Gene Details:

• Gene ID: AT1G04700
• Gene Symbol: RAF16
• Gene Name:
• Description: PB1 domain-containing protein tyrosine kinase;(source:Araport11)
• TAIR Accession: locus:2197788
• Genome: Araport11_genome_release
• Species: Arabidopsis thaliana

Transcripts:

• AT1G04700.1     AT1G04700.3     AT1G04700.2

Plant Ontology Annotations:

• PO:0000013  — cauline leaf — hoja caulinar (Spanish, exact), 茎生葉、茎葉 (Japanese, exact)
• PO:0000230  — inflorescence meristem — meristema de la inflorescencia (Spanish, exact), 花序分裂組織 (Japanese, exact)
• PO:0009010  — seed — semilla (Spanish, exact), 種子 (Japanese, exact), pyrene (narrow), diaspore (broad)
• PO:0009030  — carpel — carpelo (Spanish, exact), 心皮 (Japanese, exact), Poaceae carpel (narrow), Zea carpel (narrow), pistil (broad)
• PO:0009032  — petal — pétalo (Spanish, exact), 花弁 (Japanese, exact)
• PO:0009047  — stem — caña (Spanish, exact), culm (exact), eje primario (Spanish, exact), primary axis (exact), primary stem (exact), tallo (Spanish, exact), tronco (Spanish, exact), 茎 (Japanese, exact), bole (narrow), cane (narrow), caudex (narrow), caudices (narrow), core (narrow), primocane (narrow), scape (narrow), stalk (narrow), trunk (narrow)
• PO:0025281  — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
• PO:0000084  — plant sperm cell — célula espermática o esperma (Spanish, exact), male gamete (exact), microgamete (exact), 植物精子細胞 (Japanese, exact), sperm nucleus (related), sperm cell (broad)
• PO:0025195  — pollen tube cell — célula del tubo polínico (Spanish, exact), 花粉管細胞 (Japanese, exact)
• PO:0000256  — root hair cell — célula del pelo de la raíz (Spanish, exact), 根毛細胞 (Japanese, exact)
• PO:0000262  — trichoblast — tricoblasto (Spanish, exact), 根毛形成細胞、トリコブラスト (Japanese, exact), hair cell (related)

Gene Ontology:

• GO:0007165  — involved in — signal transduction
• GO:0006468  — involved in — protein phosphorylation
• GO:0004712  — enables — protein serine/threonine/tyrosine kinase activity
• GO:0005737  — located in — cytoplasm
• GO:0005737  — is active in — cytoplasm
• GO:0005634  — located in — nucleus
• GO:0004672  — enables — protein kinase activity

Function-related keywords:

• cauline leaf ,  inflorescence meristem ,  seed ,  carpel ,  petal ,  stem ,  pollen ,  plant sperm cell ,  pollen tube cell ,  root hair cell ,  trichoblast

Literature:

• The AtC-VPS protein complex is localized to the tonoplast and the prevacuolar compartment in arabidopsis.   DOI:  10.1091/mbc.e02-08-0509 ;  PMID:  12589039
• Geminating pollen has tubular vacuoles, displays highly dynamic vacuole biogenesis, and requires VACUOLESS1 for proper function.   DOI:  10.1104/pp.103.037382 ;  PMID:  14988481
• ZIP genes encode proteins involved in membrane trafficking of the TGN-PVC/vacuoles.   DOI:  10.1093/pcp/pcp137 ;  PMID:  19884248
• Transcriptional profiling of the Arabidopsis iron deficiency response reveals conserved transition metal homeostasis networks.   DOI:  10.1104/pp.109.152728 ;  PMID:  20181752
• AtVPS41-mediated endocytic pathway is essential for pollen tube-stigma interaction in Arabidopsis.   DOI:  10.1073/pnas.1602757113 ;  PMID:  27185920
• AtVps11 is essential for vacuole biogenesis in embryo and participates in pollen tube growth in Arabidopsis.   DOI:  10.1016/j.bbrc.2017.07.059 ;  PMID:  28711500
• Distinct sets of tethering complexes, SNARE complexes, and Rab GTPases mediate membrane fusion at the vacuole in Arabidopsis.   DOI:  10.1073/pnas.1717839115 ;  PMID:  29463724
• Phosphoinositides control the localization of HOPS subunit VPS41, which together with VPS33 mediates vacuole fusion in plants.   DOI:  10.1073/pnas.1807763115 ;  PMID:  30104351
• IRT1 and ZIP2 were involved in exogenous hydrogen-rich water-reduced cadmium accumulation in Brassica chinensis and Arabidopsis thaliana.   DOI:  10.1016/j.jhazmat.2020.124599 ;  PMID:  33360184
• Arabidopsis HOPS subunit VPS41 carries out plant-specific roles in vacuolar transport and vegetative growth.   DOI:  10.1093/plphys/kiac167 ;  PMID:  35417008
• The biosynthesis of the branched-chain sugar d-apiose in plants: functional cloning and characterization of a UDP-d-apiose/UDP-d-xylose synthase from Arabidopsis.   DOI:  10.1046/j.1365-313x.2003.01841.x ;  PMID:  12969423
• Arabidopsis MYB26/MALE STERILE35 regulates secondary thickening in the endothecium and is essential for anther dehiscence.   DOI:  10.1105/tpc.106.046391 ;  PMID:  17329564
• UDP-Api/UDP-Xyl synthases affect plant development by controlling the content of UDP-Api to regulate the RG-II-borate complex.   DOI:  10.1111/tpj.14921 ;  PMID:  32662159

Sequences: