Information report for AT1G04270
Gene Details
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Functional Descriptions
- PO:0000013 — cauline leaf — hoja caulinar (Spanish, exact), 茎生葉、茎葉 (Japanese, exact)
- PO:0000230 — inflorescence meristem — meristema de la inflorescencia (Spanish, exact), 花序分裂組織 (Japanese, exact)
- PO:0009010 — seed — semilla (Spanish, exact), 種子 (Japanese, exact), pyrene (narrow), diaspore (broad)
- PO:0009030 — carpel — carpelo (Spanish, exact), 心皮 (Japanese, exact), Poaceae carpel (narrow), Zea carpel (narrow), pistil (broad)
- PO:0009032 — petal — pétalo (Spanish, exact), 花弁 (Japanese, exact)
- PO:0009047 — stem — caña (Spanish, exact), culm (exact), eje primario (Spanish, exact), primary axis (exact), primary stem (exact), tallo (Spanish, exact), tronco (Spanish, exact), 茎 (Japanese, exact), bole (narrow), cane (narrow), caudex (narrow), caudices (narrow), core (narrow), primocane (narrow), scape (narrow), stalk (narrow), trunk (narrow)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
- PO:0000293 — guard cell — célula guardiana (Spanish, exact), occlusive cell (exact), 孔辺細胞 (Japanese, exact)
- GO:0022627 — located in — cytosolic small ribosomal subunit
- GO:0000325 — located in — plant-type vacuole
- GO:0022626 — located in — cytosolic ribosome
- GO:0009507 — located in — chloroplast
- GO:0000028 — involved in — ribosomal small subunit assembly
- GO:0006412 — involved in — translation
- GO:0005737 — located in — cytoplasm
- GO:0022627 — part of — cytosolic small ribosomal subunit
- GO:0003729 — enables — mRNA binding
- GO:0003723 — enables — RNA binding
- GO:0009506 — located in — plasmodesma
- GO:0005576 — located in — extracellular region
- GO:0003735 — enables — structural constituent of ribosome
- GO:0015935 — part of — small ribosomal subunit
Functional Keywords
- cauline leaf , inflorescence meristem , seed , carpel , petal , stem , pollen , guard cell
Literature and News
- A gene family derived from transposable elements during early angiosperm evolution has reproductive fitness benefits in Arabidopsis thaliana. DOI: 10.1371/journal.pgen.1002931 ; PMID: 22969437
- Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. DOI: 10.3389/fpls.2017.02027 ; PMID: 29250089
- Suppression of histone H1 genes in Arabidopsis results in heritable developmental defects and stochastic changes in DNA methylation. DOI: 10.1534/genetics.104.031997 ; PMID: 15489532
- Agrobacterium T-DNA integration into the plant genome can occur without the activity of key non-homologous end-joining proteins. DOI: 10.1111/tpj.12779 ; PMID: 25641249
- Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain. DOI: 10.1104/pp.16.00214 ; PMID: 28298478
- Linker histone H1 modulates defense priming and immunity in plants. DOI: 10.1093/nar/gkad106 ; PMID: 36840717
- Keeping cell identity in Arabidopsis requires PRC1 RING-finger homologs that catalyze H2A monoubiquitination. DOI: 10.1016/j.cub.2010.09.046 ; PMID: 20933424
- Stabilization of Arabidopsis DREB2A is required but not sufficient for the induction of target genes under conditions of stress. DOI: 10.1371/journal.pone.0080457 ; PMID: 24376497
- Deciphering the Role of POLYCOMB REPRESSIVE COMPLEX1 Variants in Regulating the Acquisition of Flowering Competence in Arabidopsis. DOI: 10.1104/pp.15.00073 ; PMID: 25897002
