Gene Details:

• Gene ID: AT1G04240
• Gene Symbol: IAA3, SHY2
• Gene Name: indole-3-acetic acid inducible 3, SHORT HYPOCOTYL 2
• Description: AUX/IAA transcriptional regulator family protein;(source:Araport11)
• TAIR Accession: locus:2018379
• Genome: Araport11_genome_release
• Species: Arabidopsis thaliana

Transcripts:

• AT1G04240.1     AT1G04240.2

Plant Ontology Annotations:

• PO:0000013  — cauline leaf — hoja caulinar (Spanish, exact), 茎生葉、茎葉 (Japanese, exact)
• PO:0000230  — inflorescence meristem — meristema de la inflorescencia (Spanish, exact), 花序分裂組織 (Japanese, exact)
• PO:0009010  — seed — semilla (Spanish, exact), 種子 (Japanese, exact), pyrene (narrow), diaspore (broad)
• PO:0009030  — carpel — carpelo (Spanish, exact), 心皮 (Japanese, exact), Poaceae carpel (narrow), Zea carpel (narrow), pistil (broad)
• PO:0009032  — petal — pétalo (Spanish, exact), 花弁 (Japanese, exact)
• PO:0009047  — stem — caña (Spanish, exact), culm (exact), eje primario (Spanish, exact), primary axis (exact), primary stem (exact), tallo (Spanish, exact), tronco (Spanish, exact), 茎 (Japanese, exact), bole (narrow), cane (narrow), caudex (narrow), caudices (narrow), core (narrow), primocane (narrow), scape (narrow), stalk (narrow), trunk (narrow)
• PO:0025281  — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
• PO:0025034  — leaf — hoja (Spanish, exact), 葉 (Japanese, exact)
• PO:0000293  — guard cell — célula guardiana (Spanish, exact), occlusive cell (exact), 孔辺細胞 (Japanese, exact)

Gene Ontology:

• GO:0005515  — enables — protein binding
• GO:0006355  — involved in — regulation of DNA-templated transcription
• GO:0009733  — acts upstream of or within — response to auxin
• GO:0005634  — located in — nucleus
• GO:0000976  — enables — transcription cis-regulatory region binding
• GO:0003700  — enables — DNA-binding transcription factor activity
• GO:0042802  — enables — identical protein binding

Germplasm Phenotype:

• 1626  — suppressor of superoot2-1 phenotype
• shy2-2  — Large cotyledons, short hypocotyls, adult plants extremely dwarfed with curled-up leaves, short roots when grown in light

Function-related keywords:

• cauline leaf ,  inflorescence meristem ,  seed ,  carpel ,  petal ,  stem ,  pollen ,  leaf ,  guard cell

Literature:

• Brassinosteroids regulate pavement cell growth by mediating BIN2-induced microtubule stabilization.   DOI:  10.1093/jxb/erx467 ;  PMID:  29329424
• Comparative Analysis of CDPK Family in Maize, Arabidopsis, Rice, and Sorghum Revealed Potential Targets for Drought Tolerance Improvement.   DOI:  10.3389/fchem.2017.00115 ;  PMID:  29312925
• GSK3-like kinase BIN2 phosphorylates RD26 to potentiate drought signaling in Arabidopsis.   DOI:  10.1111/tpj.14484 ;  PMID:  31357236
• The GSK3-like Kinase BIN2 Is a Molecular Switch between the Salt Stress Response and Growth Recovery in Arabidopsis thaliana.   DOI:  10.1016/j.devcel.2020.08.005 ;  PMID:  32891194
• NA   DOI:  NA ;  PMID:  33831152
• Arabidopsis NF-YCs play dual roles in repressing brassinosteroid biosynthesis and signaling during light-regulated hypocotyl elongation.   DOI:  10.1093/plcell/koab112 ;  PMID:  33871651
• GSK3s: nodes of multilayer regulation of plant development and stress responses.   DOI:  10.1016/j.tplants.2021.07.017 ;  PMID:  34417080
• Heat Shock-Induced Accumulation of the Glycogen Synthase Kinase 3-Like Kinase BRASSINOSTEROID INSENSITIVE 2 Promotes Early Flowering but Reduces Thermotolerance in Arabidopsis.   DOI:  10.3389/fpls.2022.838062 ;  PMID:  35154235
• Enhanced growth rate under elevated CO(2) conditions was observed for transgenic lines of genes identified by intraspecific variation analyses in Arabidopsis thaliana.   DOI:  10.1007/s11103-022-01265-w ;  PMID:  35397102
• Analyses of genes encoding the Glycogen Synthase Kinases in rice and Arabidopsis reveal mechanisms which regulate their expression during development and responses to abiotic stresses.   DOI:  10.1016/j.plantsci.2023.111724 ;  PMID:  37142096
• Altered ARA2 (RABA1a) expression in Arabidopsis reveals the involvement of a Rab/YPT family member in auxin-mediated responses.   DOI:  10.1007/s11103-009-9460-7 ;  PMID:  19199049
• Proportional subcellular localization of Arabidopsis thaliana RabA1a.   DOI:  10.1080/15592324.2019.1581561 ;  PMID:  30764708
• An unexpected plethora of trehalose biosynthesis genes in Arabidopsis thaliana.   DOI:  10.1016/s1360-1385(01)02125-2 ;  PMID:  11701378
• Trehalose metabolism in Arabidopsis: occurrence of trehalose and molecular cloning and characterization of trehalose-6-phosphate synthase homologues.   DOI:  10.1093/jexbot/52.362.1817 ;  PMID:  11520870
• Is trehalose-6-phosphate a regulator of sugar metabolism in plants?   DOI:  10.1093/jxb/erg039 ;  PMID:  12508064
• The transcriptional co-activator MBF1c is a key regulator of thermotolerance in Arabidopsis thaliana.   DOI:  10.1074/jbc.M709187200 ;  PMID:  18201973
• Extensive expression regulation and lack of heterologous enzymatic activity of the Class II trehalose metabolism proteins from Arabidopsis thaliana.   DOI:  10.1111/j.1365-3040.2009.01985.x ;  PMID:  19344332
• Coordinated regulation and complex formation of yellow variegated1 and yellow variegated2, chloroplastic FtsH metalloproteases involved in the repair cycle of photosystem II in Arabidopsis thylakoid membranes.   DOI:  10.1105/tpc.017319 ;  PMID:  14630971
• A transcriptomic and proteomic characterization of the Arabidopsis mitochondrial protein import apparatus and its response to mitochondrial dysfunction.   DOI:  10.1104/pp.103.033910 ;  PMID:  14730085
• The Arabidopsis FtsH metalloprotease gene family: interchangeability of subunits in chloroplast oligomeric complexes.   DOI:  10.1111/j.1365-313x.2003.02014.x ;  PMID:  14996218
• Comparative genomics in salt tolerance between Arabidopsis and aRabidopsis-related halophyte salt cress using Arabidopsis microarray.   DOI:  10.1104/pp.104.039909 ;  PMID:  15247402
• Two types of FtsH protease subunits are required for chloroplast biogenesis and Photosystem II repair in Arabidopsis.   DOI:  10.1105/tpc.105.035071 ;  PMID:  16126834
• AtFtsH6 is involved in the degradation of the light-harvesting complex II during high-light acclimation and senescence.   DOI:  10.1073/pnas.0503472102 ;  PMID:  16157880
• Transcriptional profiling implicates novel interactions between abiotic stress and hormonal responses in Thellungiella, a close relative of Arabidopsis.   DOI:  10.1104/pp.105.070508 ;  PMID:  16500996
• Light has a specific role in modulating Arabidopsis gene expression at low temperature.   DOI:  10.1186/1471-2229-8-13 ;  PMID:  18230142
• Activation of the heterotrimeric G protein alpha-subunit GPA1 suppresses the ftsh-mediated inhibition of chloroplast development in Arabidopsis.   DOI:  10.1111/j.1365-313X.2009.03843.x ;  PMID:  19228339
• The FtsH protease heterocomplex in Arabidopsis: dispensability of type-B protease activity for proper chloroplast development.   DOI:  10.1105/tpc.110.079202 ;  PMID:  21062893
• FtsH2 and FtsH5: two homologous subunits use different integration mechanisms leading to the same thylakoid multimeric complex.   DOI:  10.1111/j.1365-313X.2010.04448.x ;  PMID:  21214651
• FtsH proteases located in the plant chloroplast.   DOI:  10.1111/j.1399-3054.2011.01548.x ;  PMID:  22121866
• A Plastid Phosphatidylglycerol Lipase Contributes to the Export of Acyl Groups from Plastids for Seed Oil Biosynthesis.   DOI:  10.1105/tpc.17.00397 ;  PMID:  28687655
• FtsH Protease in the Thylakoid Membrane: Physiological Functions and the Regulation of Protease Activity.   DOI:  10.3389/fpls.2018.00855 ;  PMID:  29973948
• The Photosystem II Repair Cycle Requires FtsH Turnover through the EngA GTPase.   DOI:  10.1104/pp.18.00652 ;  PMID:  30131421
• Recent advances in the study of Clp, FtsH and other proteases located in chloroplasts.   DOI:  10.1016/j.pbi.2006.03.010 ;  PMID:  16603408
• Arabidopsis deadenylases AtCAF1a and AtCAF1b play overlapping and distinct roles in mediating environmental stress responses.   DOI:  10.1104/pp.109.149005 ;  PMID:  19955262
• An alpha-crystallin gene, ACD31.2 from Arabidopsis is negatively regulated by FPF1 overexpression, floral induction, gibberellins, and long days.   DOI:  10.1093/jxb/erh131 ;  PMID:  15073212
• Identification and characterization of a stress-inducible and a constitutive small heat-shock protein targeted to the matrix of plant peroxisomes.   DOI:  10.1104/pp.105.073841 ;  PMID:  16531488
• Molecular cloning of two Arabidopsis UDP-galactose transporters by complementation of a deficient Chinese hamster ovary cell line.   DOI:  10.1093/glycob/cwh159 ;  PMID:  15456736
• Callose synthase GSL7 is necessary for normal phloem transport and inflorescence growth in Arabidopsis.   DOI:  10.1104/pp.110.166330 ;  PMID:  21098675
• CalS7 encodes a callose synthase responsible for callose deposition in the phloem.   DOI:  10.1111/j.1365-313X.2010.04399.x ;  PMID:  21175885
• Callose biosynthesis regulates symplastic trafficking during root development.   DOI:  10.1016/j.devcel.2011.10.006 ;  PMID:  22172675
• Gene co-expression network analysis identifies BEH3 as a stabilizer of secondary vascular development in Arabidopsis.   DOI:  10.1093/plcell/koab151 ;  PMID:  34059919
• Putative pectate lyase PLL12 and callose deposition through polar CALS7 are necessary for long-distance phloem transport in Arabidopsis.   DOI:  10.1016/j.cub.2023.01.038 ;  PMID:  36805125
• The TRIPLE PHD FINGERS proteins are required for SWI/SNF complex-mediated +1 nucleosome positioning and transcription start site determination in Arabidopsis.   DOI:  10.1093/nar/gkac826 ;  PMID:  36189880
• Comprehensive identification of SWI/SNF complex subunits underpins deep eukaryotic ancestry and reveals new plant components.   DOI:  10.1038/s42003-022-03490-x ;  PMID:  35668117
• Arabidopsis 56-amino acid serine palmitoyltransferase-interacting proteins stimulate sphingolipid synthesis, are essential, and affect mycotoxin sensitivity.   DOI:  10.1105/tpc.113.116145 ;  PMID:  24214397
• Impact of AtNHX1, a vacuolar Na+/H+ antiporter, upon gene expression during and long-term salt stress in Arabidopsis thaliana.   DOI:  10.1186/1471-2229-7-18 ;  PMID:  17411438
• Glycerol-3-phosphate acyltransferase 6 (GPAT6) is important for tapetum development in Arabidopsis and plays multiple roles in plant fertility.   DOI:  10.1093/mp/ssr057 ;  PMID:  21746699
• A Novel Complementation Assay for Quick and Specific Screen of Genes Encoding Glycerol-3-Phosphate Acyltransferases.   DOI:  10.3389/fpls.2018.00353 ;  PMID:  29616064
• A GPAT1 Mutation in Arabidopsis Enhances Plant Height but Impairs Seed Oil Biosynthesis.   DOI:  10.3390/ijms22020785 ;  PMID:  33466786
• The Arabidopsis tail-anchored protein PEROXISOMAL AND MITOCHONDRIAL DIVISION FACTOR1 is involved in the morphogenesis and proliferation of peroxisomes and mitochondria.   DOI:  10.1105/tpc.111.090142 ;  PMID:  22147290
• Characterization and subcellular compartmentation of recombinant 4-hydroxyphenylpyruvate dioxygenase from Arabidopsis in transgenic tobacco.   DOI:  10.1104/pp.119.4.1507 ;  PMID:  10198110
• Complementation of the Arabidopsis pds1 mutation with the gene encoding p-hydroxyphenylpyruvate dioxygenase.   DOI:  10.1104/pp.117.4.1317 ;  PMID:  9701587
• Genetic dissection of carotenoid synthesis in arabidopsis defines plastoquinone as an essential component of phytoene desaturation.   DOI:  10.1105/tpc.7.12.2139 ;  PMID:  8718624
• Mesotrione: a new selective herbicide for use in maize.   DOI:  10.1002/1526-4998(200102)57:2<120::AID-PS254>3.0.CO;2-E ;  PMID:  11455642
• Determination of gene copy number and genotype of transgenic Arabidopsis thaliana by competitive PCR.   DOI:  NA ;  PMID:  12021299
• Progress in the dissection and manipulation of vitamin E synthesis.   DOI:  10.1016/j.tplants.2005.10.007 ;  PMID:  16290217

Sequences: