105/tpc.113.112342 ; PMID: 23903316
- PIF1 promotes phytochrome-regulated growth under photoperiodic conditions in Arabidopsis together with PIF3, PIF4, and PIF5. DOI: 10.1093/jxb/ert465 ; PMID: 24420574
- Ethylene-orchestrated circuitry coordinates a seedling's response to soil cover and etiolated growth. DOI: 10.1073/pnas.1402491111 ; PMID: 24599595
Gene Resources
- UniProt: A0A1P8APH4
- EMBL: CP002684
- AlphaFoldDB: A0A1P8APH4
- EnsemblPlants: AT1G05500.2
- Gramene: AT1G05500.2
- Orthologous matrix: HIKATWM
- ExpressionAtlas: AT1G05500
- InterPro: IPR000008, IPR031468, IPR035892
- PANTHER: PTHR10774, PTHR10774:SF149
- SUPFAM: SSF49562
- PROSITE: PS50004, PS51847
- Gene3D: 2.60.40.150
- SWISS-MODEL: A0A1P8APH4
- Conserved Domain Database: cd00030, cd21677
Homologs
- Actinidia chinensis CEY00_Acc00828, CEY00_Acc21010
- Brassica oleracea Bo3g004070
- Citrullus lanatus Cla97C09G181130
- Oryza sativa OsSYT-5, Rpp17;OsERG1, Rpp16;OsPBP1, OsAGAP
- Saccharum spontaneum Sspon.08G0005820-3D, Sspon.08G0005820-1A
- Solanum lycopersicum Solyc12g009740.2
- Solanum tuberosum Soltu.DM.12G027080
- Triticum aestivum Traes_2AL_355107900
Sequences
cDNA Sequence
- >AT1G05500.2
ATTCTTGTTGTTGCTTTGGCTTTTTATTTACTTCAGTTGACTTGGCTCAACCATCACTTGACAAAGATCTGGCCTTATGTTGATGAGGCAGCCTCTGAGCTTATAAAGGCATCCGTGGAGCCTGTTCTTGAGCAATATAGACCTGCCATTGTGGCCTCCTTAACATTTTCTAAGCTTACTCTCGGTACAGTGGCACCTCAATTTACAGGTGTTTCCGTTATCGACGGTGATAAAAATGGGATTACCTTGGAACTTGATATGCAATGGGATGGAAACCCAAATATAGTACTTGGCGTCAAGACCTTAGTTGGTGTATCCCTCCCCATTCAGGTGAAAAACATCGGATTCACTGGTGTTTTCAGGCTAATTTTTAGGCCACTAGTTGAGGACTTTCCCTGCTTTGGAGCTGTCAGCGTTTCTCTTAGAGAAAAGAAAAAATTGGACTTCACCCTTAAGGTTGTTGGAGGTGATATTTCAGCAATTCCTGGACTTTCTGAAGCTATTGAGGAAACAATTCGGGATGCCGTGGAAGATTCTATCACATGGCCTGTTCGGAAGGTCATCCCAATTATACCTGGTGATTATAGCGATCTGGAGCTAAAGCCTGTTGGAATGTTAGAGGTGAAGCTTGTGCAAGCAAAGAACTTGACCAACAAAGATCTAGTTGGAAAATCAGACCCCTTTGCTAAAATGTTTATACGCCCTTTGCGTGAAAAGACTAAAAGAAGCAAGACAATTAACAATGACCTGAATCCCATCTGGAATGAGCATTTTGAATTTGTTGTGGAAGACGCGTCAACTCAACATTTAGTGGTCAGAATATATGATGACGAGGGTGTACAAGCATCTGAGCTTATTGGTTGTGCCCAAATCCGGCTTTGTGAACTTGAACCTGGTAAAGTGAAAGACGTCTGGTTGAAGCTGGTCAAAGATTTGGAGATCCAGAGAGATACTAAGAACCGTGGAGAGGTTCACCTTGAGCTCCTTTACATCCCTTATGGTTCGGGAAACGGCATTGTAAATCCCTTTGTCACTTCATCGATGACGTCCTTAGAGAGGGTGCTCAAGAATGATACAACAGATGAAGAAAATGCATCAAGCCGTAAAAGAAAAGATGTCATTGTAAGAGGAGTTCTCTCTGTGACAGTGATATCTGCAGAAGAGATACCAATACAAGATCTGATGGGGAAAGCTGATCCATATGTTGTTCTCTCGATGAAGAAATCAGGTGCCAAGAGCAAAACTCGGGTCGTCAATGACAGCTTGAACCCGGTATGGAACCAGACTTTTGATTTTGTAGTTGAAGACGGGTTACATGATATGCTAGTCCTTGAAGTCTGGGACCACGACACCTTTGGAAAGGACTACATTGGGAGATGTATCCTCACGTTGACAAGGGTTATAATGGAAGAGGAGTACAAAGACTGGTACCCATTAGACGAATCCAAAACGGGCAAGCTTCAGCTGCATCTGAAGTGGATGGCTCAATCAATTTATCGTGATTCCTAAGCTTAATCGGTAGAATCAATTTATCGTGATTCCTAAGCTTAATCGGAAGATTCACAACTTCGAATGTACATGTTGTCTAGTAGCGTCAAACGGATGTGTTTTGTCAAACAAAGACGAGTCTGCATGTAGCCCAGAAGCTGTGGACTCGGAATATGAGTTTTCCTCTTTTTTTCTGAAAACCCTAGACAATACTCGTGTACGTTTGCCTCATAAGCTCAGATGTCATAAGGGGTTTGATCTTTGCGTGCATCACAATCCTTCAATAATTTTTTACCTTTTACCCT - >AT1G05500.1
ATTCTTGTTGTTGCTTTGGCTTTTTATTTACTTCAGTTGACTTGGCTCAACCATCACTTGACAAAGATCTGGCCTTATGTTGATGAGGCAGCCTCTGAGCTTATAAAGGCATCCGTGGAGCCTGTTCTTGAGCAATATAGACCTGCCATTGTGGCCTCCTTAACATTTTCTAAGCTTACTCTCGGTACAGTGGCACCTCAATTTACAGGTGTTTCCGTTATCGACGGTGATAAAAATGGGATTACCTTGGAACTTGATATGCAATGGGATGGAAACCCAAATATAGTACTTGGCGTCAAGACCTTAGTTGGTGTATCCCTCCCCATTCAGGTGAAAAACATCGGATTCACTGGTGTTTTCAGGCTAATTTTTAGGCCACTAGTTGAGGACTTTCCCTGCTTTGGAGCTGTCAGCGTTTCTCTTAGAGAAAAGAAAAAATTGGACTTCACCCTTAAGGTTGTTGGAGGTGATATTTCAGCAATTCCTGGACTTTCTGAAGCTATTGAGGAAACAATTCGGGATGCCGTGGAAGATTCTATCACATGGCCTGTTCGGAAGGTCATCCCAATTATACCTGGTGATTATAGCGATCTGGAGCTAAAGCCTGTTGGAATGTTAGAGGTGAAGCTTGTGCAAGCAAAGAACTTGACCAACAAAGATCTAGTTGGAAAATCAGACCCCTTTGCTAAAATGTTTATACGCCCTTTGCGTGAAAAGACTAAAAGAAGCAAGACAATTAACAATGACCTGAATCCCATCTGGAATGAGCATTTTGAATTTGTTGTGGAAGACGCGTCAACTCAACATTTAGTGGTCAGAATATATGATGACGAGGGTGTACAAGCATCTGAGCTTATTGGTTGTGCCCAAATCCGGCTTTGTGAACTTGAACCTGGTAAAGTGAAAGACGTCTGGTTGAAGCTGGTCAAAGATTTGGAGATCCAGAGAGATACTAAGAACCGTGGAGAGGTTCACCTTGAGCTCCTTTACATCCCTTATGGTTCGGGAAACGGCATTGTAAATCCCTTTGTCACTTCATCGATGACGTCCTTAGAGAGGGTGCTCAAGAATGATACAACAGATGAAGAAAATGCATCAAGCCGTAAAAGAAAAGATGTCATTGTAAGAGGAGTTCTCTCTGTGACAGTGATATCTGCAGAAGAGATACCAATACAAGATCTGATGGGGAAAGCTGATCCATATGTTGTTCTCTCGATGAAGAAATCAGGTGCCAAGAGCAAAACTCGGGTCGTCAATGACAGCTTGAACCCGGTATGGAACCAGACTTTTGATTTTGTAGTTGAAGACGGGTTACATGATATGCTAGTCCTTGAAGTCTGGGACCACGACACCTTTGGAAAGGACTACATTGGGAGATGTATCCTCACGTTGACAAGGGTTATAATGGAAGAGGAGTACAAAGACTGGTACCCATTAGACGAATCCAAAACGGGCAAGCTTCAGCTGCATCTGAAGTGGATGGCTCAATCAATTTATCGTGATTCCTAAGCTTAATCGGTAGAATCAATTTATCGTGATTCCTAAGCTTAATCGGAAGATTCACAACTTCGAATGTACATGTTGTCTAGTAGCGTCAAACGGATGTGTTTTGTCAAACAAAGACGAGTCTGCATGTAGCCCAGAAGCTGTGGACTCGGAATATGAGTTTTCCTCTTTTTTTCTGAAAACCCTAGACAATACTCGTGTACGTTTGCCTCATAAGCTCAGATGTCATAAGGGGTTTGATCTTTGCGTGCATCACAATCCTTCAATAATTTTTTACCTTTTACCCT
CDS Sequence
- >AT1G05500.2
ATGCAATGGGATGGAAACCCAAATATAGTACTTGGCGTCAAGACCTTAGTTGGTGTATCCCTCCCCATTCAGGTGAAAAACATCGGATTCACTGGTGTTTTCAGGCTAATTTTTAGGCCACTAGTTGAGGACTTTCCCTGCTTTGGAGCTGTCAGCGTTTCTCTTAGAGAAAAGAAAAAATTGGACTTCACCCTTAAGGTTGTTGGAGGTGATATTTCAGCAATTCCTGGACTTTCTGAAGCTATTGAGGAAACAATTCGGGATGCCGTGGAAGATTCTATCACATGGCCTGTTCGGAAGGTCATCCCAATTATACCTGGTGATTATAGCGATCTGGAGCTAAAGCCTGTTGGAATGTTAGAGGTGAAGCTTGTGCAAGCAAAGAACTTGACCAACAAAGATCTAGTTGGAAAATCAGACCCCTTTGCTAAAATGTTTATACGCCCTTTGCGTGAAAAGACTAAAAGAAGCAAGACAATTAACAATGACCTGAATCCCATCTGGAATGAGCATTTTGAATTTGTTGTGGAAGACGCGTCAACTCAACATTTAGTGGTCAGAATATATGATGACGAGGGTGTACAAGCATCTGAGCTTATTGGTTGTGCCCAAATCCGGCTTTGTGAACTTGAACCTGGTAAAGTGAAAGACGTCTGGTTGAAGCTGGTCAAAGATTTGGAGATCCAGAGAGATACTAAGAACCGTGGAGAGGTTCACCTTGAGCTCCTTTACATCCCTTATGGTTCGGGAAACGGCATTGTAAATCCCTTTGTCACTTCATCGATGACGTCCTTAGAGAGGGTGCTCAAGAATGATACAACAGATGAAGAAAATGCATCAAGCCGTAAAAGAAAAGATGTCATTGTAAGAGGAGTTCTCTCTGTGACAGTGATATCTGCAGAAGAGATACCAATACAAGATCTGATGGGGAAAGCTGATCCATATGTTGTTCTCTCGATGAAGAAATCAGGTGCCAAGAGCAAAACTCGGGTCGTCAATGACAGCTTGAACCCGGTATGGAACCAGACTTTTGATTTTGTAGTTGAAGACGGGTTACATGATATGCTAGTCCTTGAAGTCTGGGACCACGACACCTTTGGAAAGGACTACATTGGGAGATGTATCCTCACGTTGACAAGGGTTATAATGGAAGAGGAGTACAAAGACTGGTACCCATTAGACGAATCCAAAACGGGCAAGCTTCAGCTGCATCTGAAGTGGATGGCTCAATCAATTTATCGTGATTCCTAA - >AT1G05500.1
