Information report for AT1G04880
Gene Details
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Functional Descriptions
- PO:0009010 — seed — semilla (Spanish, exact), 種子 (Japanese, exact), pyrene (narrow), diaspore (broad)
- PO:0009032 — petal — pétalo (Spanish, exact), 花弁 (Japanese, exact)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
- PO:0000084 — plant sperm cell — célula espermática o esperma (Spanish, exact), male gamete (exact), microgamete (exact), 植物精子細胞 (Japanese, exact), sperm nucleus (related), sperm cell (broad)
- PO:0025195 — pollen tube cell — célula del tubo polínico (Spanish, exact), 花粉管細胞 (Japanese, exact)
- PO:0020003 — plant ovule — óvulo vegetal (Spanish, exact), 胚珠 (Japanese, exact), Poaceae ovule (narrow), Zea ovule (narrow)
- GO:0009860 — acts upstream of or within — pollen tube growth
- GO:0000976 — enables — transcription cis-regulatory region binding
- GO:0006355 — acts upstream of or within — regulation of DNA-templated transcription
- GO:0009846 — acts upstream of or within — pollen germination
- GO:0000400 — enables — four-way junction DNA binding
- GO:0019760 — acts upstream of or within — glucosinolate metabolic process
- GO:0090406 — located in — pollen tube
- GO:0008134 — enables — transcription factor binding
- GO:0003700 — enables — DNA-binding transcription factor activity
- GO:0005634 — located in — nucleus
- athmgb15-1 — Reduced fertility, shorter siliques, lower seed set.
Functional Keywords
- seed , petal , pollen , plant sperm cell , pollen tube cell , plant ovule
Literature and News
- In silico identification and comparative genomics of candidate genes involved in biosynthesis and accumulation of seed oil in plants. DOI: 10.1155/2012/914843 ; PMID: 22312320
- Modification of Seed Oil Composition in Arabidopsis by Artificial microRNA-Mediated Gene Silencing. DOI: 10.3389/fpls.2012.00168 ; PMID: 22866055
- Genome-Wide Association Study in Arabidopsis thaliana of Natural Variation in Seed Oil Melting Point: A Widespread Adaptive Trait in Plants. DOI: 10.1093/jhered/esw008 ; PMID: 26865732
- Accumulation of palmitate in Arabidopsis mediated by the acyl-acyl carrier protein thioesterase FATB1. DOI: 10.1104/pp.123.2.637 ; PMID: 10859193
- Deposition and localization of lipid polyester in developing seeds of Brassica napus and Arabidopsis thaliana. DOI: 10.1111/j.1365-313X.2007.03348.x ; PMID: 18179651
- Quality control for plant metabolomics: reporting MSI-compliant studies. DOI: 10.1111/j.1365-313X.2007.03387.x ; PMID: 18269577
- Clonal analysis of the late flowering fca mutant of Arabidopsis thaliana: cell fate and cell autonomy. DOI: 10.1242/dev.122.3.1041 ; PMID: 8631249
- Mg-chelatase of tobacco: identification of a Chl D cDNA sequence encoding a third subunit, analysis of the interaction of the three subunits with the yeast two-hybrid system, and reconstitution of the enzyme activity by co-expression of recombinant CHL D, CHL H and CHL I. DOI: 10.1046/j.1365-313x.1997.12050981.x ; PMID: 9418040
- A DNA-damage-induced cell cycle checkpoint in Arabidopsis. DOI: 10.1093/genetics/164.1.323 ; PMID: 12750343
- Gene expression profiling of the tetrapyrrole metabolic pathway in Arabidopsis with a mini-array system. DOI: 10.1104/pp.104.042408 ; PMID: 15326282
- An Arabidopsis mutant that is resistant to the protoporphyrinogen oxidase inhibitor acifluorfen shows regulatory changes in tetrapyrrole biosynthesis. DOI: 10.1007/s00438-005-1129-6 ; PMID: 15815918
- Light signalling pathways regulating the Mg-chelatase branchpoint of chlorophyll synthesis during de-etiolation in Arabidopsis thaliana. DOI: 10.1039/b802596g ; PMID: 18846290
Gene Resources
- UniProt: A0A178W6Z4
- EMBL: CACSHJ010000087, LUHQ01000001
- AlphaFoldDB: A0A178W6Z4
- EnsemblPlants: AT1G04880.1
- Gramene: AT1G04880.1
- KEGG: ath:AT1G04880
- Orthologous matrix: EQNVDMA
- ExpressionAtlas: AT1G04880
- InterPro: IPR001606, IPR009071, IPR036431
- PANTHER: PTHR46691, PTHR46691:SF3
- SUPFAM: SSF46774, SSF47095
- PROSITE: PS50118, PS51011
- Gene3D: 1.10.150.60, 1.10.30.10
- OrthoDB: A0A178W6Z4
- SWISS-MODEL: A0A178W6Z4
- Conserved Domain Database: cd16872, cd22009
Homologs
- Brassica napus BnaA06G0375900ZS
- Brassica rapa Bra025350
- Glycine max Glyma.01G136100, Glyma.03G031900
- Gossypium hirsutum Gohir.D09G021100, Gohir.A09G021800
- Malus domestica MD13G1138800
- Medicago truncatula Medtr5g080030.1, Medtr1g022345
- Musa acuminata Ma02_g21470
Sequences
cDNA Sequence
- >AT1G04880.1
TTCATACACATACGCATCATTCATCAACGTACGCGTCCCTCCCATTATATTCTCTTATATGCACTCTTTCATCACCATCAAAGAGAAACCAAAGCTTTCATTTTTATGAATATTCAAGGGTGAATAGTTAGCAAAGGAATGGCATCAAGCTCTTGTCTCAAGCAAGGGTCAGTGCCAATGAACAATGTTTGTGTTACCCCTGAAGCAACGTATGAGGCTGTGGTTGCAGACCCTAGGCTTTTCATGACTTCCTTGGAAAGGCTGCACTCTCTCTTGGGTACTAAATTCATGGTTCCGATCATAGGAGGAAGAGATTTGGACTTGCACAAGCTTTTCGTTGAGGTAACCTCACGTGGCGGAATCAATAAGATACTTAATGAAAGGAGATGGAAAGAAGTAACTGCTACATTTGTCTTTCCTCCAACTGCAACAAACGCATCATATGTTCTGCGCAAATACTACTTCTCGCTGCTGAACAATTATGAGCAAATCTATTTCTTCAGATCTAATGGTCAGATTCCTCCAGACTCTATGCAGAGTCCATCTGCTAGACCATGCTTTATTCAGGGAGCCATTAGACCTTCACAAGAACTTCAAGCTCTAACCTTTACCCCACAGCCCAAGATCAATACTGCAGAATTCCTCGGAGGATCACTTGCTGGATCAAATGTGGTTGGAGTGATCGATGGAAAATTCGAAAGTGGTTACCTTGTAACTGTAACAATTGGATCAGAGCAGCTTAAAGGAGTTCTGTATCAGCTTCTTCCTCAGAACACAGTTTCTTATCAAACTCCGCAACAGAGTCATGGTGTCCTCCCGAACACTCTGAACATTTCTGCCAATCCTCAGGGGGTTGCAGGAGGAGTAACAAAACGCCGTAGGAGAAGAAAGAAATCAGAGATCAAAAGACGTGATCCTGATCATCCAAAACCCAACAGAAGTGGTTATAACTTCTTTTTCGCAGAGCAGCACGCGAGACTTAAACCGCTTCATCCTGGTAAGGATAGGGATATCAGCAGGATGATTGGTGAGCTATGGAACAAGCTGAATGAAGACGAAAAATTGATTTACCAAGGGAAGGCAATGGAGGACAAAGAGCGATACAGAACTGAAATGGAAGATTACAGAGAGAAAAAAAAGAATGGACAGCTCATAAGCAACGCTGTTCCGCTGCAACAGAGACTTCCGGAGCAAAACGTAGACATGGCTGAAGCTGACCTTCCAATTGATGAAGTCGAAGAAGATGACGAAGAAGGTGATTCAAGCGGATCCTCAGGCGAAAGCGAGCCACATGATGATCAGAGCATAGAAACTGATCCTGAATTGGAAGAGCCATCTCTGAATCCCTCAGGTCCAAACCTAAACCCTAATCCGACTGAGATAGTGGTGGCTCCTAAGGAGAAAAACGGCGATGTTGTGATGGAAACATCTCCATTGAAGAAAGCCGATGAGCCAACTGTGGCGGTGACTGCTGAGCAGAACTGAAGATTCTTCTCTTGTTTCTTACTCCCCGTTGCCAGTTTCGTGTTCCATAGGTAAATGTTAGAGAGAGGAAAGGGCTTCAGATACCTTGCTTCTGGCCCAAGATTATGTCTTTTTGGTTTTTTTTTTGGTTTTTTTGGATTTTTCTTCGGAAACAAGGCAAGTTTATGGTTATAACATTTTGGCATAAGAGAATTTTTTACTTTCGTTATTAATGGGATATCCTGTAAATTGGTGATTAAAATCTGAAAGGGCCTTATAAACTTGGGCTTGGAAAGCAAATGG
CDS Sequence
- >AT1G04880.1
ATGGCATCAAGCTCTTGTCTCAAGCAAGGGTCAGTGCCAATGAACAATGTTTGTGTTACCCCTGAAGCAACGTATGAGGCTGTGGTTGCAGACCCTAGGCTTTTCATGACTTCCTTGGAAAGGCTGCACTCTCTCTTGGGTACTAAATTCATGGTTCCGATCATAGGAGGAAGAGATTTGGACTTGCACAAGCTTTTCGTTGAGGTAACCTCACGTGGCGGAATCAATAAGATACTTAATGAAAGGAGATGGAAAGAAGTAACTGCTACATTTGTCTTTCCTCCAACTGCAACAAACGCATCATATGTTCTGCGCAAATACTACTTCTCGCTGCTGAACAATTATGAGCAAATCTATTTCTTCAGATCTAATGGTCAGATTCCTCCAGACTCTATGCAGAGTCCATCTGCTAGACCATGCTTTATTCAGGGAGCCATTAGACCTTCACAAGAACTTCAAGCTCTAACCTTTACCCCACAGCCCAAGATCAATACTGCAGAATTCCTCGGAGGATCACTTGCTGGATCAAATGTGGTTGGAGTGATCGATGGAAAATTCGAAAGTGGTTACCTTGTAACTGTAACAATTGGATCAGAGCAGCTTAAAGGAGTTCTGTATCAGCTTCTTCCTCAGAACACAGTTTCTTATCAAACTCCGCAACAGAGTCATGGTGTCCTCCCGAACACTCTGAACATTTCTGCCAATCCTCAGGGGGTTGCAGGAGGAGTAACAAAACGCCGTAGGAGAAGAAAGAAATCAGAGATCAAAAGACGTGATCCTGATCATCCAAAACCCAACAGAAGTGGTTATAACTTCTTTTTCGCAGAGCAGCACGCGAGACTTAAACCGCTTCATCCTGGTAAGGATAGGGATATCAGCAGGATGATTGGTGAGCTATGGAACAAGCTGAATGAAGACGAAAAATTGATTTACCAAGGGAAGGCAATGGAGGACAAAGAGCGATACAGAACTGAAATGGAAGATTACAGAGAGAAAAAAAAGAATGGACAGCTCATAAGCAACGCTGTTCCGCTGCAACAGAGACTTCCGGAGCAAAACGTAGACATGGCTGAAGCTGACCTTCCAATTGATGAAGTCGAAGAAGATGACGAAGAAGGTGATTCAAGCGGATCCTCAGGCGAAAGCGAGCCACATGATGATCAGAGCATAGAAACTGATCCTGAATTGGAAGAGCCATCTCTGAATCCCTCAGGTCCAAACCTAAACCCTAATCCGACTGAGATAGTGGTGGCTCCTAAGGAGAAAAACGGCGATGTTGTGATGGAAACATCTCCATTGAAGAAAGCCGATGAGCCAACTGTGGCGGTGACTGCTGAGCAGAACTGA
Protein Sequence
- >AT1G04880.1
MASSSCLKQGSVPMNNVCVTPEATYEAVVADPRLFMTSLERLHSLLGTKFMVPIIGGRDLDLHKLFVEVTSRGGINKILNERRWKEVTATFVFPPTATNASYVLRKYYFSLLNNYEQIYFFRSNGQIPPDSMQSPSARPCFIQGAIRPSQELQALTFTPQPKINTAEFLGGSLAGSNVVGVIDGKFESGYLVTVTIGSEQLKGVLYQLLPQNTVSYQTPQQSHGVLPNTLNISANPQGVAGGVTKRRRRRKKSEIKRRDPDHPKPNRSGYNFFFAEQHARLKPLHPGKDRDISRMIGELWNKLNEDEKLIYQGKAMEDKERYRTEMEDYREKKKNGQLISNAVPLQQRLPEQNVDMAEADLPIDEVEEDDEEGDSSGSSGESEPHDDQSIETDPELEEPSLNPSGPNLNPNPTEIVVAPKEKNGDVVMETSPLKKADEPTVAVTAEQN