Information report for AT1G04180
Gene Details
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Functional Descriptions
- GO:0010262 — acts upstream of or within — somatic embryogenesis
- GO:0009851 — involved in — auxin biosynthetic process
- GO:0004499 — enables — N,N-dimethylaniline monooxygenase activity
- GO:0050660 — enables — flavin adenine dinucleotide binding
- GO:0009723 — acts upstream of or within — response to ethylene
- GO:0009635 — acts upstream of or within — response to herbicide
- GO:0004497 — enables — monooxygenase activity
- GO:0103075 — enables — indole-3-pyruvate monooxygenase activity
- GO:0050661 — enables — NADP binding
- CS69869 — Disruption of shade avoidance response reflected in failure to increase hypocotyl and petiole length under end-of-the-day far-red light treatment and under low red to far-red conditions. Reduced fertility.
- CS69942 — Reduced hypocotyl and petiole length under end-of-day far-red light treatment (EOD-FR). Slight reduction in hypocotyl length under both high and low red to far-red (R:FR) conditions.
Functional Keywords
Literature and News
- RHON1 is a novel ribonucleic acid-binding protein that supports RNase E function in the Arabidopsis chloroplast. DOI: 10.1093/nar/gks613 ; PMID: 22735703
- RHON1 mediates a Rho-like activity for transcription termination in plastids of Arabidopsis thaliana. DOI: 10.1105/tpc.114.132118 ; PMID: 25480370
- Effects of inefficient transcription termination of rbcL on the expression of accD in plastids of Arabidopsis thaliana. DOI: 10.1007/s11120-015-0159-0 ; PMID: 26003009
- CORRECTION. DOI: 10.1105/tpc.16.00882 ; PMID: 27895221
- RHON1 Co-transcriptionally Resolves R-Loops for Arabidopsis Chloroplast Genome Maintenance. DOI: 10.1016/j.celrep.2019.12.007 ; PMID: 31914390
- Arabidopsis TOL proteins act as gatekeepers for vacuolar sorting of PIN2 plasma membrane protein. DOI: 10.1016/j.cub.2013.10.036 ; PMID: 24316203
- Expression of Arabidopsis TOL genes. DOI: 10.4161/psb.28667 ; PMID: 24699223
- NA DOI: NA ; PMID: 25764436
- An Arabidopsis mutation in translation elongation factor 2 causes superinduction of CBF/DREB1 transcription factor genes but blocks the induction of their downstream targets under low temperatures. DOI: 10.1073/pnas.112040099 ; PMID: 12032361
- CLO/GFA1 and ATO are novel regulators of gametic cell fate in plants. DOI: 10.1111/j.1365-313X.2008.03650.x ; PMID: 18702672
- VAJ/GFA1/CLO is involved in the directional control of floral organ growth. DOI: 10.1093/pcp/pcp011 ; PMID: 19168457
- GAMETOPHYTIC FACTOR 1, involved in pre-mRNA splicing, is essential for megagametogenesis and embryogenesis in Arabidopsis. DOI: 10.1111/j.1744-7909.2008.00783.x ; PMID: 19261069
- Interaction between RNA helicase ROOT INITIATION DEFECTIVE 1 and GAMETOPHYTIC FACTOR 1 is involved in female gametophyte development in Arabidopsis. DOI: 10.1093/jxb/erw341 ; PMID: 27683728
- CLE-CLAVATA1 peptide-receptor signaling module regulates the expansion of plant root systems in a nitrogen-dependent manner. DOI: 10.1073/pnas.1319953111 ; PMID: 24449877
- CLE Peptide Signaling and Crosstalk with Phytohormones and Environmental Stimuli. DOI: 10.3389/fpls.2015.01211 ; PMID: 26779239
- CLE-CLAVATA1 Signaling Pathway Modulates Lateral Root Development under Sulfur Deficiency. DOI: 10.3390/plants8040103 ; PMID: 31003469
- Root-specific CLE3 expression is required for WRKY33 activation in Arabidopsis shoots. DOI: 10.1007/s11103-021-01234-9 ; PMID: 35038066
- Long-distance translocation of CLAVATA3/ESR-related 2 peptide and its positive effect on roots sucrose status. DOI: 10.1093/plphys/kiac227 ; PMID: 35567530
- CLE3 and its homologs share overlapping functions in the modulation of lateral root formation through CLV1 and BAM1 in Arabidopsis thaliana. DOI: 10.1111/tpj.16103 ; PMID: 36628476
Gene Resources
- UniProt: A0A178WB22
- EMBL: LUHQ01000001
- AlphaFoldDB: A0A178WB22
- EnsemblPlants: AT1G04180.1
- Gramene: AT1G04180.1
- KEGG: ath:AT1G04180
- Orthologous matrix: FGISVMM
- ExpressionAtlas: AT1G04180
- InterPro: IPR020946, IPR036188, IPR050982
- PANTHER: PTHR43539, PTHR43539:SF43
- SUPFAM: SSF51905
- Gene3D: 3.50.50.60
- SWISS-MODEL: A0A178WB22
Homologs
- Capsicum annuum Bs3, Bs3-E
- Cucumis sativus CsYUC10b
- Glycine max GmYUC2a, GmYUC2a
- Hordeum vulgare HORVU7Hr1G007860
- Oryza sativa OsYUCCA7;OsYUC7, OsYUCCA6;OsYUC6, OsYUCCA3, OsYUCCA4;OsYUC4, OsYUCCA5, OsYUCCA2, OsFMO;OsCOW1, OsYUCCA1;OsYUC1, OsYUC11, OsYUC12, OsYUC9
- Panicum virgatum Pavir.9KG201100
- Triticum aestivum TaYUC10.3
Sequences
cDNA Sequence
- >AT1G04180.1
AAACCAATAGATCTCATTTCTCATAATACAACAAAAACTAACATTCAACTTCACTACATATACTTTCAAATCGATCAAAACCCACCCTCAAAACATATACTTGCTTTCATTCAAAAACTCACTCAAGAAAATGGAGAATATGTTTAGACTCATGGCAAGTGAAGAATATTTCTCAGAGCGGCGATGTGTTTGGGTCAACGGTCCGGTTATCGTAGGAGCTGGTCCATCCGGTTTAGCTACAGCAGCTTGTCTACATGATCAAGGAGTCCCATTCGTTGTGGTCGAGAGATCAGATTGCATAGCGTCACTGTGGCAAAAACGAACCTACGATAGGCTCAAGCTTCACTTGCCCAAGAAATTCTGCCAATTACCGAAAATGCCCTTCCCGGATCACTACCCTGAATACCCAACGAAACGACAGTTCATCGATTACCTTGAGTCATACGCAAACCGGTTCGATATTAAACCGGAGTTTAATAAAAGCGTTGAGTCTGCTCGGTTTGATGAAACTAGCGGGCTATGGAGGGTTAGAACAACCTCAGACGGAGAGGAGATGGAATATATTTGCCGGTGGTTGGTGGTGGCGACGGGAGAAAACGCCGAACGTGTTGTCCCAGAGATTAATGGTCTTATGACGGAGTTTGACGGAGAAGTGATTCACGCTTGTGAGTATAAGTCCGGCGAGAAATTCAGAGGAAAGAGAGTTCTTGTCGTCGGATGTGGAAACTCAGGCATGGAAGTCTCTCTTGATCTTGCTAACCACAATGCAATTACTTCCATGGTCGTTAGAAGCTCGGTTCATGTTTTACCGAGGGAGATTATGGGGAAATCAACATTTGGAATCTCAGTGATGATGATGAAGTGGCTACCTTTATGGCTCGTAGACAAGCTTCTGCTTATCTTATCGTGGTTGGTTCTAGGGAGCTTATCAAACTATGGGCTTAAAAGGCCTGACATCGGCCCAATGGAGCTTAAAAGCATGACAGGAAAGACGCCGGTTCTTGACATCGGTGCTCTGGAGAAGATAAAATCCGGCGACGTAGAAATTGTACCTGCAATCAAACAGTTCTCGCGTCACCACGTGGAGCTCGTAGATGGTCAGAAGCTAGATATCGACGCTGTGGTTCTCGCCACCGGTTATCGTAGCAACGTCCCTTCTTGGCTTCAGGAAAGTGAGTTCTTTTCGAAAAATGGGTTTCCGAAATCGCCGTTTCCAAACGCGTGGAAAGGGAAATCGGGATTATACGCGGCCGGATTCACGAGAAAAGGGTTGGCTGGAGCATCAGTAGACGCCGTTAACATCGCTCAAGACATTGGAAATGTGTGGAGAGAAGAGACCAAACGACAGAAGATGAGAAGAAATGTGGGTCACCGAAGATGCATCTCAGTTGCTTAAGCCTCACGTTAGGGGTTTTCAATAGGATATATATAAATAAATCGATTTATTTGTAAAAATATACAAAAGGAAAAATGTAAAATAGAGTAAAGAGAGCCCTCTCCTGAAGTCCCCGCCTGTTTTTTTTATTACACAGCTGTAGGGGCGTTTTGTAAAATTAGGATGATGTGGCTCTCTTATTTTTTTTTTATTACCAATTTACCATATATGCTTATGTAAAACCTTTATGGAGGTAAATCAAAATTAGTGTTTG
CDS Sequence
- >AT1G04180.1
ATGGAGAATATGTTTAGACTCATGGCAAGTGAAGAATATTTCTCAGAGCGGCGATGTGTTTGGGTCAACGGTCCGGTTATCGTAGGAGCTGGTCCATCCGGTTTAGCTACAGCAGCTTGTCTACATGATCAAGGAGTCCCATTCGTTGTGGTCGAGAGATCAGATTGCATAGCGTCACTGTGGCAAAAACGAACCTACGATAGGCTCAAGCTTCACTTGCCCAAGAAATTCTGCCAATTACCGAAAATGCCCTTCCCGGATCACTACCCTGAATACCCAACGAAACGACAGTTCATCGATTACCTTGAGTCATACGCAAACCGGTTCGATATTAAACCGGAGTTTAATAAAAGCGTTGAGTCTGCTCGGTTTGATGAAACTAGCGGGCTATGGAGGGTTAGAACAACCTCAGACGGAGAGGAGATGGAATATATTTGCCGGTGGTTGGTGGTGGCGACGGGAGAAAACGCCGAACGTGTTGTCCCAGAGATTAATGGTCTTATGACGGAGTTTGACGGAGAAGTGATTCACGCTTGTGAGTATAAGTCCGGCGAGAAATTCAGAGGAAAGAGAGTTCTTGTCGTCGGATGTGGAAACTCAGGCATGGAAGTCTCTCTTGATCTTGCTAACCACAATGCAATTACTTCCATGGTCGTTAGAAGCTCGGTTCATGTTTTACCGAGGGAGATTATGGGGAAATCAACATTTGGAATCTCAGTGATGATGATGAAGTGGCTACCTTTATGGCTCGTAGACAAGCTTCTGCTTATCTTATCGTGGTTGGTTCTAGGGAGCTTATCAAACTATGGGCTTAAAAGGCCTGACATCGGCCCAATGGAGCTTAAAAGCATGACAGGAAAGACGCCGGTTCTTGACATCGGTGCTCTGGAGAAGATAAAATCCGGCGACGTAGAAATTGTACCTGCAATCAAACAGTTCTCGCGTCACCACGTGGAGCTCGTAGATGGTCAGAAGCTAGATATCGACGCTGTGGTTCTCGCCACCGGTTATCGTAGCAACGTCCCTTCTTGGCTTCAGGAAAGTGAGTTCTTTTCGAAAAATGGGTTTCCGAAATCGCCGTTTCCAAACGCGTGGAAAGGGAAATCGGGATTATACGCGGCCGGATTCACGAGAAAAGGGTTGGCTGGAGCATCAGTAGACGCCGTTAACATCGCTCAAGACATTGGAAATGTGTGGAGAGAAGAGACCAAACGACAGAAGATGAGAAGAAATGTGGGTCACCGAAGATGCATCTCAGTTGCTTAA
Protein Sequence
- >AT1G04180.1
MENMFRLMASEEYFSERRCVWVNGPVIVGAGPSGLATAACLHDQGVPFVVVERSDCIASLWQKRTYDRLKLHLPKKFCQLPKMPFPDHYPEYPTKRQFIDYLESYANRFDIKPEFNKSVESARFDETSGLWRVRTTSDGEEMEYICRWLVVATGENAERVVPEINGLMTEFDGEVIHACEYKSGEKFRGKRVLVVGCGNSGMEVSLDLANHNAITSMVVRSSVHVLPREIMGKSTFGISVMMMKWLPLWLVDKLLLILSWLVLGSLSNYGLKRPDIGPMELKSMTGKTPVLDIGALEKIKSGDVEIVPAIKQFSRHHVELVDGQKLDIDAVVLATGYRSNVPSWLQESEFFSKNGFPKSPFPNAWKGKSGLYAAGFTRKGLAGASVDAVNIAQDIGNVWREETKRQKMRRNVGHRRCISVA