- The Arabidopsis Polycomb Repressive Complex 1 (PRC1) Components AtBMI1A, B, and C Impact Gene Networks throughout All Stages of Plant Development. DOI: 10.1104/pp.16.01259 ; PMID: 27837089
- The E3 Ligase TaSAP5 Alters Drought Stress Responses by Promoting the Degradation of DRIP Proteins. DOI: 10.1104/pp.17.01319 ; PMID: 29089392
- A Canonical DREB2-Type Transcription Factor in Lily Is Post-translationally Regulated and Mediates Heat Stress Response. DOI: 10.3389/fpls.2018.00243 ; PMID: 29568302
- Binding by the Polycomb complex component BMI1 and H2A monoubiquitination shape local and long-range interactions in the Arabidopsis genome. DOI: 10.1093/plcell/koad112 ; PMID: 37070946
- Pectin Synthesis and Pollen Tube Growth in Arabidopsis Involves Three GAUT1 Golgi-Anchoring Proteins: GAUT5, GAUT6, and GAUT7. DOI: 10.3389/fpls.2020.585774 ; PMID: 33072156
- A partial loss-of-function mutation in an Arabidopsis RNA polymerase III subunit leads to pleiotropic defects. DOI: 10.1093/jxb/erw020 ; PMID: 26865731
- Intragenic tRNA-promoted R-loops orchestrate transcription interference for plant oxidative stress responses. DOI: 10.1093/plcell/koab220 ; PMID: 34463741
- Identification of the carotenoid isomerase provides insight into carotenoid biosynthesis, prolamellar body formation, and photomorphogenesis. DOI: 10.1105/tpc.010302 ; PMID: 11884677
- Regulation of carotenoid composition and shoot branching in Arabidopsis by a chromatin modifying histone methyltransferase, SDG8. DOI: 10.1105/tpc.108.063131 ; PMID: 19174535
- Transcriptional control of SET DOMAIN GROUP 8 and CAROTENOID ISOMERASE during Arabidopsis development. DOI: 10.1093/mp/ssp092 ; PMID: 19952001
- Global Regulation of Plant Immunity by Histone Lysine Methyl Transferases. DOI: 10.1105/tpc.16.00012 ; PMID: 27354553
- A foliar pigment-based bioassay for interrogating chloroplast signalling revealed that carotenoid isomerisation regulates chlorophyll abundance. DOI: 10.1186/s13007-022-00847-5 ; PMID: 35177117
- Cloning of tangerine from tomato reveals a carotenoid isomerase essential for the production of beta-carotene and xanthophylls in plants. DOI: 10.1105/tpc.010303 ; PMID: 11884678
- Shoot-to-root mobile polypeptides involved in systemic regulation of nitrogen acquisition. DOI: 10.1038/nplants.2017.29 ; PMID: 28319056
- Leaf Amino Acid Supply Affects Photosynthetic and Plant Nitrogen Use Efficiency under Nitrogen Stress. DOI: 10.1104/pp.18.00597 ; PMID: 30082496
- Shoot-to-root mobile CEPD-like 2 integrates shoot nitrogen status to systemically regulate nitrate uptake in Arabidopsis. DOI: 10.1038/s41467-020-14440-8 ; PMID: 32005881
- The Peptide Hormone Receptor CEPR1 Functions in the Reproductive Tissue to Control Seed Size and Yield. DOI: 10.1104/pp.20.00172 ; PMID: 32317363
Gene Resources
- UniProt: A0A178WE09
- EMBL: CACRSJ010000104, CACSHJ010000087, LR881466
- AlphaFoldDB: A0A178WE09
- EnsemblPlants: AT1G04270.1
- Gramene: AT1G04270.1
- KEGG: ath:AT1G04270
- Orthologous matrix: MQPYSAC
- ExpressionAtlas: AT1G04270
- InterPro: IPR002222, IPR005713, IPR020934
- PANTHER: PTHR11880, PTHR11880:SF53
- SUPFAM: SSF54570
- PROSITE: PS00323
- Gene3D: 3.30.860.10
- OrthoDB: A0A178WE09
