Information report for AT1G03905
Gene Details
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Functional Descriptions
- PO:0000230 — inflorescence meristem — meristema de la inflorescencia (Spanish, exact), 花序分裂組織 (Japanese, exact)
- PO:0009030 — carpel — carpelo (Spanish, exact), 心皮 (Japanese, exact), Poaceae carpel (narrow), Zea carpel (narrow), pistil (broad)
- PO:0000084 — plant sperm cell — célula espermática o esperma (Spanish, exact), male gamete (exact), microgamete (exact), 植物精子細胞 (Japanese, exact), sperm nucleus (related), sperm cell (broad)
- PO:0000293 — guard cell — célula guardiana (Spanish, exact), occlusive cell (exact), 孔辺細胞 (Japanese, exact)
Functional Keywords
Literature and News
- Chlorophyll breakdown: pheophorbide a oxygenase is a Rieske-type iron-sulfur protein, encoded by the accelerated cell death 1 gene. DOI: 10.1073/pnas.2036571100 ; PMID: 14657372
- Molecular events in senescing Arabidopsis leaves. DOI: 10.1111/j.1365-313X.2004.02160.x ; PMID: 15272878
- A rapid high-throughput method for the detection and quantification of RNA editing based on high-resolution melting of amplicons. DOI: 10.1093/nar/gkm640 ; PMID: 17726051
- A comparative genomics approach identifies a PPR-DYW protein that is essential for C-to-U editing of the Arabidopsis chloroplast accD transcript. DOI: 10.1261/rna.1533909 ; PMID: 19395655
- CLB19, a pentatricopeptide repeat protein required for editing of rpoA and clpP chloroplast transcripts. DOI: 10.1111/j.1365-313X.2008.03634.x ; PMID: 18657233
Gene Resources
- UniProt: A0A384KMF1
- EMBL: LUHQ01000001
- AlphaFoldDB: A0A384KMF1
- EnsemblPlants: AT1G03905.2, AT1G03905.3, AT1G03905.4
- Gramene: AT1G03905.2, AT1G03905.3, AT1G03905.4
- Orthologous matrix: WATHLYY
- ExpressionAtlas: AT1G03905
- InterPro: IPR003959, IPR027417
- PANTHER: PTHR43158, PTHR43158:SF2
- SUPFAM: SSF52540
- Gene3D: 3.40.50.300
- OrthoDB: A0A384KMF1
- SWISS-MODEL: A0A384KMF1
Homologs
- Lotus japonicus Lj5g0025284
- Lupinus albus Lalb_Chr02g0141291
- Populus trichocarpa Potri.005G073050, Potri.005G073100