ATGCAATGGGATGGAAACCCAAATATAGTACTTGGCGTCAAGACCTTAGTTGGTGTATCCCTCCCCATTCAGGTGAAAAACATCGGATTCACTGGTGTTTTCAGGCTAATTTTTAGGCCACTAGTTGAGGACTTTCCCTGCTTTGGAGCTGTCAGCGTTTCTCTTAGAGAAAAGAAAAAATTGGACTTCACCCTTAAGGTTGTTGGAGGTGATATTTCAGCAATTCCTGGACTTTCTGAAGCTATTGAGGAAACAATTCGGGATGCCGTGGAAGATTCTATCACATGGCCTGTTCGGAAGGTCATCCCAATTATACCTGGTGATTATAGCGATCTGGAGCTAAAGCCTGTTGGAATGTTAGAGGTGAAGCTTGTGCAAGCAAAGAACTTGACCAACAAAGATCTAGTTGGAAAATCAGACCCCTTTGCTAAAATGTTTATACGCCCTTTGCGTGAAAAGACTAAAAGAAGCAAGACAATTAACAATGACCTGAATCCCATCTGGAATGAGCATTTTGAATTTGTTGTGGAAGACGCGTCAACTCAACATTTAGTGGTCAGAATATATGATGACGAGGGTGTACAAGCATCTGAGCTTATTGGTTGTGCCCAAATCCGGCTTTGTGAACTTGAACCTGGTAAAGTGAAAGACGTCTGGTTGAAGCTGGTCAAAGATTTGGAGATCCAGAGAGATACTAAGAACCGTGGAGAGGTTCACCTTGAGCTCCTTTACATCCCTTATGGTTCGGGAAACGGCATTGTAAATCCCTTTGTCACTTCATCGATGACGTCCTTAGAGAGGGTGCTCAAGAATGATACAACAGATGAAGAAAATGCATCAAGCCGTAAAAGAAAAGATGTCATTGTAAGAGGAGTTCTCTCTGTGACAGTGATATCTGCAGAAGAGATACCAATACAAGATCTGATGGGGAAAGCTGATCCATATGTTGTTCTCTCGATGAAGAAATCAGGTGCCAAGAGCAAAACTCGGGTCGTCAATGACAGCTTGAACCCGGTATGGAACCAGACTTTTGATTTTGTAGTTGAAGACGGGTTACATGATATGCTAGTCCTTGAAGTCTGGGACCACGACACCTTTGGAAAGGACTACATTGGGAGATGTATCCTCACGTTGACAAGGGTTATAATGGAAGAGGAGTACAAAGACTGGTACCCATTAGACGAATCCAAAACGGGCAAGCTTCAGCTGCATCTGAAGTGGATGGCTCAATCAATTTATCGTGATTCCTAA
Protein Sequence
- >AT1G05500.2
MQWDGNPNIVLGVKTLVGVSLPIQVKNIGFTGVFRLIFRPLVEDFPCFGAVSVSLREKKKLDFTLKVVGGDISAIPGLSEAIEETIRDAVEDSITWPVRKVIPIIPGDYSDLELKPVGMLEVKLVQAKNLTNKDLVGKSDPFAKMFIRPLREKTKRSKTINNDLNPIWNEHFEFVVEDASTQHLVVRIYDDEGVQASELIGCAQIRLCELEPGKVKDVWLKLVKDLEIQRDTKNRGEVHLELLYIPYGSGNGIVNPFVTSSMTSLERVLKNDTTDEENASSRKRKDVIVRGVLSVTVISAEEIPIQDLMGKADPYVVLSMKKSGAKSKTRVVNDSLNPVWNQTFDFVVEDGLHDMLVLEVWDHDTFGKDYIGRCILTLTRVIMEEEYKDWYPLDESKTGKLQLHLKWMAQSIYRDS - >AT1G05500.1
MQWDGNPNIVLGVKTLVGVSLPIQVKNIGFTGVFRLIFRPLVEDFPCFGAVSVSLREKKKLDFTLKVVGGDISAIPGLSEAIEETIRDAVEDSITWPVRKVIPIIPGDYSDLELKPVGMLEVKLVQAKNLTNKDLVGKSDPFAKMFIRPLREKTKRSKTINNDLNPIWNEHFEFVVEDASTQHLVVRIYDDEGVQASELIGCAQIRLCELEPGKVKDVWLKLVKDLEIQRDTKNRGEVHLELLYIPYGSGNGIVNPFVTSSMTSLERVLKNDTTDEENASSRKRKDVIVRGVLSVTVISAEEIPIQDLMGKADPYVVLSMKKSGAKSKTRVVNDSLNPVWNQTFDFVVEDGLHDMLVLEVWDHDTFGKDYIGRCILTLTRVIMEEEYKDWYPLDESKTGKLQLHLKWMAQSIYRDS