Information report for AT1G03840
Gene Details
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Functional Descriptions
- PO:0009030 — carpel — carpelo (Spanish, exact), 心皮 (Japanese, exact), Poaceae carpel (narrow), Zea carpel (narrow), pistil (broad)
- PO:0000039 — shoot axis vascular system — sistema vascular del eje del epiblasto (epiblastema) (Spanish, exact), シュート軸維管系 (Japanese, exact), branch vascular system (narrow), stem vascular system (narrow)
- PO:0000045 — embryo root — embryonic root (exact), raíz embriónica (Spanish, exact), 初期の根、胚根 (Japanese, exact)
- PO:0006081 — primary root apical meristem — meristema apical de la raíz primaria (Spanish, exact), 一次根頂端分裂組織 (Japanese, exact), apical meristem of primary root (related), embryonic root meristem (related)
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0000060 — root cortex-endodermis initial cell — célula inicial del cortex/endodermis de la raíz (Spanish, exact), root cortex-endodermis initial (exact), root cortex-endodermis stem cell (exact), 根皮層内皮始原細胞 (Japanese, exact)
- PO:0020124 — root stele — estela de la raíz (Spanish, exact), 根中心柱 (Japanese, exact), root vascular cylinder (related)
- PO:0000084 — plant sperm cell — célula espermática o esperma (Spanish, exact), male gamete (exact), microgamete (exact), 植物精子細胞 (Japanese, exact), sperm nucleus (related), sperm cell (broad)
Functional Keywords
Literature and News
- TraB family proteins are components of ER-mitochondrial contact sites and regulate ER-mitochondrial interactions and mitophagy. DOI: 10.1038/s41467-022-33402-w ; PMID: 36163196
- TraB, a novel plant ER-mitochondrial contact site protein functions as a mitophagy receptor in plants. DOI: 10.1080/15548627.2022.2151190 ; PMID: 36420795
- A member of the CONSTANS-Like protein family is a putative regulator of reactive oxygen species homeostasis and spaceflight physiological adaptation. DOI: 10.1093/aobpla/ply075 ; PMID: 30705745
- Expression profiles of Arabidopsis thaliana in mineral deficiencies reveal novel transporters involved in metal homeostasis. DOI: 10.1074/jbc.M309338200 ; PMID: 13129917
- Comparative microarray analysis of Arabidopsis thaliana and Arabidopsis halleri roots identifies nicotianamine synthase, a ZIP transporter and other genes as potential metal hyperaccumulation factors. DOI: 10.1046/j.1365-313x.2003.01960.x ; PMID: 14690510
- Gene expression signatures from three genetically separable resistance gene signaling pathways for downy mildew resistance. DOI: 10.1104/pp.104.040444 ; PMID: 15181204
- Large-scale collection and annotation of full-length enriched cDNAs from a model halophyte, Thellungiella halophila. DOI: 10.1186/1471-2229-8-115 ; PMID: 19014467
- MTP1-dependent Zn sequestration into shoot vacuoles suggests dual roles in Zn tolerance and accumulation in Zn-hyperaccumulating plants. DOI: 10.1111/j.1365-313X.2008.03754.x ; PMID: 19054361
- Arabidopsis and rice showed a distinct pattern in ZIPs genes expression profile in response to Cd stress. DOI: 10.1186/s40529-018-0238-6 ; PMID: 30255457
- The R2R3-MYB Transcription Factor MYB49 Regulates Cadmium Accumulation. DOI: 10.1104/pp.18.01380 ; PMID: 30782964
- Iron Availability within the Leaf Vasculature Determines the Magnitude of Iron Deficiency Responses in Source and Sink Tissues in Arabidopsis. DOI: 10.1093/pcp/pcac046 ; PMID: 35388430
- Transcriptional regulation of secondary growth in Arabidopsis thaliana. DOI: 10.1093/jxb/erg304 ; PMID: 14585825
- Arabidopsis Endoplasmic Reticulum-Localized UBAC2 Proteins Interact with PAMP-INDUCED COILED-COIL to Regulate Pathogen-Induced Callose Deposition and Plant Immunity. DOI: 10.1105/tpc.18.00334 ; PMID: 30606781
- Identification and characterization of aluminum tolerance loci in Arabidopsis (Landsberg erecta x Columbia) by quantitative trait locus mapping. A physiologically simple but genetically complex trait. DOI: 10.1104/pp.103.023085 ; PMID: 12805622
- PCC1: a merging point for pathogen defence and circadian signalling in Arabidopsis. DOI: 10.1007/s00425-003-1143-z ; PMID: 14614626
- Differential mRNA translation contributes to gene regulation under non-stress and dehydration stress conditions in Arabidopsis thaliana. DOI: 10.1111/j.1365-313X.2004.02090.x ; PMID: 15144383
- Catalase deficiency drastically affects gene expression induced by high light in Arabidopsis thaliana. DOI: 10.1111/j.1365-313X.2004.02105.x ; PMID: 15200641
- Dynamic histone acetylation of late embryonic genes during seed germination. DOI: 10.1007/s11103-005-2081-x ; PMID: 16307366
Gene Resources
Homologs
- Brassica napus GSBRNA2T00052497001, GSBRNA2T00150325001, GSBRNA2T00002716001
- Brassica oleracea XP_013603373.1, XP_013584045.1
- Brassica rapa XP_009118688.1, XP_009119358.1, XP_009119357.1
- Raphanus raphanistrum RrC8507_p2, RrC8653_p1
Sequences
cDNA Sequence
- >AT1G03840.2
ATGACAACTGAAGATCAGACAATTTCAAGTAGTGGAGGATATGTCCAAAGCTCATCAACAACTGATCATGTTGATCATCATCATCATGATCAACATGAATCCCTCAATCCTCCTCTTGTCAAGAAGAAGAGAAACCTCCCTGGAAATCCTGAAGCTGAGGTCATAGCTCTATCTCCAAAGACACTTATGGCCACAAATCGTTTCCTCTGCGAGATATGTGGAAAAGGGTTTCAAAGAGACCAGAATCTACAGCTTCACCGTCGAGGACACAACCTCCCATGGAAGCTAAAGCAGAGGACGAGCAAAGAAGTAAGGAAACGAGTGTATGTATGTCCAGAAAAGAGTTGCGTCCACCACCATCCGACGAGGGCACTTGGTGATCTTACCGGCATTAAGAAACATTTTTGTCGGAAACATGGCGAGAAAAAGTGGAAGTGTGAGAAATGCGCCAAGAGATATGCAGTCCAATCTGACTGGAAGGCTCATTCCAAGACTTGTGGGACTAGAGAATATAGATGCGACTGTGGTACAATTTTCTCCAGGAGAGACAGCTTCATTACACATAGAGCGTTCTGTGACGCTTTAGCAGAAGAAACCGCTAGGCTAAACGCAGCCTCGCATCTCAAAAGCTTTGCCGCAACCGCTGGTAGTAATCTAAACTATCATTATCTCATGGGGACACTTATCCCATCACCATCACTACCACAACCACCGTCGTTTCCGTTCGGACCACCGCAACCGCAACATCATCACCACCACCAATTCCCAATCACAACCAACAACTTCGATCATCAAGACGTCATGAAACCAGCGTCTACGCTCTCTTTATGGTCGGGAGGAAATATTAATCATCATCAGCAAGTGACCATCGAGGACCGTATGGCGCCGCAGCCGCATTCACCGCAAGAGGATTACAATTGGGTTTTCGGAAACGCGAATAATCACGGCGAGTTAATAACGACGAGCGATTCACTCATTACTCATGACAATAATATTAATATCGTCCAGAGTAAGGAAAACGCTAACGGGGCAACTTCTCTTTCCGTGCCTTCTCTTTTTAGCAGCGTTGACCAAATTACCCAAGACGCAAACGCTGCTTCTGTGGCTGTTGCAAATATGTCGGCGACTGCGTTACTCCAAAAAGCTGCTCAGATGGGAGCGACTTCTTCTACGTCACCAACGACGACGATTACTACCGACCAATCAGCGTATCTTCAGAGTTTTGCATCGAAGAGTAATCAGATTGTAGAAGATGGTGGCAGCGACAGGTTCTTTGCTTCGTTTGGATCGAACAGTGTCGAGTTAATGAGTAATAATAATAACGGTCTTCACGAGATCGGGAACCCTAGAAACGGCGTTACGGTCGTTTCGGGGATGGGTGAATTACAGAATTACCCTTGGAAGCGTAGAAGAGTTGATATTGGGAATGCGGGAGGAGGAGGGCAAACTCGGGATTTTCTTGGGGTTGGTGTACAAACAATATGCCATTCTTCCTCTATCAATGGATGGATTTGAAACACTCTTTAATGGATTTTTCTACCTTATTTATGAGTGAACTTAATTATCAAAGCTGATTTCTTTAATTAATTT - >AT1G03840.1
ATGACAACTGAAGATCAGACAATTTCAAGTAGTGGAGGATATGTCCAAAGCTCATCAACAACTGATCATGTTGATCATCATCATCATGATCAACATGAATCCCTCAATCCTCCTCTTGTCAAGAAGAAGAGAAACCTCCCTGGAAATCCTGAAGCTGAGGTCATAGCTCTATCTCCAAAGACACTTATGGCCACAAATCGTTTCCTCTGCGAGATATGTGGAAAAGGGTTTCAAAGAGACCAGAATCTACAGCTTCACCGTCGAGGACACAACCTCCCATGGAAGCTAAAGCAGAGGACGAGCAAAGAAGTAAGGAAACGAGTGTATGTATGTCCAGAAAAGAGTTGCGTCCACCACCATCCGACGAGGGCACTTGGTGATCTTACCGGCATTAAGAAACATTTTTGTCGGAAACATGGCGAGAAAAAGTGGAAGTGTGAGAAATGCGCCAAGAGATATGCAGTCCAATCTGACTGGAAGGCTCATTCCAAGACTTGTGGGACTAGAGAATATAGATGCGACTGTGGTACAATTTTCTCCAGGAGAGACAGCTTCATTACACATAGAGCGTTCTGTGACGCTTTAGCAGAAGAAACCGCTAGGCTAAACGCAGCCTCGCATCTCAAAAGCTTTGCCGCAACCGCTGGTAGTAATCTAAACTATCATTATCTCATGGGGACACTTATCCCATCACCATCACTACCACAACCACCGTCGTTTCCGTTCGGACCACCGCAACCGCAACATCATCACCACCACCAATTCCCAATCACAACCAACAACTTCGATCATCAAGACGTCATGAAACCAGCGTCTACGCTCTCTTTATGGTCGGGAGGAAATATTAATCATCATCAGCAAGTGACCATCGAGGACCGTATGGCGCCGCAGCCGCATTCACCGCAAGAGGATTACAATTGGGTTTTCGGAAACGCGAATAATCACGGCGAGTTAATAACGACGAGCGATTCACTCATTACTCATGACAATAATATTAATATCGTCCAGAGTAAGGAAAACGCTAACGGGGCAACTTCTCTTTCCGTGCCTTCTCTTTTTAGCAGCGTTGACCAAATTACCCAAGACGCAAACGCTGCTTCTGTGGCTGTTGCAAATATGTCGGCGACTGCGTTACTCCAAAAAGCTGCTCAGATGGGAGCGACTTCTTCTACGTCACCAACGACGACGATTACTACCGACCAATCAGCGTATCTTCAGAGTTTTGCATCGAAGAGTAATCAGATTGTAGAAGATGGTGGCAGCGACAGGTTCTTTGCTTCGTTTGGATCGAACAGTGTCGAGTTAATGAGTAATAATAATAACGGTCTTCACGAGATCGGGAACCCTAGAAACGGCGTTACGGTCGTTTCGGGGATGGGTGAATTACAGAATTACCCTTGGAAGCGTAGAAGAGTTGATATTGGGAATGCGGGAGGAGGAGGGCAAACTCGGGATTTTCTTGGGGTTGGTGTACAAACAATATGCCATTCTTCCTCTATCAATGGATGGATTTGAAACACTCTTTAATGGATTTTTCTACCTTATTTATGAGTGAACTTAATTATCAAAGCTGATTTCTTTAATTAATTT
CDS Sequence
- >AT1G03840.2
ATGACAACTGAAGATCAGACAATTTCAAGTAGTGGAGGATATGTCCAAAGCTCATCAACAACTGATCATGTTGATCATCATCATCATGATCAACATGAATCCCTCAATCCTCCTCTTGTCAAGAAGAAGAGAAACCTCCCTGGAAATCCTGAAGCTGAGGTCATAGCTCTATCTCCAAAGACACTTATGGCCACAAATCGTTTCCTCTGCGAGATATGTGGAAAAGGGTTTCAAAGAGACCAGAATCTACAGCTTCACCGTCGAGGACACAACCTCCCATGGAAGCTAAAGCAGAGGACGAGCAAAGAAGTAAGGAAACGAGTGTATGTATGTCCAGAAAAGAGTTGCGTCCACCACCATCCGACGAGGGCACTTGGTGATCTTACCGGCATTAAGAAACATTTTTGTCGGAAACATGGCGAGAAAAAGTGGAAGTGTGAGAAATGCGCCAAGAGATATGCAGTCCAATCTGACTGGAAGGCTCATTCCAAGACTTGTGGGACTAGAGAATATAGATGCGACTGTGGTACAATTTTCTCCAGGAGAGACAGCTTCATTACACATAGAGCGTTCTGTGACGCTTTAGCAGAAGAAACCGCTAGGCTAAACGCAGCCTCGCATCTCAAAAGCTTTGCCGCAACCGCTGGTAGTAATCTAAACTATCATTATCTCATGGGGACACTTATCCCATCACCATCACTACCACAACCACCGTCGTTTCCGTTCGGACCACCGCAACCGCAACATCATCACCACCACCAATTCCCAATCACAACCAACAACTTCGATCATCAAGACGTCATGAAACCAGCGTCTACGCTCTCTTTATGGTCGGGAGGAAATATTAATCATCATCAGCAAGTGACCATCGAGGACCGTATGGCGCCGCAGCCGCATTCACCGCAAGAGGATTACAATTGGGTTTTCGGAAACGCGAATAATCACGGCGAGTTAATAACGACGAGCGATTCACTCATTACTCATGACAATAATATTAATATCGTCCAGAGTAAGGAAAACGCTAACGGGGCAACTTCTCTTTCCGTGCCTTCTCTTTTTAGCAGCGTTGACCAAATTACCCAAGACGCAAACGCTGCTTCTGTGGCTGTTGCAAATATGTCGGCGACTGCGTTACTCCAAAAAGCTGCTCAGATGGGAGCGACTTCTTCTACGTCACCAACGACGACGATTACTACCGACCAATCAGCGTATCTTCAGAGTTTTGCATCGAAGAGTAATCAGATTGTAGAAGATGGTGGCAGCGACAGGTTCTTTGCTTCGTTTGGATCGAACAGTGTCGAGTTAATGAGTAATAATAATAACGGTCTTCACGAGATCGGGAACCCTAGAAACGGCGTTACGGTCGTTTCGGGGATGGGTGAATTACAGAATTACCCTTGGAAGCGTAGAAGAGTTGATATTGGGAATGCGGGAGGAGGAGGGCAAACTCGGGATTTTCTTGGGGTTGGTGTACAAACAATATGCCATTCTTCCTCTATCAATGGATGGATTTGA - >AT1G03840.1
ATGACAACTGAAGATCAGACAATTTCAAGTAGTGGAGGATATGTCCAAAGCTCATCAACAACTGATCATGTTGATCATCATCATCATGATCAACATGAATCCCTCAATCCTCCTCTTGTCAAGAAGAAGAGAAACCTCCCTGGAAATCCTGAAGCTGAGGTCATAGCTCTATCTCCAAAGACACTTATGGCCACAAATCGTTTCCTCTGCGAGATATGTGGAAAAGGGTTTCAAAGAGACCAGAATCTACAGCTTCACCGTCGAGGACACAACCTCCCATGGAAGCTAAAGCAGAGGACGAGCAAAGAAGTAAGGAAACGAGTGTATGTATGTCCAGAAAAGAGTTGCGTCCACCACCATCCGACGAGGGCACTTGGTGATCTTACCGGCATTAAGAAACATTTTTGTCGGAAACATGGCGAGAAAAAGTGGAAGTGTGAGAAATGCGCCAAGAGATATGCAGTCCAATCTGACTGGAAGGCTCATTCCAAGACTTGTGGGACTAGAGAATATAGATGCGACTGTGGTACAATTTTCTCCAGGAGAGACAGCTTCATTACACATAGAGCGTTCTGTGACGCTTTAGCAGAAGAAACCGCTAGGCTAAACGCAGCCTCGCATCTCAAAAGCTTTGCCGCAACCGCTGGTAGTAATCTAAACTATCATTATCTCATGGGGACACTTATCCCATCACCATCACTACCACAACCACCGTCGTTTCCGTTCGGACCACCGCAACCGCAACATCATCACCACCACCAATTCCCAATCACAACCAACAACTTCGATCATCAAGACGTCATGAAACCAGCGTCTACGCTCTCTTTATGGTCGGGAGGAAATATTAATCATCATCAGCAAGTGACCATCGAGGACCGTATGGCGCCGCAGCCGCATTCACCGCAAGAGGATTACAATTGGGTTTTCGGAAACGCGAATAATCACGGCGAGTTAATAACGACGAGCGATTCACTCATTACTCATGACAATAATATTAATATCGTCCAGAGTAAGGAAAACGCTAACGGGGCAACTTCTCTTTCCGTGCCTTCTCTTTTTAGCAGCGTTGACCAAATTACCCAAGACGCAAACGCTGCTTCTGTGGCTGTTGCAAATATGTCGGCGACTGCGTTACTCCAAAAAGCTGCTCAGATGGGAGCGACTTCTTCTACGTCACCAACGACGACGATTACTACCGACCAATCAGCGTATCTTCAGAGTTTTGCATCGAAGAGTAATCAGATTGTAGAAGATGGTGGCAGCGACAGGTTCTTTGCTTCGTTTGGATCGAACAGTGTCGAGTTAATGAGTAATAATAATAACGGTCTTCACGAGATCGGGAACCCTAGAAACGGCGTTACGGTCGTTTCGGGGATGGGTGAATTACAGAATTACCCTTGGAAGCGTAGAAGAGTTGATATTGGGAATGCGGGAGGAGGAGGGCAAACTCGGGATTTTCTTGGGGTTGGTGTACAAACAATATGCCATTCTTCCTCTATCAATGGATGGATTTGA
Protein Sequence
- >AT1G03840.2
MTTEDQTISSSGGYVQSSSTTDHVDHHHHDQHESLNPPLVKKKRNLPGNPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKSCVHHHPTRALGDLTGIKKHFCRKHGEKKWKCEKCAKRYAVQSDWKAHSKTCGTREYRCDCGTIFSRRDSFITHRAFCDALAEETARLNAASHLKSFAATAGSNLNYHYLMGTLIPSPSLPQPPSFPFGPPQPQHHHHHQFPITTNNFDHQDVMKPASTLSLWSGGNINHHQQVTIEDRMAPQPHSPQEDYNWVFGNANNHGELITTSDSLITHDNNINIVQSKENANGATSLSVPSLFSSVDQITQDANAASVAVANMSATALLQKAAQMGATSSTSPTTTITTDQSAYLQSFASKSNQIVEDGGSDRFFASFGSNSVELMSNNNNGLHEIGNPRNGVTVVSGMGELQNYPWKRRRVDIGNAGGGGQTRDFLGVGVQTICHSSSINGWI - >AT1G03840.1
MTTEDQTISSSGGYVQSSSTTDHVDHHHHDQHESLNPPLVKKKRNLPGNPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKSCVHHHPTRALGDLTGIKKHFCRKHGEKKWKCEKCAKRYAVQSDWKAHSKTCGTREYRCDCGTIFSRRDSFITHRAFCDALAEETARLNAASHLKSFAATAGSNLNYHYLMGTLIPSPSLPQPPSFPFGPPQPQHHHHHQFPITTNNFDHQDVMKPASTLSLWSGGNINHHQQVTIEDRMAPQPHSPQEDYNWVFGNANNHGELITTSDSLITHDNNINIVQSKENANGATSLSVPSLFSSVDQITQDANAASVAVANMSATALLQKAAQMGATSSTSPTTTITTDQSAYLQSFASKSNQIVEDGGSDRFFASFGSNSVELMSNNNNGLHEIGNPRNGVTVVSGMGELQNYPWKRRRVDIGNAGGGGQTRDFLGVGVQTICHSSSINGWI