- Prunus avium Pav_sc0001405.1_g1760.1.mk
- Prunus persica Prupe.2G303100
Sequences
cDNA Sequence
- >AT1G03905.4
AAACAATGTCGGTCCACCAACTAATCGTTACCTACTCCTTGTATCTGACCGCTTGAGAGCTTTTGGAGACTGGCAAAAATGGCGGAGAAAGATGCGACGGCGAGTGGCGATGACGCCATTAGAGTTAGCGGTATGCAATTCGCATACGAAGTTGAGGATCCAATATTCTTCGACTTCAACCTCGATCTTCCAGCTGGTTCTCGCTGTCTTCTGGTTGGTGCCAATGGATCTGGTACGATGATCGATTTCTAGAGAGAGATTTTCCTTGTAGTTAGTTTTCATTTTTTTTCTGTCTTGGGGTCACAGGTTTTGGATCAGCGATTCGACTTGTTATGTTTTCGGCGAGAATGGAAAGTTAAAGACATCTTTTGTTTGATTTGATTTAAAGTTTGGAACTTTGAAAATTGGCCCTATGCCTCTGCAATTTCAGAATTTATTTGCCAGTCTGAAATTGGAATCATCCGTTTCTGTCGTTCTGGGGTTGGGTTTTTTTGACGTCGTTGTAGTAGAATCCGGTTTGCCATGTGATCTTAATACTGCGATTAGCTTGAGGTATTTACCATGTTCAAAACTACTCCAGGCTATTGAATTTGTTTTGTTTTTTCTGGAAGACTAATGCTTGTGTTCCTTTGGTAAATTTGTTAAGGCAAGACAACCTTATTGAAGATTCTGGCTGGAAAGCATATGGTGGGAGGAAAGAACGTTGTACAAGTTCTTAGCCGCTCGGCTTTCCATGATACTCAACTTGTTTGCAGTGGTGACTTGTCTTACCTTGGAGGATCATGGAGTAAAACCGTTGGTTCAGCTGGAGAGGTTCCTCTCCAGGGAGATTTCTCAGCAGAACATATGATATTTGGAGTTGAAGGAACTGATCCCGTGAGAAGAGAAAAACTGATTGATCTTCTTGATATCAATCTTCAATGGCGTATGCATAAGGTTTCTGATGGGCAGAAACGGCGCGTGCAGATATGTATGGGACTCTTACATCCATTCAAGGTGTTATTACTCGATGAGGTCACTGTTGACCTAGACGTCGTTGCAAGGATGGATTTGCTGGAATTCTTCAAAGAAGAATGTGATCAGAGAGGAGCTACAATCGTGTATGCAACTCACATATTCGACGGGCTAGAGACATGGGCGACACATTTGGCCTACATTCAGGACGGTGAGCTGAATCGTTTATCGAAAATGACAGATATTGAGGAGCTGAAAACTTCACCCAACCTCCTCTCCGTGGTAGAATCTTGGCTCCGTTCTGAAATCAAACTCGTGAAGAAGAAGAAGAAGCCTGTGGCGCCATGGAAACCATCTCCATTCGATAACTCTCCTTTTAGATCATCGAGACACATGGCTTATTACCGATGATTGGTGATTACCAGTGAGATCATTGATCCTATATATGAATTTGATAATCGGTAAGAATAAAGACACCCGAGAGTAGTTCAGATTTCGTGTGTGTAGCTGCTATTTACCACTTGGCTCATTGAAGAATAGACAACAAATTGTACTTACAATTGTGCTGATATATATACCACAGTGATTTTCACAAAATGGGAAGTGAATTTATTTTACCG - >AT1G03905.1
AAACAATGTCGGTCCACCAACTAATCGTTACCTACTCCTTGTATCTGACCGCTTGAGAGCTTTTGGAGACTGGCAAAAATGGCGGAGAAAGATGCGACGGCGAGTGGCGATGACGCCATTAGAGTTAGCGGTATGCAATTCGCATACGAAGTTGAGGATCCAATATTCTTCGACTTCAACCTCGATCTTCCAGCTGGTTCTCGCTGTCTTCTGGTTGGTGCCAATGGATCTGGTACGATGATCGATTTCTAGAGAGAGATTTTCCTTGTAGTTAGTTTTCATTTTTTTTCTGTCTTGGGGTCACAGGTTTTGGATCAGCGATTCGACTTGTTATGTTTTCGGCGAGAATGGAAAGTTAAAGACATCTTTTGTTTGATTTGATTTAAAGTTTGGAACTTTGAAAATTGGCCCTATGCCTCTGCAATTTCAGAATTTATTTGCCAGTCTGAAATTGGAATCATCCGTTTCTGTCGTTCTGGGGTTGGGTTTTTTTGACGTCGTTGTAGTAGAATCCGGTTTGCCATGTGATCTTAATACTGCGATTAGCTTGAGGTATTTACCATGTTCAAAACTACTCCAGGCTATTGAATTTGTTTTGTTTTTTCTGGAAGACTAATGCTTGTGTTCCTTTGGTAAATTTGTTAAGGCAAGACAACCTTATTGAAGATTCTGGCTGGAAAGCATATGGTGGGAGGAAAGAACGTTGTACAAGTTCTTAGCCGCTCGGCTTTCCATGATACTCAACTTGTTTGCAGTGGTGACTTGTCTTACCTTGGAGGATCATGGAGTAAAACCGTTGGTTCAGCTGGAGAGGTTCCTCTCCAGGGAGATTTCTCAGCAGAACATATGATATTTGGAGTTGAAGGAACTGATCCCGTGAGAAGAGAAAAACTGATTGATCTTCTTGATATCAATCTTCAATGGCGTATGCATAAGGTTTCTGATGGGCAGAAACGGCGCGTGCAGATATGTATGGGACTCTTACATCCATTCAAGGTGTTATTACTCGATGAGGTCACTGTTGACCTAGACGTCGTTGCAAGGATGGATTTGCTGGAATTCTTCAAAGAAGAATGTGATCAGAGAGGAGCTACAATCGTGTATGCAACTCACATATTCGACGGGCTAGAGACATGGGCGACACATTTGGCCTACATTCAGGACGGTGAGCTGAATCGTTTATCGAAAATGACAGATATTGAGGAGCTGAAAACTTCACCCAACCTCCTCTCCGTGGTAGAATCTTGGCTCCGTTCTGAAATCAAACTCGTGAAGAAGAAGAAGAAGCCTGTGGCGCCATGGAAACCATCTCCATTCGATAACTCTCCTTTTAGATCATCGAGACACATGGCTTATTACCGATGATTGGTGATTACCAGTGAGATCATTGATCCTATATATGAATTTGATAATCGGTAAGAATAAAGACACCCGAGAGTAGTTCAGATTTCGTGTGTGTAGCTGCTATTTACCACTTGGCTCATTGAAGAATAGACAACAAATTGTACTTACAATTGTGCTGATATATATACCACAGTGATTTTCACAAAATGGGAAGTGAATTTATTTTACCG - >AT1G03905.2
AAACAATGTCGGTCCACCAACTAATCGTTACCTACTCCTTGTATCTGACCGCTTGAGAGCTTTTGGAGACTGGCAAAAATGGCGGAGAAAGATGCGACGGCGAGTGGCGATGACGCCATTAGAGTTAGCGGTATGCAATTCGCATACGAAGTTGAGGATCCAATATTCTTCGACTTCAACCTCGATCTTCCAGCTGGTTCTCGCTGTCTTCTGGTTGGTGCCAATGGATCTGGTACGATGATCGATTTCTAGAGAGAGATTTTCCTTGTAGTTAGTTTTCATTTTTTTTCTGTCTTGGGGTCACAGGTTTTGGATCAGCGATTCGACTTGTTATGTTTTCGGCGAGAATGGAAAGTTAAAGACATCTTTTGTTTGATTTGATTTAAAGTTTGGAACTTTGAAAATTGGCCCTATGCCTCTGCAATTTCAGAATTTATTTGCCAGTCTGAAATTGGAATCATCCGTTTCTGTCGTTCTGGGGTTGGGTTTTTTTGACGTCGTTGTAGTAGAATCCGGTTTGCCATGTGATCTTAATACTGCGATTAGCTTGAGGTATTTACCATGTTCAAAACTACTCCAGGCTATTGAATTTGTTTTGTTTTTTCTGGAAGACTAATGCTTGTGTTCCTTTGGTAAATTTGTTAAGGCAAGACAACCTTATTGAAGATTCTGGCTGGAAAGCATATGGTGGGAGGAAAGAACGTTGTACAAGTTCTTAGCCGCTCGGCTTTCCATGATACTCAACTTGTTTGCAGTGGTGACTTGTCTTACCTTGGAGGATCATGGAGTAAAACCGTTGGTTCAGCTGGAGAGGTTCCTCTCCAGGGAGATTTCTCAGCAGAACATATGATATTTGGAGTTGAAGGAACTGATCCCGTGAGAAGAGAAAAACTGATTGATCTTCTTGATATCAATCTTCAATGGCGTATGCATAAGGTTTCTGATGGGCAGAAACGGCGCGTGCAGATATGTATGGGACTCTTACATCCATTCAAGGTGTTATTACTCGATGAGGTCACTGTTGACCTAGACGTCGTTGCAAGGATGGATTTGCTGGAATTCTTCAAAGAAGAATGTGATCAGAGAGGAGCTACAATCGTGTATGCAACTCACATATTCGACGGGCTAGAGACATGGGCGACACATTTGGCCTACATTCAGGACGGTGAGCTGAATCGTTTATCGAAAATGACAGATATTGAGGAGCTGAAAACTTCACCCAACCTCCTCTCCGTGGTAGAATCTTGGCTCCGTTCTGAAATCAAACTCGTGAAGAAGAAGAAGAAGCCTGTGGCGCCATGGAAACCATCTCCATTCGATAACTCTCCTTTTAGATCATCGAGACACATGGCTTATTACCGATGATTGGTGATTACCAGTGAGATCATTGATCCTATATATGAATTTGATAATCGGTAAGAATAAAGACACCCGAGAGTAGTTCAGATTTCGTGTGTGTAGCTGCTATTTACCACTTGGCTCATTGAAGAATAGACAACAAATTGTACTTACAATTGTGCTGATATATATACCACAGTGATTTTCACAAAATGGGAAGTGAATTTATTTTACCG - >AT1G03905.3
AAACAATGTCGGTCCACCAACTAATCGTTACCTACTCCTTGTATCTGACCGCTTGAGAGCTTTTGGAGACTGGCAAAAATGGCGGAGAAAGATGCGACGGCGAGTGGCGATGACGCCATTAGAGTTAGCGGTATGCAATTCGCATACGAAGTTGAGGATCCAATATTCTTCGACTTCAACCTCGATCTTCCAGCTGGTTCTCGCTGTCTTCTGGTTGGTGCCAATGGATCTGGTACGATGATCGATTTCTAGAGAGAGATTTTCCTTGTAGTTAGTTTTCATTTTTTTTCTGTCTTGGGGTCACAGGTTTTGGATCAGCGATTCGACTTGTTATGTTTTCGGCGAGAATGGAAAGTTAAAGACATCTTTTGTTTGATTTGATTTAAAGTTTGGAACTTTGAAAATTGGCCCTATGCCTCTGCAATTTCAGAATTTATTTGCCAGTCTGAAATTGGAATCATCCGTTTCTGTCGTTCTGGGGTTGGGTTTTTTTGACGTCGTTGTAGTAGAATCCGGTTTGCCATGTGATCTTAATACTGCGATTAGCTTGAGGTATTTACCATGTTCAAAACTACTCCAGGCTATTGAATTTGTTTTGTTTTTTCTGGAAGACTAATGCTTGTGTTCCTTTGGTAAATTTGTTAAGGCAAGACAACCTTATTGAAGATTCTGGCTGGAAAGCATATGGTGGGAGGAAAGAACGTTGTACAAGTTCTTAGCCGCTCGGCTTTCCATGATACTCAACTTGTTTGCAGTGGTGACTTGTCTTACCTTGGAGGATCATGGAGTAAAACCGTTGGTTCAGCTGGAGAGGTTCCTCTCCAGGGAGATTTCTCAGCAGAACATATGATATTTGGAGTTGAAGGAACTGATCCCGTGAGAAGAGAAAAACTGATTGATCTTCTTGATATCAATCTTCAATGGCGTATGCATAAGGTTTCTGATGGGCAGAAACGGCGCGTGCAGATATGTATGGGACTCTTACATCCATTCAAGGTGTTATTACTCGATGAGGTCACTGTTGACCTAGACGTCGTTGCAAGGATGGATTTGCTGGAATTCTTCAAAGAAGAATGTGATCAGAGAGGAGCTACAATCGTGTATGCAACTCACATATTCGACGGGCTAGAGACATGGGCGACACATTTGGCCTACATTCAGGACGGTGAGCTGAATCGTTTATCGAAAATGACAGATATTGAGGAGCTGAAAACTTCACCCAACCTCCTCTCCGTGGTAGAATCTTGGCTCCGTTCTGAAATCAAACTCGTGAAGAAGAAGAAGAAGCCTGTGGCGCCATGGAAACCATCTCCATTCGATAACTCTCCTTTTAGATCATCGAGACACATGGCTTATTACCGATGATTGGTGATTACCAGTGAGATCATTGATCCTATATATGAATTTGATAATCGGTAAGAATAAAGACACCCGAGAGTAGTTCAGATTTCGTGTGTGTAGCTGCTATTTACCACTTGGCTCATTGAAGAATAGACAACAAATTGTACTTACAATTGTGCTGATATATATACCACAGTGATTTTCACAAAATGGGAAGTGAATTTATTTTACCG
CDS Sequence
- >AT1G03905.4
ATGGTGGGAGGAAAGAACGTTGTACAAGTTCTTAGCCGCTCGGCTTTCCATGATACTCAACTTGTTTGCAGTGGTGACTTGTCTTACCTTGGAGGATCATGGAGTAAAACCGTTGGTTCAGCTGGAGAGGTTCCTCTCCAGGGAGATTTCTCAGCAGAACATATGATATTTGGAGTTGAAGGAACTGATCCCGTGAGAAGAGAAAAACTGATTGATCTTCTTGATATCAATCTTCAATGGCGTATGCATAAGGTTTCTGATGGGCAGAAACGGCGCGTGCAGATATGTATGGGACTCTTACATCCATTCAAGGTGTTATTACTCGATGAGGTCACTGTTGACCTAGACGTCGTTGCAAGGATGGATTTGCTGGAATTCTTCAAAGAAGAATGTGATCAGAGAGGAGCTACAATCGTGTATGCAACTCACATATTCGACGGGCTAGAGACATGGGCGACACATTTGGCCTACATTCAGGACGGTGAGCTGAATCGTTTATCGAAAATGACAGATATTGAGGAGCTGAAAACTTCACCCAACCTCCTCTCCGTGGTAGAATCTTGGCTCCGTTCTGAAATCAAACTCGTGAAGAAGAAGAAGAAGCCTGTGGCGCCATGGAAACCATCTCCATTCGATAACTCTCCTTTTAGATCATCGAGACACATGGCTTATTACCGATGA - >AT1G03905.1
ATGGTGGGAGGAAAGAACGTTGTACAAGTTCTTAGCCGCTCGGCTTTCCATGATACTCAACTTGTTTGCAGTGGTGACTTGTCTTACCTTGGAGGATCATGGAGTAAAACCGTTGGTTCAGCTGGAGAGGTTCCTCTCCAGGGAGATTTCTCAGCAGAACATATGATATTTGGAGTTGAAGGAACTGATCCCGTGAGAAGAGAAAAACTGATTGATCTTCTTGATATCAATCTTCAATGGCGTATGCATAAGGTTTCTGATGGGCAGAAACGGCGCGTGCAGATATGTATGGGACTCTTACATCCATTCAAGGTGTTATTACTCGATGAGGTCACTGTTGACCTAGACGTCGTTGCAAGGATGGATTTGCTGGAATTCTTCAAAGAAGAATGTGATCAGAGAGGAGCTACAATCGTGTATGCAACTCACATATTCGACGGGCTAGAGACATGGGCGACACATTTGGCCTACATTCAGGACGGTGAGCTGAATCGTTTATCGAAAATGACAGATATTGAGGAGCTGAAAACTTCACCCAACCTCCTCTCCGTGGTAGAATCTTGGCTCCGTTCTGAAATCAAACTCGTGAAGAAGAAGAAGAAGCCTGTGGCGCCATGGAAACCATCTCCATTCGATAACTCTCCTTTTAGATCATCGAGACACATGGCTTATTACCGATGA - >AT1G03905.2
ATGGTGGGAGGAAAGAACGTTGTACAAGTTCTTAGCCGCTCGGCTTTCCATGATACTCAACTTGTTTGCAGTGGTGACTTGTCTTACCTTGGAGGATCATGGAGTAAAACCGTTGGTTCAGCTGGAGAGGTTCCTCTCCAGGGAGATTTCTCAGCAGAACATATGATATTTGGAGTTGAAGGAACTGATCCCGTGAGAAGAGAAAAACTGATTGATCTTCTTGATATCAATCTTCAATGGCGTATGCATAAGGTTTCTGATGGGCAGAAACGGCGCGTGCAGATATGTATGGGACTCTTACATCCATTCAAGGTGTTATTACTCGATGAGGTCACTGTTGACCTAGACGTCGTTGCAAGGATGGATTTGCTGGAATTCTTCAAAGAAGAATGTGATCAGAGAGGAGCTACAATCGTGTATGCAACTCACATATTCGACGGGCTAGAGACATGGGCGACACATTTGGCCTACATTCAGGACGGTGAGCTGAATCGTTTATCGAAAATGACAGATATTGAGGAGCTGAAAACTTCACCCAACCTCCTCTCCGTGGTAGAATCTTGGCTCCGTTCTGAAATCAAACTCGTGAAGAAGAAGAAGAAGCCTGTGGCGCCATGGAAACCATCTCCATTCGATAACTCTCCTTTTAGATCATCGAGACACATGGCTTATTACCGATGA - >AT1G03905.3
ATGGTGGGAGGAAAGAACGTTGTACAAGTTCTTAGCCGCTCGGCTTTCCATGATACTCAACTTGTTTGCAGTGGTGACTTGTCTTACCTTGGAGGATCATGGAGTAAAACCGTTGGTTCAGCTGGAGAGGTTCCTCTCCAGGGAGATTTCTCAGCAGAACATATGATATTTGGAGTTGAAGGAACTGATCCCGTGAGAAGAGAAAAACTGATTGATCTTCTTGATATCAATCTTCAATGGCGTATGCATAAGGTTTCTGATGGGCAGAAACGGCGCGTGCAGATATGTATGGGACTCTTACATCCATTCAAGGTGTTATTACTCGATGAGGTCACTGTTGACCTAGACGTCGTTGCAAGGATGGATTTGCTGGAATTCTTCAAAGAAGAATGTGATCAGAGAGGAGCTACAATCGTGTATGCAACTCACATATTCGACGGGCTAGAGACATGGGCGACACATTTGGCCTACATTCAGGACGGTGAGCTGAATCGTTTATCGAAAATGACAGATATTGAGGAGCTGAAAACTTCACCCAACCTCCTCTCCGTGGTAGAATCTTGGCTCCGTTCTGAAATCAAACTCGTGAAGAAGAAGAAGAAGCCTGTGGCGCCATGGAAACCATCTCCATTCGATAACTCTCCTTTTAGATCATCGAGACACATGGCTTATTACCGATGA
Protein Sequence
- >AT1G03905.4
MVGGKNVVQVLSRSAFHDTQLVCSGDLSYLGGSWSKTVGSAGEVPLQGDFSAEHMIFGVEGTDPVRREKLIDLLDINLQWRMHKVSDGQKRRVQICMGLLHPFKVLLLDEVTVDLDVVARMDLLEFFKEECDQRGATIVYATHIFDGLETWATHLAYIQDGELNRLSKMTDIEELKTSPNLLSVVESWLRSEIKLVKKKKKPVAPWKPSPFDNSPFRSSRHMAYYR - >AT1G03905.1
MVGGKNVVQVLSRSAFHDTQLVCSGDLSYLGGSWSKTVGSAGEVPLQGDFSAEHMIFGVEGTDPVRREKLIDLLDINLQWRMHKVSDGQKRRVQICMGLLHPFKVLLLDEVTVDLDVVARMDLLEFFKEECDQRGATIVYATHIFDGLETWATHLAYIQDGELNRLSKMTDIEELKTSPNLLSVVESWLRSEIKLVKKKKKPVAPWKPSPFDNSPFRSSRHMAYYR - >AT1G03905.2
MVGGKNVVQVLSRSAFHDTQLVCSGDLSYLGGSWSKTVGSAGEVPLQGDFSAEHMIFGVEGTDPVRREKLIDLLDINLQWRMHKVSDGQKRRVQICMGLLHPFKVLLLDEVTVDLDVVARMDLLEFFKEECDQRGATIVYATHIFDGLETWATHLAYIQDGELNRLSKMTDIEELKTSPNLLSVVESWLRSEIKLVKKKKKPVAPWKPSPFDNSPFRSSRHMAYYR - >AT1G03905.3
MVGGKNVVQVLSRSAFHDTQLVCSGDLSYLGGSWSKTVGSAGEVPLQGDFSAEHMIFGVEGTDPVRREKLIDLLDINLQWRMHKVSDGQKRRVQICMGLLHPFKVLLLDEVTVDLDVVARMDLLEFFKEECDQRGATIVYATHIFDGLETWATHLAYIQDGELNRLSKMTDIEELKTSPNLLSVVESWLRSEIKLVKKKKKPVAPWKPSPFDNSPFRSSRHMAYYR