Gene Details:

  • Gene ID: AT1G03790
  • Gene Symbol: AtC3H2, AtTZF4, SOM, TZF4
  • Gene Name: SOMNUS, Tandem CCCH Zinc Finger protein 4
  • Description: Zinc finger C-x8-C-x5-C-x3-H type family protein;(source:Araport11)
  • TAIR Accession:
  • Genome: Araport11_genome_release
  • Species: Arabidopsis thaliana

Transcripts:

Plant Ontology Annotations:

  • PO:0009030  — carpel — carpelo (Spanish, exact), 心皮 (Japanese, exact), Poaceae carpel (narrow), Zea carpel (narrow), pistil (broad)
  • PO:0009001  — fruit — frucht (exact, German), fruto (exact, Spanish), 果実 (exact, Japanese), coenocarp (narrow), syncarp (narrow), aggregate fruit (broad), compound fruit (broad), dehiscent fruit (broad), diaspore (broad), indehiscent fruit (broad), multiple fruit (broad), propagule (broad)
  • PO:0009010  — seed — semilla (Spanish, exact), 種子 (Japanese, exact), pyrene (narrow), diaspore (broad)

Germplasm Phenotype:

  • SALK_090314C  — Wild-type seeds germinate when PHYB is activated by red light but not when PHYB is inactivated by far-red light. som mutant seeds germinate at rates of almost 100% irrespective of light conditions.
  • som-1  — Wild-type seeds germinate when PHYB is activated by red light but not when PHYB is inactivated by far-red light. som mutant seeds germinate at rates of almost 100% irrespective of light conditions.
  • som-3  — Wild-type seeds germinate when PHYB is activated by red light but not when PHYB is inactivated by far-red light. som mutant seeds germinate at rates of almost 100% irrespective of light conditions.

Literature:

Sequences:

