Information report for AT1G05055
Gene Details
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Functional Descriptions
- PO:0000013 — cauline leaf — hoja caulinar (Spanish, exact), 茎生葉、茎葉 (Japanese, exact)
- PO:0000230 — inflorescence meristem — meristema de la inflorescencia (Spanish, exact), 花序分裂組織 (Japanese, exact)
- PO:0009010 — seed — semilla (Spanish, exact), 種子 (Japanese, exact), pyrene (narrow), diaspore (broad)
- PO:0009030 — carpel — carpelo (Spanish, exact), 心皮 (Japanese, exact), Poaceae carpel (narrow), Zea carpel (narrow), pistil (broad)
- PO:0009032 — petal — pétalo (Spanish, exact), 花弁 (Japanese, exact)
- PO:0009047 — stem — caña (Spanish, exact), culm (exact), eje primario (Spanish, exact), primary axis (exact), primary stem (exact), tallo (Spanish, exact), tronco (Spanish, exact), 茎 (Japanese, exact), bole (narrow), cane (narrow), caudex (narrow), caudices (narrow), core (narrow), primocane (narrow), scape (narrow), stalk (narrow), trunk (narrow)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
- PO:0000293 — guard cell — célula guardiana (Spanish, exact), occlusive cell (exact), 孔辺細胞 (Japanese, exact)
- GO:0005675 — part of — transcription factor TFIIH holo complex
- GO:0006357 — involved in — regulation of transcription by RNA polymerase II
- GO:0006351 — involved in — DNA-templated transcription
- GO:0005634 — located in — nucleus
- GO:0006357 — acts upstream of or within — regulation of transcription by RNA polymerase II
- GO:0006289 — acts upstream of or within — nucleotide-excision repair
- GO:0008270 — enables — zinc ion binding
- GO:0006289 — involved in — nucleotide-excision repair
- GO:0000439 — part of — transcription factor TFIIH core complex
Functional Keywords
- cauline leaf , inflorescence meristem , seed , carpel , petal , stem , pollen , guard cell
Literature and News
- PXL1 and SERKs act as receptor-coreceptor complexes for the CLE19 peptide to regulate pollen development. DOI: 10.1038/s41467-023-39074-4 ; PMID: 37286549
- Glutathione imparts stress tolerance against Alternaria brassicicola infection via miRNA mediated gene regulation. DOI: 10.1080/15592324.2022.2047352 ; PMID: 36184871
- A homolog of ScRAD5 is involved in DNA repair and homologous recombination in Arabidopsis. DOI: 10.1104/pp.108.116806 ; PMID: 18310306
- Four amino acids guide the assembly or disassembly of Arabidopsis histone H3.3-containing nucleosomes. DOI: 10.1073/pnas.1017882108 ; PMID: 21670303
Gene Resources
- UniProt: A0A178W5Z7
- EMBL: CACSHJ010000087, LUHQ01000001
- AlphaFoldDB: A0A178W5Z7
- EnsemblPlants: AT1G05055.1
- Gramene: AT1G05055.1
- KEGG: ath:AT1G05055
- Orthologous matrix: INWVEVP
- ExpressionAtlas: AT1G05055
- InterPro: IPR001841, IPR002035, IPR004595
- PANTHER: PTHR12695, PTHR12695:SF2
- SUPFAM: SSF53300, SSF57889
- PROSITE: PS00028, PS50089, PS50234
- Gene3D: 3.30.40.10, 3.40.50.410
- OrthoDB: A0A178W5Z7
- SWISS-MODEL: A0A178W5Z7
- Conserved Domain Database: cd01453
Sequences
cDNA Sequence
- >AT1G05055.1