- SWISS-MODEL: A0A178WE09
Sequences
cDNA Sequence
- >AT1G04270.1
GTTGGGCCGACAAAAAAAAAAAGGACTAGGGTTCCCAAGTATCCCACTATATATAATTTTAGTCGAAGAAAATTCTTTTATTTTTCTCTTGCAAAGACCTCTCAGCAGCCAACGACAGTTATCAAAGCTTAAGCCGTTTTAGGGTTTTATCCTTTTGCTGAGATCCAATCATGGCGGATGTTGAACCAGAGGTTGCTGCTGCTGGAGTTCCCAAGAAGAGGACGTTTAAGAAGTTTGCCTTCAAAGGAGTTGATCTCGATGCTCTTCTCGATATGTCTACTGATGATCTTGTCAAGCTCTTCTCTTCTCGTATTCGTAGAAGGTTCTCTAGAGGTTTGACAAGGAAGCCAATGGCTCTGATTAAGAAGCTGAGGAAAGCGAAAAGGGAGGCACCACAAGGTGAGAAGCCAGAACCAGTGAGAACCCACTTGAGGAACATGATCATCGTCCCTGAAATGATTGGAAGCATCATTGGAGTGTACAACGGAAAGACTTTCAACCAGGTTGAGATCAAGCCTGAGATGATTGGTCACTACCTGGCTGAGTTCTCTATCTCATACAAGCCGGTCAAGCACGGTAGGCCTGGTGTTGGTGCTACCCACTCTTCCAGATTCATTCCCCTTAAGTGAAAAGCTTCTATTGGGGAATGTGTTTACTTGCTCGTTATATGTGGATCTAAGTACGTGGATCTCTTATGTTTTTGAAGCTTTATAATGACATTACTTTAGAAGCTTTCTCAACTCTAGCTCTTGCGTTTTCATTATCATGTTACAAGAGGATCTTAAATCAAATCATTTTGGATTTTTGTTATGTTTATGTTGTTATAATTTATTTGGATTTGATTAATTGAAAATGAAGTGACACCTAGAACTTGCTCAAACATGGGTATTGTTGTTTTCCTTGTTATTAGGACTCTGCTTAAC - >AT1G04270.2
GTTGGGCCGACAAAAAAAAAAAGGACTAGGGTTCCCAAGTATCCCACTATATATAATTTTAGTCGAAGAAAATTCTTTTATTTTTCTCTTGCAAAGACCTCTCAGCAGCCAACGACAGTTATCAAAGCTTAAGCCGTTTTAGGGTTTTATCCTTTTGCTGAGATCCAATCATGGCGGATGTTGAACCAGAGGTTGCTGCTGCTGGAGTTCCCAAGAAGAGGACGTTTAAGAAGTTTGCCTTCAAAGGAGTTGATCTCGATGCTCTTCTCGATATGTCTACTGATGATCTTGTCAAGCTCTTCTCTTCTCGTATTCGTAGAAGGTTCTCTAGAGGTTTGACAAGGAAGCCAATGGCTCTGATTAAGAAGCTGAGGAAAGCGAAAAGGGAGGCACCACAAGGTGAGAAGCCAGAACCAGTGAGAACCCACTTGAGGAACATGATCATCGTCCCTGAAATGATTGGAAGCATCATTGGAGTGTACAACGGAAAGACTTTCAACCAGGTTGAGATCAAGCCTGAGATGATTGGTCACTACCTGGCTGAGTTCTCTATCTCATACAAGCCGGTCAAGCACGGTAGGCCTGGTGTTGGTGCTACCCACTCTTCCAGATTCATTCCCCTTAAGTGAAAAGCTTCTATTGGGGAATGTGTTTACTTGCTCGTTATATGTGGATCTAAGTACGTGGATCTCTTATGTTTTTGAAGCTTTATAATGACATTACTTTAGAAGCTTTCTCAACTCTAGCTCTTGCGTTTTCATTATCATGTTACAAGAGGATCTTAAATCAAATCATTTTGGATTTTTGTTATGTTTATGTTGTTATAATTTATTTGGATTTGATTAATTGAAAATGAAGTGACACCTAGAACTTGCTCAAACATGGGTATTGTTGTTTTCCTTGTTATTAGGACTCTGCTTAAC
CDS Sequence
- >AT1G04270.1
ATGGCGGATGTTGAACCAGAGGTTGCTGCTGCTGGAGTTCCCAAGAAGAGGACGTTTAAGAAGTTTGCCTTCAAAGGAGTTGATCTCGATGCTCTTCTCGATATGTCTACTGATGATCTTGTCAAGCTCTTCTCTTCTCGTATTCGTAGAAGGTTCTCTAGAGGTTTGACAAGGAAGCCAATGGCTCTGATTAAGAAGCTGAGGAAAGCGAAAAGGGAGGCACCACAAGGTGAGAAGCCAGAACCAGTGAGAACCCACTTGAGGAACATGATCATCGTCCCTGAAATGATTGGAAGCATCATTGGAGTGTACAACGGAAAGACTTTCAACCAGGTTGAGATCAAGCCTGAGATGATTGGTCACTACCTGGCTGAGTTCTCTATCTCATACAAGCCGGTCAAGCACGGTAGGCCTGGTGTTGGTGCTACCCACTCTTCCAGATTCATTCCCCTTAAGTGA - >AT1G04270.2
ATGGCGGATGTTGAACCAGAGGTTGCTGCTGCTGGAGTTCCCAAGAAGAGGACGTTTAAGAAGTTTGCCTTCAAAGGAGTTGATCTCGATGCTCTTCTCGATATGTCTACTGATGATCTTGTCAAGCTCTTCTCTTCTCGTATTCGTAGAAGGTTCTCTAGAGGTTTGACAAGGAAGCCAATGGCTCTGATTAAGAAGCTGAGGAAAGCGAAAAGGGAGGCACCACAAGGTGAGAAGCCAGAACCAGTGAGAACCCACTTGAGGAACATGATCATCGTCCCTGAAATGATTGGAAGCATCATTGGAGTGTACAACGGAAAGACTTTCAACCAGGTTGAGATCAAGCCTGAGATGATTGGTCACTACCTGGCTGAGTTCTCTATCTCATACAAGCCGGTCAAGCACGGTAGGCCTGGTGTTGGTGCTACCCACTCTTCCAGATTCATTCCCCTTAAGTGA
Protein Sequence
- >AT1G04270.1
MADVEPEVAAAGVPKKRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTRKPMALIKKLRKAKREAPQGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGVGATHSSRFIPLK - >AT1G04270.2
MADVEPEVAAAGVPKKRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTRKPMALIKKLRKAKREAPQGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGVGATHSSRFIPLK