Information report for AT1G03790
Gene Details
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Functional Descriptions
- PO:0009030 — carpel — carpelo (Spanish, exact), 心皮 (Japanese, exact), Poaceae carpel (narrow), Zea carpel (narrow), pistil (broad)
- PO:0009001 — fruit — frucht (exact, German), fruto (exact, Spanish), 果実 (exact, Japanese), coenocarp (narrow), syncarp (narrow), aggregate fruit (broad), compound fruit (broad), dehiscent fruit (broad), diaspore (broad), indehiscent fruit (broad), multiple fruit (broad), propagule (broad)
- PO:0009010 — seed — semilla (Spanish, exact), 種子 (Japanese, exact), pyrene (narrow), diaspore (broad)
- SALK_090314C — Wild-type seeds germinate when PHYB is activated by red light but not when PHYB is inactivated by far-red light. som mutant seeds germinate at rates of almost 100% irrespective of light conditions.
- som-1 — Wild-type seeds germinate when PHYB is activated by red light but not when PHYB is inactivated by far-red light. som mutant seeds germinate at rates of almost 100% irrespective of light conditions.
- som-3 — Wild-type seeds germinate when PHYB is activated by red light but not when PHYB is inactivated by far-red light. som mutant seeds germinate at rates of almost 100% irrespective of light conditions.
Literature and News
- Duplication and divergence: New insights into AXR1 and AXL functions in DNA repair and meiosis. DOI: 10.1038/s41598-020-65734-2 ; PMID: 32483285
- and AUX1-Mediated Auxin Transport. DOI: 10.3389/fpls.2020.00671 ; PMID: 32582237
- AXR1 affects DNA methylation independently of its role in regulating meiotic crossover localization. DOI: 10.1371/journal.pgen.1008894 ; PMID: 32598340
- The growth of Arabidopsis primary root is repressed by several and diverse amino acids through auxin-dependent and independent mechanisms and MPK6 kinase activity. DOI: 10.1016/j.plantsci.2020.110717 ; PMID: 33288023
- Insights into the Transcriptional Regulation of Branching Hormonal Signaling Pathways Genes under Drought Stress in Arabidopsis. DOI: 10.3390/genes12020298 ; PMID: 33672598
- Nitric Oxide Alters the Pattern of Auxin Maxima and PIN-FORMED1 During Shoot Development. DOI: 10.3389/fpls.2021.630792 ; PMID: 34122465
- Comparative analysis of bacterial-origin genes for plant mitochondrial ribosomal proteins. DOI: 10.1093/molbev/msj080 ; PMID: 16368778
- New approaches for the analysis of Arabidopsis thaliana small RNAs. DOI: 10.1016/j.biochi.2007.04.011 ; PMID: 17562352
- The Pentatricopeptide Repeat Protein EMB2654 Is Essential for Trans-Splicing of a Chloroplast Small Ribosomal Subunit Transcript. DOI: 10.1104/pp.16.01840 ; PMID: 28011633
- CHLOROPLAST RIBOSOME ASSOCIATED Supports Translation under Stress and Interacts with the Ribosomal 30S Subunit. DOI: 10.1104/pp.18.00602 ; PMID: 29914890
- Involvement of Target of Rapamycin (TOR) Signaling in the Regulation of Crosstalk between Ribosomal Protein Small Subunit 6 Kinase-1 (RPS6K-1) and Ribosomal Proteins. DOI: 10.3390/plants12010176 ; PMID: 36616305
- The identity of plant glutamate receptors. DOI: 10.1126/science.292.5521.1486b ; PMID: 11379626
- AtGLR3.4, a glutamate receptor channel-like gene is sensitive to touch and cold. DOI: 10.1007/s00425-005-1551-3 ; PMID: 15864638
- Glutamate receptor subtypes evidenced by differences in desensitization and dependence on the GLR3.3 and GLR3.4 genes. DOI: 10.1104/pp.107.108134 ; PMID: 18162597
- Dual localization of plant glutamate receptor AtGLR3.4 to plastids and plasmamembrane. DOI: 10.1016/j.bbabio.2010.11.008 ; PMID: 21110940
- Ca(2+) conduction by an amino acid-gated ion channel related to glutamate receptors. DOI: 10.1104/pp.112.197509 ; PMID: 22447719
- Interacting glutamate receptor-like proteins in Phloem regulate lateral root initiation in Arabidopsis. DOI: 10.1105/tpc.113.110668 ; PMID: 23590882
- A plant homolog of animal glutamate receptors is an ion channel gated by multiple hydrophobic amino acids. DOI: 10.1126/scisignal.2003762 ; PMID: 23757024
- Glutamate Receptor Homolog3.4 is Involved in Regulation of Seed Germination Under Salt Stress in Arabidopsis. DOI: 10.1093/pcp/pcy034 ; PMID: 29432559
- Structure of the Arabidopsis thaliana glutamate receptor-like channel GLR3.4. DOI: 10.1016/j.molcel.2021.05.025 ; PMID: 34161757
- START lipid/sterol-binding domains are amplified in plants and are predominantly associated with homeodomain transcription factors. DOI: 10.1186/gb-2004-5-6-r41 ; PMID: 15186492
- Characterization of the class IV homeodomain-Leucine Zipper gene family in Arabidopsis. DOI: 10.1104/pp.106.077388 ; PMID: 16778018
- Arabidopsis homeodomain-leucine zipper IV proteins promote stomatal development and ectopically induce stomata beyond the epidermis. DOI: 10.1242/dev.090209 ; PMID: 23515473
Gene Resources
- UniProt: A0A178W4T9
- EMBL: CACRSJ010000104, LUHQ01000001
- AlphaFoldDB: A0A178W4T9
- EnsemblPlants: AT1G03790.1
- Gramene: AT1G03790.1
- KEGG: ath:AT1G03790
- Orthologous matrix: AKNPCCL
- ExpressionAtlas: AT1G03790
- InterPro: IPR000571, IPR036855, IPR045234
- PANTHER: PTHR14493, PTHR14493:SF90
- SUPFAM: SSF90229
- PROSITE: PS50103
- Gene3D: 3.30.1370.210
Homologs
- Brassica napus GSBRNA2T00150332001, GSBRNA2T00089642001, GSBRNA2T00002710001, GSBRNA2T00145340001
- Brassica oleracea XP_013603326.1, XP_013584552.1
- Brassica rapa XP_009119364.1, XP_009111142.1
- Raphanus raphanistrum RrC211_p3, RrC3747_p3
Sequences
cDNA Sequence
- >AT1G03790.1
ATGAAACCTCTCTAAAACTCTTCTCTTATCTCGCCACGAACCCTCTCCCCATACCCTTCACACGACTCCTTCCACTTTTTAATCTCTTGTCTTCTTATTACATCTCATCAAAATTCTATTTAATGATAATAATCCAAAGCTAACAATATTTAAATATACGTTTTAACTTATTCTCATGTCTATATCTATACTCAATCCACATATATATAAACCACAATATCCCATCTTTCATCTTACACAAATCCCTCAAAACCAAAACACATCACAAACAAAAAAAACAAGTTAGATATTATATCATCATGGATGTCGTTTGTACGGAACATCAAATGAGGAAGCCAACGGTGGAGATTCCTCCGAGAAAGCTTCTTTTATCTTCCAAGAGTTTTCCTTCTGATTCTTCTTCCCCTCGCTCGCCGCGTAAACATAACTGGAACAAAAGCAACAAGATTACATCTGAACATGAAGAAGACAACGAAGACAACAACAGAGAGAATAAAGAGTACTGTTATGATTCTGACTCTGATGATCCTTACGCAAGTGATCATTTCCGGATGTTCGAATTCAAGATCCGTCGTTGCACTCGTAGCCGAAGCCACGATTGGACTGATTGTCCTTTTGCTCATCCCGGTGAGAAAGCTCGCCGTCGTGACCCTCGTCGCTTTCAATACTCCGGTGAGGTTTGTCCCGAGTTTCGTCGTGGTGGTGATTGTAGCCGTGGAGATGATTGTGAGTTTGCTCATGGAGTCTTCGAGTGTTGGCTCCATCCTATTCGTTACCGTACTGAAGCTTGTAAAGACGGTAAACACTGTAAAAGGAAAGTCTGTTTCTTTGCTCATTCGCCACGTCAGCTTAGGGTTCTTCCTCCGGAGAACGTTTCCGGTGTCTCAGCGTCGCCTTCTCCTGCGGCGAAGAATCCATGTTGCTTGTTTTGTAGCAGCTCTCCCACGAGCACTCTTTTGGGTAATTTGTCTCATCTTTCTCGATCTCCGTCTCTGTCTCCACCTATGTCTCCGGCTAATAAAGCCGCTGCTTTTTCACGGTTGAGGAACCGCGCCGCTTCTGCCGTTTCCGCCGCTGCAGCCGCTGGTTCAATGAACTATAAAGACGTTTTGAGCGAGCTTGTGAATTCTTTGGATTCCATGAGCTTAGCGGAAGCGCTGCAGGCGAGTTCCTCGTCGCCCGTTACAACTCCGGTTTCCGCTGCGGCTGCCGCGTTTGCGTCGTCCTGCGGTCTGAGCAATCAGCGTCTCCATCTCCAGCAACAACAACCAAGTAGCCCTTTGCAATTTGCTCTTTCGCCTTCCACTCCAAGTTACCTAACTAACTCACCTCAGGCGAACTTCTTCAGTGATGATTTCACTCCTCGCCGGAGACAGATGAACGATTTCACGGCGATGACGGCCGTTAGGGAGAATACTAACATTGAGGATGGTTCTTGTGGTGACCCTGATCTAGGATGGGTCAATGATCTCTTGACTTGAGGGATTGACGGTGGAGATTCGCCGGGAGGAGATCTGACTTGAGAATGTAAATTTCGGTGGAAGAATTTTAATCACATTCATGAATCATGGGAGAATAATCGGTTCGTAACGGTTTGGTCAATGCATGGAGAGATTGTTTGTTCAAATTTATTTTGAAGATTTTTTTTTTTAGCTAATTCAGAAGTGTCTTGTGTATTGTCGTTTATTTTTTAGAATTTTCTTTTTCTGATGGGATTTTTACCAAATAATATGTTGAACTTGTAATATCTTGTGGACTCGGATTGTGCAATGTTTCACCAATTCTATAGATATTTTTCCCTTTTCATGTATACTTTGTTAAATCTTTAATAGATCAATTTGAACATTACAACCTC
CDS Sequence
- >AT1G03790.1
ATGGATGTCGTTTGTACGGAACATCAAATGAGGAAGCCAACGGTGGAGATTCCTCCGAGAAAGCTTCTTTTATCTTCCAAGAGTTTTCCTTCTGATTCTTCTTCCCCTCGCTCGCCGCGTAAACATAACTGGAACAAAAGCAACAAGATTACATCTGAACATGAAGAAGACAACGAAGACAACAACAGAGAGAATAAAGAGTACTGTTATGATTCTGACTCTGATGATCCTTACGCAAGTGATCATTTCCGGATGTTCGAATTCAAGATCCGTCGTTGCACTCGTAGCCGAAGCCACGATTGGACTGATTGTCCTTTTGCTCATCCCGGTGAGAAAGCTCGCCGTCGTGACCCTCGTCGCTTTCAATACTCCGGTGAGGTTTGTCCCGAGTTTCGTCGTGGTGGTGATTGTAGCCGTGGAGATGATTGTGAGTTTGCTCATGGAGTCTTCGAGTGTTGGCTCCATCCTATTCGTTACCGTACTGAAGCTTGTAAAGACGGTAAACACTGTAAAAGGAAAGTCTGTTTCTTTGCTCATTCGCCACGTCAGCTTAGGGTTCTTCCTCCGGAGAACGTTTCCGGTGTCTCAGCGTCGCCTTCTCCTGCGGCGAAGAATCCATGTTGCTTGTTTTGTAGCAGCTCTCCCACGAGCACTCTTTTGGGTAATTTGTCTCATCTTTCTCGATCTCCGTCTCTGTCTCCACCTATGTCTCCGGCTAATAAAGCCGCTGCTTTTTCACGGTTGAGGAACCGCGCCGCTTCTGCCGTTTCCGCCGCTGCAGCCGCTGGTTCAATGAACTATAAAGACGTTTTGAGCGAGCTTGTGAATTCTTTGGATTCCATGAGCTTAGCGGAAGCGCTGCAGGCGAGTTCCTCGTCGCCCGTTACAACTCCGGTTTCCGCTGCGGCTGCCGCGTTTGCGTCGTCCTGCGGTCTGAGCAATCAGCGTCTCCATCTCCAGCAACAACAACCAAGTAGCCCTTTGCAATTTGCTCTTTCGCCTTCCACTCCAAGTTACCTAACTAACTCACCTCAGGCGAACTTCTTCAGTGATGATTTCACTCCTCGCCGGAGACAGATGAACGATTTCACGGCGATGACGGCCGTTAGGGAGAATACTAACATTGAGGATGGTTCTTGTGGTGACCCTGATCTAGGATGGGTCAATGATCTCTTGACTTGA
Protein Sequence
- >AT1G03790.1
MDVVCTEHQMRKPTVEIPPRKLLLSSKSFPSDSSSPRSPRKHNWNKSNKITSEHEEDNEDNNRENKEYCYDSDSDDPYASDHFRMFEFKIRRCTRSRSHDWTDCPFAHPGEKARRRDPRRFQYSGEVCPEFRRGGDCSRGDDCEFAHGVFECWLHPIRYRTEACKDGKHCKRKVCFFAHSPRQLRVLPPENVSGVSASPSPAAKNPCCLFCSSSPTSTLLGNLSHLSRSPSLSPPMSPANKAAAFSRLRNRAASAVSAAAAAGSMNYKDVLSELVNSLDSMSLAEALQASSSSPVTTPVSAAAAAFASSCGLSNQRLHLQQQQPSSPLQFALSPSTPSYLTNSPQANFFSDDFTPRRRQMNDFTAMTAVRENTNIEDGSCGDPDLGWVNDLLT