GTTCTCTTCTTCTTTTTGTAATTAGGTCTCTTAGACGGTGAGGTTAACGATGAGTAATCAAAGAAAGAGATCAAACGATGAAAGAGAAGAAGAGGACGACGAAGATGCGGAAGGTATCGGCGAGTGGGAGAGAGCTTATGTTGACGACCGATCCTGGGAGGAGTTGCAAGAGGATGAGTCTGGACTTTTACGGCCAATTGATAACAGTGCCATTTACCATGCTCAGTATCGCCGCCGTCTTCGTATGCTCTCCGCCGCTGCTGCTGGTACTCGTATCCAAAAGGGACTTATTCGATATCTCTACATCGTCATTGACTTCTCTCGGGCAGCTGCGGAAATGGATTTCAGACCAAGCCGGATGGCTATAATGGCCAAACATGTCGAAGCTTTCATTAGAGAGTTCTTTGACCAGAATCCTCTGAGTCAAATTGGGTTGGTCTCTATAAAAAATGGAGTTGCGCATACATTAACAGATCTTGGTGGTAGTCCTGAGACTCACATCAAAGCGTTGATGGGGAAGTTGGAAGCTTTGGGTGACTCCTCTTTGCAGAACGCTCTGGAACTTGTACATGAGCATCTCAACCAGGTTCCATCTTATGGTCACCGCGAGGTTCTGATATTGTACTCAGCTTTATGCACATGTGATCCAGGCGATATCATGGAGACCATTCAAAAATGCAAGAAATCCAAATTAAGATGTTCTGTAATTGGGCTCTCTGCAGAAATGTTCATATGTAAACACCTCTGCCAGGAAACTGGCGGATTGTATTCAGTTGCAGTGGACGAGGTGCATCTAAAGGATCTTCTGCTTGAACATGCGCCTCCACCTCCGGCAATAGCAGAATTTGCAATTGCAAATTTGATCAAGATGGGTTTCCCACAAAGAGCTGCTGAGGGTTCAATGGCGATTTGTTCGTGTCATAAGGAAGTTAAGATTGGAGCTGGTTACATGTGCCCAAGATGCAAAGCTCGGGTATGTGACCTCCCTACGGAATGCACTATCTGCGGTCTAACACTTGTTTCTTCGCCGCATTTGGCGAGATCATACCATCATCTCTTCCCGATTGCTCCATTTGATGAGGTGCCTGCACTTTCAAGTCTGAATGATAATCGGAGAAAATTGGGAAAGAGTTGTTTTGGTTGCCAACAGAGCCTAATTGGTGCAGGGAATAAACCCGTCCCATGCGTAACATGTCGTAAATGCAAGCACTATTTCTGTCTGGACTGTGACATATACATCCACGAGAGCTTACACAACTGTCCTGGCTGTGAGAGCATTCACCGTCCCAAATCAGTTTCTTTGATGGAAGAATGAGAGAATGAATGTGTTCACACTTCCAATTATAAATCACAATTGAGATGATGAGAGGAAGCAATTTTTTTTGTGATATAGGATGTTGTAATTGGTCTTATGTCCTTAACCAAAATCTTTCTTCTTTTGTGGACTCTATTGCTCTCTCACAATTGATCCAAAACAAACCGACTCAAATTTTCAGAGATAGCATTCTTAATTGTTTGATTTTCTATTTAACTTGGGCTTGAAATTTCTTCACTCATGAGAAAACGAACAGTAGTAATAAAGAATTATTTCGGTGGT
CDS Sequence
- >AT1G05055.1
ATGAGTAATCAAAGAAAGAGATCAAACGATGAAAGAGAAGAAGAGGACGACGAAGATGCGGAAGGTATCGGCGAGTGGGAGAGAGCTTATGTTGACGACCGATCCTGGGAGGAGTTGCAAGAGGATGAGTCTGGACTTTTACGGCCAATTGATAACAGTGCCATTTACCATGCTCAGTATCGCCGCCGTCTTCGTATGCTCTCCGCCGCTGCTGCTGGTACTCGTATCCAAAAGGGACTTATTCGATATCTCTACATCGTCATTGACTTCTCTCGGGCAGCTGCGGAAATGGATTTCAGACCAAGCCGGATGGCTATAATGGCCAAACATGTCGAAGCTTTCATTAGAGAGTTCTTTGACCAGAATCCTCTGAGTCAAATTGGGTTGGTCTCTATAAAAAATGGAGTTGCGCATACATTAACAGATCTTGGTGGTAGTCCTGAGACTCACATCAAAGCGTTGATGGGGAAGTTGGAAGCTTTGGGTGACTCCTCTTTGCAGAACGCTCTGGAACTTGTACATGAGCATCTCAACCAGGTTCCATCTTATGGTCACCGCGAGGTTCTGATATTGTACTCAGCTTTATGCACATGTGATCCAGGCGATATCATGGAGACCATTCAAAAATGCAAGAAATCCAAATTAAGATGTTCTGTAATTGGGCTCTCTGCAGAAATGTTCATATGTAAACACCTCTGCCAGGAAACTGGCGGATTGTATTCAGTTGCAGTGGACGAGGTGCATCTAAAGGATCTTCTGCTTGAACATGCGCCTCCACCTCCGGCAATAGCAGAATTTGCAATTGCAAATTTGATCAAGATGGGTTTCCCACAAAGAGCTGCTGAGGGTTCAATGGCGATTTGTTCGTGTCATAAGGAAGTTAAGATTGGAGCTGGTTACATGTGCCCAAGATGCAAAGCTCGGGTATGTGACCTCCCTACGGAATGCACTATCTGCGGTCTAACACTTGTTTCTTCGCCGCATTTGGCGAGATCATACCATCATCTCTTCCCGATTGCTCCATTTGATGAGGTGCCTGCACTTTCAAGTCTGAATGATAATCGGAGAAAATTGGGAAAGAGTTGTTTTGGTTGCCAACAGAGCCTAATTGGTGCAGGGAATAAACCCGTCCCATGCGTAACATGTCGTAAATGCAAGCACTATTTCTGTCTGGACTGTGACATATACATCCACGAGAGCTTACACAACTGTCCTGGCTGTGAGAGCATTCACCGTCCCAAATCAGTTTCTTTGATGGAAGAATGA
Protein Sequence
- >AT1G05055.1
MSNQRKRSNDEREEEDDEDAEGIGEWERAYVDDRSWEELQEDESGLLRPIDNSAIYHAQYRRRLRMLSAAAAGTRIQKGLIRYLYIVIDFSRAAAEMDFRPSRMAIMAKHVEAFIREFFDQNPLSQIGLVSIKNGVAHTLTDLGGSPETHIKALMGKLEALGDSSLQNALELVHEHLNQVPSYGHREVLILYSALCTCDPGDIMETIQKCKKSKLRCSVIGLSAEMFICKHLCQETGGLYSVAVDEVHLKDLLLEHAPPPPAIAEFAIANLIKMGFPQRAAEGSMAICSCHKEVKIGAGYMCPRCKARVCDLPTECTICGLTLVSSPHLARSYHHLFPIAPFDEVPALSSLNDNRRKLGKSCFGCQQSLIGAGNKPVPCVTCRKCKHYFCLDCDIYIHESLHNCPGCESIHRPKSVSLMEE