Information report for AT1G04860
Gene Details
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Functional Descriptions
- PO:0000013 — cauline leaf — hoja caulinar (Spanish, exact), 茎生葉、茎葉 (Japanese, exact)
- PO:0000230 — inflorescence meristem — meristema de la inflorescencia (Spanish, exact), 花序分裂組織 (Japanese, exact)
- PO:0009010 — seed — semilla (Spanish, exact), 種子 (Japanese, exact), pyrene (narrow), diaspore (broad)
- PO:0009030 — carpel — carpelo (Spanish, exact), 心皮 (Japanese, exact), Poaceae carpel (narrow), Zea carpel (narrow), pistil (broad)
- PO:0009032 — petal — pétalo (Spanish, exact), 花弁 (Japanese, exact)
- PO:0009047 — stem — caña (Spanish, exact), culm (exact), eje primario (Spanish, exact), primary axis (exact), primary stem (exact), tallo (Spanish, exact), tronco (Spanish, exact), 茎 (Japanese, exact), bole (narrow), cane (narrow), caudex (narrow), caudices (narrow), core (narrow), primocane (narrow), scape (narrow), stalk (narrow), trunk (narrow)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
- PO:0000084 — plant sperm cell — célula espermática o esperma (Spanish, exact), male gamete (exact), microgamete (exact), 植物精子細胞 (Japanese, exact), sperm nucleus (related), sperm cell (broad)
- PO:0000293 — guard cell — célula guardiana (Spanish, exact), occlusive cell (exact), 孔辺細胞 (Japanese, exact)
- GO:0004843 — enables — cysteine-type deubiquitinase activity
- GO:0006511 — acts upstream of or within — ubiquitin-dependent protein catabolic process
- GO:0008270 — enables — zinc ion binding
- GO:0005634 — located in — nucleus
- GO:0016579 — involved in — protein deubiquitination
- GO:0000502 — part of — proteasome complex
- GO:0005634 — is active in — nucleus
- GO:0005829 — is active in — cytosol
Functional Keywords
- cauline leaf , inflorescence meristem , seed , carpel , petal , stem , pollen , plant sperm cell , guard cell
Literature and News
- Mitochondrial cytochrome c oxidase and succinate dehydrogenase complexes contain plant specific subunits. DOI: 10.1007/s11103-004-2316-2 ; PMID: 15604729
- Functional and composition differences between mitochondrial complex II in Arabidopsis and rice are correlated with the complex genetic history of the enzyme. DOI: 10.1007/s11103-009-9573-z ; PMID: 19924544
- SDH6 and SDH7 Contribute to Anchoring Succinate Dehydrogenase to the Inner Mitochondrial Membrane in Arabidopsis thaliana. DOI: 10.1104/pp.16.01675 ; PMID: 28039307
- Overexpression of AtCpNifS enhances selenium tolerance and accumulation in Arabidopsis. DOI: 10.1104/pp.105.068684 ; PMID: 16244144
- Chloroplast iron-sulfur cluster protein maturation requires the essential cysteine desulfurase CpNifS. DOI: 10.1073/pnas.0700774104 ; PMID: 17372218
- Structural and functional studies of the mitochondrial cysteine desulfurase from Arabidopsis thaliana. DOI: 10.1093/mp/sss037 ; PMID: 22511606
- X-ray structures of Nfs2, the plastidial cysteine desulfurase from Arabidopsis thaliana. DOI: 10.1107/S2053230X14017026 ; PMID: 25195888
- Characterization of a NifS-like chloroplast protein from Arabidopsis. Implications for its role in sulfur and selenium metabolism. DOI: 10.1104/pp.102.010280 ; PMID: 12427997
- The chloroplast NifS-like protein of Arabidopsis thaliana is required for iron-sulfur cluster formation in ferredoxin. DOI: 10.1007/s00425-004-1388-1 ; PMID: 15480755
- Characterization of Arabidopsis thaliana SufE2 and SufE3: functions in chloroplast iron-sulfur cluster assembly and Nad synthesis. DOI: 10.1074/jbc.M701428200 ; PMID: 17452319
Gene Resources
- UniProt: A0A178WGQ0
- EMBL: LUHQ01000001
- AlphaFoldDB: A0A178WGQ0
- EnsemblPlants: AT1G04860.1
- Gramene: AT1G04860.1
- KEGG: ath:AT1G04860
- Orthologous matrix: MAAGHYV
- ExpressionAtlas: AT1G04860
- InterPro: IPR001394, IPR001607, IPR013083
- PANTHER: PTHR24006, PTHR24006:SF891
- SUPFAM: SSF54001, SSF57850
- PROSITE: PS00972, PS00973, PS50235
- Gene3D: 3.30.40.10, 3.90.70.10
Homologs
- Brassica napus BnaC08G0238600ZS, BnaC05G0144000ZS, BnaA08G0263500ZS, BnaA06G0116800ZS
- Brassica oleracea Bo8g066960, Bo5g023460
- Brassica rapa Bra016618, Bra026003
- Gossypium hirsutum GhUBP15, Gohir.A01G042100, Gohir.D01G030100
- Lactuca sativa gene-LSAT_9X101220
- Oryza sativa OsLMP1;OsUBP2
- Populus trichocarpa POPTR_011G095200v3
- Vitis vinifera VIT_19s0140g00200
Sequences
cDNA Sequence
- >AT1G04860.1
