Information report for AT1G03600
Gene Details
|
|
Functional Descriptions
- PO:0000013 — cauline leaf — hoja caulinar (Spanish, exact), 茎生葉、茎葉 (Japanese, exact)
- PO:0000230 — inflorescence meristem — meristema de la inflorescencia (Spanish, exact), 花序分裂組織 (Japanese, exact)
- PO:0009010 — seed — semilla (Spanish, exact), 種子 (Japanese, exact), pyrene (narrow), diaspore (broad)
- PO:0009030 — carpel — carpelo (Spanish, exact), 心皮 (Japanese, exact), Poaceae carpel (narrow), Zea carpel (narrow), pistil (broad)
- PO:0009032 — petal — pétalo (Spanish, exact), 花弁 (Japanese, exact)
- PO:0009047 — stem — caña (Spanish, exact), culm (exact), eje primario (Spanish, exact), primary axis (exact), primary stem (exact), tallo (Spanish, exact), tronco (Spanish, exact), 茎 (Japanese, exact), bole (narrow), cane (narrow), caudex (narrow), caudices (narrow), core (narrow), primocane (narrow), scape (narrow), stalk (narrow), trunk (narrow)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
- PO:0000293 — guard cell — célula guardiana (Spanish, exact), occlusive cell (exact), 孔辺細胞 (Japanese, exact)
- GO:0009543 — is active in — chloroplast thylakoid lumen
- GO:0009523 — part of — photosystem II
- GO:0009534 — located in — chloroplast thylakoid
- GO:0071484 — acts upstream of or within — cellular response to light intensity
- GO:0009535 — located in — chloroplast thylakoid membrane
- GO:0009543 — located in — chloroplast thylakoid lumen
- GO:0009507 — located in — chloroplast
- GO:0010207 — involved in — photosystem II assembly
- GO:0009579 — located in — thylakoid
- GO:0010206 — acts upstream of or within — photosystem II repair
- GO:0005576 — located in — extracellular region
- SALK_004769C — Defective in response to changing light intensity.Retarded growth under greenhouse conditions, and produces less anthocyanin under high light.
Functional Keywords
- cauline leaf , inflorescence meristem , seed , carpel , petal , stem , pollen , guard cell
Literature and News
- Arabidopsis LBP/BPI related-1 and -2 bind to LPS directly and regulate PR1 expression. DOI: 10.1038/srep27527 ; PMID: 27273538
- Data-mining bioinformatics: suggesting Arabidopsis thaliana L-type lectin receptor kinase IX.2 (LecRK-IX.2) modulate metabolites and abiotic stress responses. DOI: 10.1080/15592324.2020.1818031 ; PMID: 32924779
- Identification of MAMP-Responsive Plasma Membrane-Associated Proteins in Arabidopsis thaliana Following Challenge with Different LPS Chemotypes from Xanthomonas campestris. DOI: 10.3390/pathogens9100787 ; PMID: 32992883
- Phylogenetic analyses identify 10 classes of the protein disulfide isomerase family in plants, including single-domain protein disulfide isomerase-related proteins. DOI: 10.1104/pp.104.056507 ; PMID: 15684019
- Endoplasmic reticulum stress activates the expression of a sub-group of protein disulfide isomerase genes and AtbZIP60 modulates the response in Arabidopsis thaliana. DOI: 10.1007/s00438-008-0356-z ; PMID: 18574595
- Protein disulfide isomerase-2 of Arabidopsis mediates protein folding and localizes to both the secretory pathway and nucleus, where it interacts with maternal effect embryo arrest factor. DOI: 10.1007/s10059-011-0150-3 ; PMID: 21909944
- Phylogenetic characterization and promoter expression analysis of a novel hybrid protein disulfide isomerase/cargo receptor subfamily unique to plants and chromalveolates. DOI: 10.1007/s00438-015-1106-7 ; PMID: 26300531
- A Non-Classical Member of the Protein Disulfide Isomerase Family, PDI7 of Arabidopsis thaliana, Localizes to the cis-Golgi and Endoplasmic Reticulum Membranes. DOI: 10.1093/pcp/pcx057 ; PMID: 28444333
- Plant-specific ribosome biogenesis factors in Arabidopsis thaliana with essential function in rRNA processing. DOI: 10.1093/nar/gky1261 ; PMID: 30576513
- Genetic buffering of cyclic AMP in Arabidopsis thaliana compromises the plant immune response triggered by an avirulent strain of Pseudomonas syringae pv. tomato. DOI: 10.1111/tpj.14275 ; PMID: 30735606
- The Arabidopsis Protein Disulfide Isomerase Subfamily M Isoform, PDI9, Localizes to the Endoplasmic Reticulum and Influences Pollen Viability and Proper Formation of the Pollen Exine During Heat Stress. DOI: 10.3389/fpls.2020.610052 ; PMID: 33447253
- