Information report for AT1G05385
Gene Details
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Functional Descriptions
- PO:0000013 — cauline leaf — hoja caulinar (Spanish, exact), 茎生葉、茎葉 (Japanese, exact)
- PO:0000230 — inflorescence meristem — meristema de la inflorescencia (Spanish, exact), 花序分裂組織 (Japanese, exact)
- PO:0009010 — seed — semilla (Spanish, exact), 種子 (Japanese, exact), pyrene (narrow), diaspore (broad)
- PO:0009030 — carpel — carpelo (Spanish, exact), 心皮 (Japanese, exact), Poaceae carpel (narrow), Zea carpel (narrow), pistil (broad)
- PO:0009032 — petal — pétalo (Spanish, exact), 花弁 (Japanese, exact)
- PO:0009047 — stem — caña (Spanish, exact), culm (exact), eje primario (Spanish, exact), primary axis (exact), primary stem (exact), tallo (Spanish, exact), tronco (Spanish, exact), 茎 (Japanese, exact), bole (narrow), cane (narrow), caudex (narrow), caudices (narrow), core (narrow), primocane (narrow), scape (narrow), stalk (narrow), trunk (narrow)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
- PO:0000084 — plant sperm cell — célula espermática o esperma (Spanish, exact), male gamete (exact), microgamete (exact), 植物精子細胞 (Japanese, exact), sperm nucleus (related), sperm cell (broad)
- PO:0025195 — pollen tube cell — célula del tubo polínico (Spanish, exact), 花粉管細胞 (Japanese, exact)
- PO:0000293 — guard cell — célula guardiana (Spanish, exact), occlusive cell (exact), 孔辺細胞 (Japanese, exact)
Functional Keywords
- cauline leaf , inflorescence meristem , seed , carpel , petal , stem , pollen , plant sperm cell , pollen tube cell , guard cell
Literature and News
- The RNA-binding proteins CSP41a and CSP41b may regulate transcription and translation of chloroplast-encoded RNAs in Arabidopsis. DOI: 10.1007/s11103-008-9436-z ; PMID: 19067181
- Identification of a novel heteroglycan-interacting protein, HIP 1.3, from Arabidopsis thaliana. DOI: 10.1016/j.jplph.2010.09.008 ; PMID: 21087810
- Arabidopsis CSP41 proteins form multimeric complexes that bind and stabilize distinct plastid transcripts. DOI: 10.1093/jxb/err347 ; PMID: 22090436
- ribonucleases are key players in the control of plastid gene expression. DOI: 10.1093/jxb/err401 ; PMID: 22140236
- Plastid encoded RNA polymerase activity and expression of photosynthesis genes required for embryo and seed development in Arabidopsis. DOI: 10.3389/fpls.2014.00385 ; PMID: 25161659
- A Role for Arabidopsis miR399f in Salt, Drought, and ABA Signaling. DOI: 10.14348/molcells.2016.2188 ; PMID: 26674968
- The arabidopsis cyclic nucleotide interactome. DOI: 10.1186/s12964-016-0133-2 ; PMID: 27170143
- Characterization of the psbH precursor RNAs reveals a precise endoribonuclease cleavage site in the psbT/psbH intergenic region that is dependent on psbN gene expression. DOI: 10.1007/s11103-015-0325-y ; PMID: 26012647
- The Arabidopsis mTERF-repeat MDA1 protein plays a dual function in transcription and stabilization of specific chloroplast transcripts within the psbE and ndhH operons. DOI: 10.1111/nph.16625 ; PMID: 32343843
Gene Resources
- UniProt: A0A178WJM6
- EMBL: CACRSJ010000104, CACSHJ010000087, LUHQ01000001
- AlphaFoldDB: A0A178WJM6
- EnsemblPlants: AT1G05385.1
- Gramene: AT1G05385.1
- KEGG: ath:AT1G05385
- ExpressionAtlas: AT1G05385
- InterPro: IPR025585, IPR038450
- PANTHER: PTHR34041, PTHR34041:SF3
- Gene3D: 1.20.58.810
- OrthoDB: A0A178WJM6
- SWISS-MODEL: A0A178WJM6
Sequences
cDNA Sequence
- >AT1G05385.1
ATTATCATCAACTTGAAGGGCAAATTCGCCATTTTCGCAAACAACTAGAACCATCCTCTTTTTCATCTATATCTGATTCTGAGGTTCCTGTTGTTATCAGACAGAAAGATTCATGGGTTTCCTTGTAGCCGTCATGAACTTTTCTCCTACTTTGGTGCATCACCATATGAAATCGAAGCCACAATGTCAAAATGAAAAGCTTCGTCAAGGCCAAACATCATCTTTGTTTGATCGTCGTGGTTTCTTGAAATGTGTTGTTGGTGCTTCTTCGTTCATGGCCACAATTGAGTTTTCTGGATTACAAGCTCAGGCGTCAGAGGAAAAGTTAGACGAAGGAGAAGGAGTTGTTGGTGCTTTCAAGACTTTGTTTGATCCTAATGAGAGAACAAAGTCTGGCAAAGAGTTACCAAAAGCTTACTTGAAATCTGCAAGAGAGGTTGTCAAAACCATGAGGGAGTCATTGAAAGAGAACCCTAAAGACAATGCTAAGTTCAGAAGAAGTGCTGATGCTGCTAAAGAATCCATTCGTGATTATCTGAGCAATTGGAGAGGACAAAAGACTGTTGCCGGAGAAGAATCATACGTGGAGCTGGAGAATGTAATCCGCGCTTTGGCGAAATTTTACTCAAAGGCAGGTCCTTCTGCACCACTTCCTGATGAGGTTAAGACTGAGATTTTGGATGATCTTAACAAGGCTGAAGAGTTTTTGTGACATTTTTGCTGTAACATGTTTCACCCATGTTATACATATCAAAGTATTGAAAGCAATAGAAGAACGCTTGACCACA - >AT1G05385.2
ATTATCATCAACTTGAAGGGCAAATTCGCCATTTTCGCAAACAACTAGAACCATCCTCTTTTTCATCTATATCTGATTCTGAGGTTCCTGTTGTTATCAGACAGAAAGATTCATGGGTTTCCTTGTAGCCGTCATGAACTTTTCTCCTACTTTGGTGCATCACCATATGAAATCGAAGCCACAATGTCAAAATGAAAAGCTTCGTCAAGGCCAAACATCATCTTTGTTTGATCGTCGTGGTTTCTTGAAATGTGTTGTTGGTGCTTCTTCGTTCATGGCCACAATTGAGTTTTCTGGATTACAAGCTCAGGCGTCAGAGGAAAAGTTAGACGAAGGAGAAGGAGTTGTTGGTGCTTTCAAGACTTTGTTTGATCCTAATGAGAGAACAAAGTCTGGCAAAGAGTTACCAAAAGCTTACTTGAAATCTGCAAGAGAGGTTGTCAAAACCATGAGGGAGTCATTGAAAGAGAACCCTAAAGACAATGCTAAGTTCAGAAGAAGTGCTGATGCTGCTAAAGAATCCATTCGTGATTATCTGAGCAATTGGAGAGGACAAAAGACTGTTGCCGGAGAAGAATCATACGTGGAGCTGGAGAATGTAATCCGCGCTTTGGCGAAATTTTACTCAAAGGCAGGTCCTTCTGCACCACTTCCTGATGAGGTTAAGACTGAGATTTTGGATGATCTTAACAAGGCTGAAGAGTTTTTGTGACATTTTTGCTGTAACATGTTTCACCCATGTTATACATATCAAAGTATTGAAAGCAATAGAAGAACGCTTGACCACA
CDS Sequence
- >AT1G05385.1
ATGGGTTTCCTTGTAGCCGTCATGAACTTTTCTCCTACTTTGGTGCATCACCATATGAAATCGAAGCCACAATGTCAAAATGAAAAGCTTCGTCAAGGCCAAACATCATCTTTGTTTGATCGTCGTGGTTTCTTGAAATGTGTTGTTGGTGCTTCTTCGTTCATGGCCACAATTGAGTTTTCTGGATTACAAGCTCAGGCGTCAGAGGAAAAGTTAGACGAAGGAGAAGGAGTTGTTGGTGCTTTCAAGACTTTGTTTGATCCTAATGAGAGAACAAAGTCTGGCAAAGAGTTACCAAAAGCTTACTTGAAATCTGCAAGAGAGGTTGTCAAAACCATGAGGGAGTCATTGAAAGAGAACCCTAAAGACAATGCTAAGTTCAGAAGAAGTGCTGATGCTGCTAAAGAATCCATTCGTGATTATCTGAGCAATTGGAGAGGACAAAAGACTGTTGCCGGAGAAGAATCATACGTGGAGCTGGAGAATGTAATCCGCGCTTTGGCGAAATTTTACTCAAAGGCAGGTCCTTCTGCACCACTTCCTGATGAGGTTAAGACTGAGATTTTGGATGATCTTAACAAGGCTGAAGAGTTTTTGTGA - >AT1G05385.2
ATGGGTTTCCTTGTAGCCGTCATGAACTTTTCTCCTACTTTGGTGCATCACCATATGAAATCGAAGCCACAATGTCAAAATGAAAAGCTTCGTCAAGGCCAAACATCATCTTTGTTTGATCGTCGTGGTTTCTTGAAATGTGTTGTTGGTGCTTCTTCGTTCATGGCCACAATTGAGTTTTCTGGATTACAAGCTCAGGCGTCAGAGGAAAAGTTAGACGAAGGAGAAGGAGTTGTTGGTGCTTTCAAGACTTTGTTTGATCCTAATGAGAGAACAAAGTCTGGCAAAGAGTTACCAAAAGCTTACTTGAAATCTGCAAGAGAGGTTGTCAAAACCATGAGGGAGTCATTGAAAGAGAACCCTAAAGACAATGCTAAGTTCAGAAGAAGTGCTGATGCTGCTAAAGAATCCATTCGTGATTATCTGAGCAATTGGAGAGGACAAAAGACTGTTGCCGGAGAAGAATCATACGTGGAGCTGGAGAATGTAATCCGCGCTTTGGCGAAATTTTACTCAAAGGCAGGTCCTTCTGCACCACTTCCTGATGAGGTTAAGACTGAGATTTTGGATGATCTTAACAAGGCTGAAGAGTTTTTGTGA
Protein Sequence
- >AT1G05385.1
MGFLVAVMNFSPTLVHHHMKSKPQCQNEKLRQGQTSSLFDRRGFLKCVVGASSFMATIEFSGLQAQASEEKLDEGEGVVGAFKTLFDPNERTKSGKELPKAYLKSAREVVKTMRESLKENPKDNAKFRRSADAAKESIRDYLSNWRGQKTVAGEESYVELENVIRALAKFYSKAGPSAPLPDEVKTEILDDLNKAEEFL - >AT1G05385.2
MGFLVAVMNFSPTLVHHHMKSKPQCQNEKLRQGQTSSLFDRRGFLKCVVGASSFMATIEFSGLQAQASEEKLDEGEGVVGAFKTLFDPNERTKSGKELPKAYLKSAREVVKTMRESLKENPKDNAKFRRSADAAKESIRDYLSNWRGQKTVAGEESYVELENVIRALAKFYSKAGPSAPLPDEVKTEILDDLNKAEEFL