TCGATAGAGTTGTGTTGGGAGAGCCTATGTCACTAACCCCTTTGTCTGCCCCTCTTTCGGAGCGATTCTTTTCTCATTCTTTCGTCGGACTCTCTGTCTCCTTTTGACGGCGGCACCAACGACAAAGCAAGCAAGCAGTGATAACATCTATCTATCTCTCCGTCTAAACCAATTGATTAGGCTAGATCCCAATTCTTCGAGTATCGATTCTTCTTCAATCCTTTTTATGTGAATATTCTCCTAAAGCAGCAACCTCTTGGGTTCTTCTTCTTCTGGTAACTGATGGGGAAGAAAGCGAAGAAGAAGGCCCGAGCTCCAACAAAGGAGATTCAGACCATGGAAATTTCCAAGAAGGTCTCAGAAGAGCCGCCTAGTCAAGCCGGGGAAATTGCTGAGGGTGACGTTAAAGCAGTTAAGGAGACACAAGCTTGTGTGCATTTCGATAAGGCTCTTAATTTGGAGAAGGTGTTGGATAAGATTAAGTCATCCCGGCAGATTAAGTGTGCAGAATGCAATGAAGGAGTGTATGGAAAGAGAGGAACTAAAGCAAAGGGCAGTAAAGGGAAGAAGGATTTTTCTTCTTCTGATCCAAAATCTAATAACAAAGCCATTTGGCTATGTTTGGAATGTGGCTGTTATGTTTGTGGAGGTGTTGGTTTACCAAATGGACCTCAGAGCCATGTTTTGCGACACAGCAGAGTGACACGTCACCGATTGGTGATTCAATGGGAAAATCCTCAGTTAAGATGGTGTTTCCCGTGCCAGTTGCTTCTCCCTGTTGAAAAAGAAGATAATGGCGAGAAGAAAGATGTACTGTCAGAGGTTGTTAAATTGATTAAAGGACGATCTTTGAACAATTTAGCTTCATCCGATATCGAAGATCAGTGCTCAGGAAGTGGCAGTATCACTAGTGATATCAAACTAGAAGGTGCTGTGACCAGTGATATAGAAGCAAGAGATGGTTATGTTGTGCGAGGTTTAGTTAACCTTGGGAACACATGTTTCTTTAATTCGATAATGCAGAATCTTCTTTCTTTGGATCGGTTACGCGATCACTTCTTGAAAGAGAATGGGTCTGGGGTCGGTGGGCCTCTTGCGTCTTCCCTGAGGAAATTATTCACTGAAACGAAACCAGAGGCAGGCTTGAAGAGTGTGATAAATCCTAGAGCCTTTTTTGGGTCTTTCTGTTCTAAGGCACCCCAGTTCCGGGGATATGACCAGCATGATAGCCACGAGTTGCTACGCTGTTTGCTAGATTCGTTGAGCACCGAAGAATCGGCCTTGAGAAAGAAGCGTGGTGTTTCTGATAATGATGAGAAATCTACTACTCTCATAGAATCTGTATTTGGAGGCGAAACGTCGAGCATTGTTAGTTGTATGGAGTGCGGGCATTCCTCAAAAGTCTATGAACCATTTTTGGATCTCTCCTTACCCGTACCATTCAAGAAAAGCCCTCCTAAAAAACCACAACCTGTTTCTCGAGCAAAAAAAGCTAAGCTTCCACCTAAGAGAGTCCCAAAGAATGTGTCAAAAGTAAGTAAGGTTTCAAAAGTTCTCCCAGGTATGGTTCTTTCGGAACTGAACTCTTCCGGAAAATCTATGGCTGTCACAGCTGATTCGGATACATCCTGTTCCAGTTTAGCACCCCTTGATAATGGTCCGGTTTTAGAAACTCCTTCAGTTCTAACCCTTGACAATAATCAGGCCTCAGAAAGTGCATCACAAAGTGATACTGGTTTCGATGGCTCCTGGTTGGATTTTATCGGACCAGAAACCTCTGGAGATGAGACGAATTTGGATATGCAAGAAGATGGTATTGATAATGTCATTACAGCTGAGGTTAATCAAATTGTTCCCAGTCCAAATATTGTGGCGAATAGCTCAGTTTCATCGGGTGATCAGACTTTGGAAGGTAATACAGAGAGGCTGATGCAAGATTATGAAGAAATTGCAAAGGCGGAAGCCAATTTGGATGAAAAAGATGTACAAGCTATGCAGTCTGATGAATGCCCAGCTACAAGTGGTATTTCTGCTGAATTCAGTCAAGCTAGTTGCATTGGTTGTGATCCTGGTATAGGGGAAAGTTCTTCCTCGGTGAATCCTTGGGACGAGGAAGAGCTTCCTTTGGTGGTTGCAGATTCGCAAATTTTGTACATGCCATACAAAGAAATATCCTGTAATGATAAATCAGTTGAAGGTGAGTGTGAAGCTTCATCTTCATTTGTTACTGGTGATCATGAACCACAAAACAGTGATTTTGTTGATTTTGGCGGTTTATTTGATGAGCCTGAGACTACTGAGGGACCTGTTTTTGGACCTCCTTCCAAGGCTGAAGCCTCGGGAGTTGGTTTTATGGCGTTCAGCAGCGAGTCTGATCCTGAAGAAATCGATGATTCGGATTTACCGGTGTCTGTAGAGAGGTGTTTGGGTCATTTCACAAAACATGAGATACTGTCAGATGACAATGCTTGGAACTGCGAGAACTGTTCAAAGAACCTGAAACTCCAACGGTTGAGAGAAAAGCGAAAATCCAATGAAGATGAATCGAGATCAAGCAACACCAGCAACGGATGGGTGAAAGAAAATGAAGATGAAGGTTTTGGAGAAACCGAAATTTTGGCTGTTAAACAAGATCCAAATGATACTAGTTGTGTCAAGGATCATAGCTCTGATGGAAGAAAAGCTGCGAGGATTCACTCAGCTGATGAAAGTGAATCCAAAGGAACTCAAGATGAAGACGAAGATTCTGAGAAGGTGATTACAGTGAAGAGAGATGCAACTAAAAAAGTACTTATAAACAAAGCCCCACCTGTCCTAACCATTCATCTAAAACGATTCAGCCAAGATTTGCGTGGTAGGCTAAGTAAATTAAATGGTCATGTTGCTTTCAAAGAGGTCATCGATCTTCGACAATATATGGACTCAAGGTGTAGCGGAGAAGACCCGCCCGTTTACAGACTGGCTGGATTGGTGGAGCATTCAGGGACGATGAGAGGAGGTCATTATGTGGCGTATGTTAGAGGAGGTCAGCGGGTTAAAGAGACTGATTCCTCCTCCACTGCGTGGTATAACGTAAGCGATGCATATGTTCGTCAGGTTTCATTGGAAAAGGTTCTGCATTCTGAAGCGTATATCTTGTTCTATGAACGGATCTTCTCACAAGAATGAGAAATTATTTTGTTTCCATTACGAAAGGAAAGAAGAAAACCAGTTTTGATCTTCTTCCTTACAATAGCTTTTGCTGGGAAAGTTTTTGACGATCACATTAGATCAAATACCATTAATTTTGTTTTTTCTTATTATATTTTGGAGTCATGAAATTTCATTATATGTATCATCAGAAACATTTCTGAAAGTATTTGAGCCTCTCCAATGAGTTACATTCTTTTATACAGAAAAAGAGTTGGTTCTAGATTCGCAGAATTTGAAGCTTCTTGC
CDS Sequence
- >AT1G04860.1
ATGGGGAAGAAAGCGAAGAAGAAGGCCCGAGCTCCAACAAAGGAGATTCAGACCATGGAAATTTCCAAGAAGGTCTCAGAAGAGCCGCCTAGTCAAGCCGGGGAAATTGCTGAGGGTGACGTTAAAGCAGTTAAGGAGACACAAGCTTGTGTGCATTTCGATAAGGCTCTTAATTTGGAGAAGGTGTTGGATAAGATTAAGTCATCCCGGCAGATTAAGTGTGCAGAATGCAATGAAGGAGTGTATGGAAAGAGAGGAACTAAAGCAAAGGGCAGTAAAGGGAAGAAGGATTTTTCTTCTTCTGATCCAAAATCTAATAACAAAGCCATTTGGCTATGTTTGGAATGTGGCTGTTATGTTTGTGGAGGTGTTGGTTTACCAAATGGACCTCAGAGCCATGTTTTGCGACACAGCAGAGTGACACGTCACCGATTGGTGATTCAATGGGAAAATCCTCAGTTAAGATGGTGTTTCCCGTGCCAGTTGCTTCTCCCTGTTGAAAAAGAAGATAATGGCGAGAAGAAAGATGTACTGTCAGAGGTTGTTAAATTGATTAAAGGACGATCTTTGAACAATTTAGCTTCATCCGATATCGAAGATCAGTGCTCAGGAAGTGGCAGTATCACTAGTGATATCAAACTAGAAGGTGCTGTGACCAGTGATATAGAAGCAAGAGATGGTTATGTTGTGCGAGGTTTAGTTAACCTTGGGAACACATGTTTCTTTAATTCGATAATGCAGAATCTTCTTTCTTTGGATCGGTTACGCGATCACTTCTTGAAAGAGAATGGGTCTGGGGTCGGTGGGCCTCTTGCGTCTTCCCTGAGGAAATTATTCACTGAAACGAAACCAGAGGCAGGCTTGAAGAGTGTGATAAATCCTAGAGCCTTTTTTGGGTCTTTCTGTTCTAAGGCACCCCAGTTCCGGGGATATGACCAGCATGATAGCCACGAGTTGCTACGCTGTTTGCTAGATTCGTTGAGCACCGAAGAATCGGCCTTGAGAAAGAAGCGTGGTGTTTCTGATAATGATGAGAAATCTACTACTCTCATAGAATCTGTATTTGGAGGCGAAACGTCGAGCATTGTTAGTTGTATGGAGTGCGGGCATTCCTCAAAAGTCTATGAACCATTTTTGGATCTCTCCTTACCCGTACCATTCAAGAAAAGCCCTCCTAAAAAACCACAACCTGTTTCTCGAGCAAAAAAAGCTAAGCTTCCACCTAAGAGAGTCCCAAAGAATGTGTCAAAAGTAAGTAAGGTTTCAAAAGTTCTCCCAGGTATGGTTCTTTCGGAACTGAACTCTTCCGGAAAATCTATGGCTGTCACAGCTGATTCGGATACATCCTGTTCCAGTTTAGCACCCCTTGATAATGGTCCGGTTTTAGAAACTCCTTCAGTTCTAACCCTTGACAATAATCAGGCCTCAGAAAGTGCATCACAAAGTGATACTGGTTTCGATGGCTCCTGGTTGGATTTTATCGGACCAGAAACCTCTGGAGATGAGACGAATTTGGATATGCAAGAAGATGGTATTGATAATGTCATTACAGCTGAGGTTAATCAAATTGTTCCCAGTCCAAATATTGTGGCGAATAGCTCAGTTTCATCGGGTGATCAGACTTTGGAAGGTAATACAGAGAGGCTGATGCAAGATTATGAAGAAATTGCAAAGGCGGAAGCCAATTTGGATGAAAAAGATGTACAAGCTATGCAGTCTGATGAATGCCCAGCTACAAGTGGTATTTCTGCTGAATTCAGTCAAGCTAGTTGCATTGGTTGTGATCCTGGTATAGGGGAAAGTTCTTCCTCGGTGAATCCTTGGGACGAGGAAGAGCTTCCTTTGGTGGTTGCAGATTCGCAAATTTTGTACATGCCATACAAAGAAATATCCTGTAATGATAAATCAGTTGAAGGTGAGTGTGAAGCTTCATCTTCATTTGTTACTGGTGATCATGAACCACAAAACAGTGATTTTGTTGATTTTGGCGGTTTATTTGATGAGCCTGAGACTACTGAGGGACCTGTTTTTGGACCTCCTTCCAAGGCTGAAGCCTCGGGAGTTGGTTTTATGGCGTTCAGCAGCGAGTCTGATCCTGAAGAAATCGATGATTCGGATTTACCGGTGTCTGTAGAGAGGTGTTTGGGTCATTTCACAAAACATGAGATACTGTCAGATGACAATGCTTGGAACTGCGAGAACTGTTCAAAGAACCTGAAACTCCAACGGTTGAGAGAAAAGCGAAAATCCAATGAAGATGAATCGAGATCAAGCAACACCAGCAACGGATGGGTGAAAGAAAATGAAGATGAAGGTTTTGGAGAAACCGAAATTTTGGCTGTTAAACAAGATCCAAATGATACTAGTTGTGTCAAGGATCATAGCTCTGATGGAAGAAAAGCTGCGAGGATTCACTCAGCTGATGAAAGTGAATCCAAAGGAACTCAAGATGAAGACGAAGATTCTGAGAAGGTGATTACAGTGAAGAGAGATGCAACTAAAAAAGTACTTATAAACAAAGCCCCACCTGTCCTAACCATTCATCTAAAACGATTCAGCCAAGATTTGCGTGGTAGGCTAAGTAAATTAAATGGTCATGTTGCTTTCAAAGAGGTCATCGATCTTCGACAATATATGGACTCAAGGTGTAGCGGAGAAGACCCGCCCGTTTACAGACTGGCTGGATTGGTGGAGCATTCAGGGACGATGAGAGGAGGTCATTATGTGGCGTATGTTAGAGGAGGTCAGCGGGTTAAAGAGACTGATTCCTCCTCCACTGCGTGGTATAACGTAAGCGATGCATATGTTCGTCAGGTTTCATTGGAAAAGGTTCTGCATTCTGAAGCGTATATCTTGTTCTATGAACGGATCTTCTCACAAGAATGA
Protein Sequence
- >AT1G04860.1
MGKKAKKKARAPTKEIQTMEISKKVSEEPPSQAGEIAEGDVKAVKETQACVHFDKALNLEKVLDKIKSSRQIKCAECNEGVYGKRGTKAKGSKGKKDFSSSDPKSNNKAIWLCLECGCYVCGGVGLPNGPQSHVLRHSRVTRHRLVIQWENPQLRWCFPCQLLLPVEKEDNGEKKDVLSEVVKLIKGRSLNNLASSDIEDQCSGSGSITSDIKLEGAVTSDIEARDGYVVRGLVNLGNTCFFNSIMQNLLSLDRLRDHFLKENGSGVGGPLASSLRKLFTETKPEAGLKSVINPRAFFGSFCSKAPQFRGYDQHDSHELLRCLLDSLSTEESALRKKRGVSDNDEKSTTLIESVFGGETSSIVSCMECGHSSKVYEPFLDLSLPVPFKKSPPKKPQPVSRAKKAKLPPKRVPKNVSKVSKVSKVLPGMVLSELNSSGKSMAVTADSDTSCSSLAPLDNGPVLETPSVLTLDNNQASESASQSDTGFDGSWLDFIGPETSGDETNLDMQEDGIDNVITAEVNQIVPSPNIVANSSVSSGDQTLEGNTERLMQDYEEIAKAEANLDEKDVQAMQSDECPATSGISAEFSQASCIGCDPGIGESSSSVNPWDEEELPLVVADSQILYMPYKEISCNDKSVEGECEASSSFVTGDHEPQNSDFVDFGGLFDEPETTEGPVFGPPSKAEASGVGFMAFSSESDPEEIDDSDLPVSVERCLGHFTKHEILSDDNAWNCENCSKNLKLQRLREKRKSNEDESRSSNTSNGWVKENEDEGFGETEILAVKQDPNDTSCVKDHSSDGRKAARIHSADESESKGTQDEDEDSEKVITVKRDATKKVLINKAPPVLTIHLKRFSQDLRGRLSKLNGHVAFKEVIDLRQYMDSRCSGEDPPVYRLAGLVEHSGTMRGGHYVAYVRGGQRVKETDSSSTAWYNVSDAYVRQVSLEKVLHSEAYILFYERIFSQE