cDNA Sequence
  • >AT1G03790.1
    ATGAAACCTCTCTAAAACTCTTCTCTTATCTCGCCACGAACCCTCTCCCCATACCCTTCACACGACTCCTTCCACTTTTTAATCTCTTGTCTTCTTATTACATCTCATCAAAATTCTATTTAATGATAATAATCCAAAGCTAACAATATTTAAATATACGTTTTAACTTATTCTCATGTCTATATCTATACTCAATCCACATATATATAAACCACAATATCCCATCTTTCATCTTACACAAATCCCTCAAAACCAAAACACATCACAAACAAAAAAAACAAGTTAGATATTATATCATCATGGATGTCGTTTGTACGGAACATCAAATGAGGAAGCCAACGGTGGAGATTCCTCCGAGAAAGCTTCTTTTATCTTCCAAGAGTTTTCCTTCTGATTCTTCTTCCCCTCGCTCGCCGCGTAAACATAACTGGAACAAAAGCAACAAGATTACATCTGAACATGAAGAAGACAACGAAGACAACAACAGAGAGAATAAAGAGTACTGTTATGATTCTGACTCTGATGATCCTTACGCAAGTGATCATTTCCGGATGTTCGAATTCAAGATCCGTCGTTGCACTCGTAGCCGAAGCCACGATTGGACTGATTGTCCTTTTGCTCATCCCGGTGAGAAAGCTCGCCGTCGTGACCCTCGTCGCTTTCAATACTCCGGTGAGGTTTGTCCCGAGTTTCGTCGTGGTGGTGATTGTAGCCGTGGAGATGATTGTGAGTTTGCTCATGGAGTCTTCGAGTGTTGGCTCCATCCTATTCGTTACCGTACTGAAGCTTGTAAAGACGGTAAACACTGTAAAAGGAAAGTCTGTTTCTTTGCTCATTCGCCACGTCAGCTTAGGGTTCTTCCTCCGGAGAACGTTTCCGGTGTCTCAGCGTCGCCTTCTCCTGCGGCGAAGAATCCATGTTGCTTGTTTTGTAGCAGCTCTCCCACGAGCACTCTTTTGGGTAATTTGTCTCATCTTTCTCGATCTCCGTCTCTGTCTCCACCTATGTCTCCGGCTAATAAAGCCGCTGCTTTTTCACGGTTGAGGAACCGCGCCGCTTCTGCCGTTTCCGCCGCTGCAGCCGCTGGTTCAATGAACTATAAAGACGTTTTGAGCGAGCTTGTGAATTCTTTGGATTCCATGAGCTTAGCGGAAGCGCTGCAGGCGAGTTCCTCGTCGCCCGTTACAACTCCGGTTTCCGCTGCGGCTGCCGCGTTTGCGTCGTCCTGCGGTCTGAGCAATCAGCGTCTCCATCTCCAGCAACAACAACCAAGTAGCCCTTTGCAATTTGCTCTTTCGCCTTCCACTCCAAGTTACCTAACTAACTCACCTCAGGCGAACTTCTTCAGTGATGATTTCACTCCTCGCCGGAGACAGATGAACGATTTCACGGCGATGACGGCCGTTAGGGAGAATACTAACATTGAGGATGGTTCTTGTGGTGACCCTGATCTAGGATGGGTCAATGATCTCTTGACTTGAGGGATTGACGGTGGAGATTCGCCGGGAGGAGATCTGACTTGAGAATGTAAATTTCGGTGGAAGAATTTTAATCACATTCATGAATCATGGGAGAATAATCGGTTCGTAACGGTTTGGTCAATGCATGGAGAGATTGTTTGTTCAAATTTATTTTGAAGATTTTTTTTTTTAGCTAATTCAGAAGTGTCTTGTGTATTGTCGTTTATTTTTTAGAATTTTCTTTTTCTGATGGGATTTTTACCAAATAATATGTTGAACTTGTAATATCTTGTGGACTCGGATTGTGCAATGTTTCACCAATTCTATAGATATTTTTCCCTTTTCATGTATACTTTGTTAAATCTTTAATAGATCAATTTGAACATTACAACCTC
CDS Sequence
  • >AT1G03790.1
    ATGGATGTCGTTTGTACGGAACATCAAATGAGGAAGCCAACGGTGGAGATTCCTCCGAGAAAGCTTCTTTTATCTTCCAAGAGTTTTCCTTCTGATTCTTCTTCCCCTCGCTCGCCGCGTAAACATAACTGGAACAAAAGCAACAAGATTACATCTGAACATGAAGAAGACAACGAAGACAACAACAGAGAGAATAAAGAGTACTGTTATGATTCTGACTCTGATGATCCTTACGCAAGTGATCATTTCCGGATGTTCGAATTCAAGATCCGTCGTTGCACTCGTAGCCGAAGCCACGATTGGACTGATTGTCCTTTTGCTCATCCCGGTGAGAAAGCTCGCCGTCGTGACCCTCGTCGCTTTCAATACTCCGGTGAGGTTTGTCCCGAGTTTCGTCGTGGTGGTGATTGTAGCCGTGGAGATGATTGTGAGTTTGCTCATGGAGTCTTCGAGTGTTGGCTCCATCCTATTCGTTACCGTACTGAAGCTTGTAAAGACGGTAAACACTGTAAAAGGAAAGTCTGTTTCTTTGCTCATTCGCCACGTCAGCTTAGGGTTCTTCCTCCGGAGAACGTTTCCGGTGTCTCAGCGTCGCCTTCTCCTGCGGCGAAGAATCCATGTTGCTTGTTTTGTAGCAGCTCTCCCACGAGCACTCTTTTGGGTAATTTGTCTCATCTTTCTCGATCTCCGTCTCTGTCTCCACCTATGTCTCCGGCTAATAAAGCCGCTGCTTTTTCACGGTTGAGGAACCGCGCCGCTTCTGCCGTTTCCGCCGCTGCAGCCGCTGGTTCAATGAACTATAAAGACGTTTTGAGCGAGCTTGTGAATTCTTTGGATTCCATGAGCTTAGCGGAAGCGCTGCAGGCGAGTTCCTCGTCGCCCGTTACAACTCCGGTTTCCGCTGCGGCTGCCGCGTTTGCGTCGTCCTGCGGTCTGAGCAATCAGCGTCTCCATCTCCAGCAACAACAACCAAGTAGCCCTTTGCAATTTGCTCTTTCGCCTTCCACTCCAAGTTACCTAACTAACTCACCTCAGGCGAACTTCTTCAGTGATGATTTCACTCCTCGCCGGAGACAGATGAACGATTTCACGGCGATGACGGCCGTTAGGGAGAATACTAACATTGAGGATGGTTCTTGTGGTGACCCTGATCTAGGATGGGTCAATGATCTCTTGACTTGA
Protein Sequence
  • >AT1G03790.1
    MDVVCTEHQMRKPTVEIPPRKLLLSSKSFPSDSSSPRSPRKHNWNKSNKITSEHEEDNEDNNRENKEYCYDSDSDDPYASDHFRMFEFKIRRCTRSRSHDWTDCPFAHPGEKARRRDPRRFQYSGEVCPEFRRGGDCSRGDDCEFAHGVFECWLHPIRYRTEACKDGKHCKRKVCFFAHSPRQLRVLPPENVSGVSASPSPAAKNPCCLFCSSSPTSTLLGNLSHLSRSPSLSPPMSPANKAAAFSRLRNRAASAVSAAAAAGSMNYKDVLSELVNSLDSMSLAEALQASSSSPVTTPVSAAAAAFASSCGLSNQRLHLQQQQPSSPLQFALSPSTPSYLTNSPQANFFSDDFTPRRRQMNDFTAMTAVRENTNIEDGSCGDPDLGWVNDLLT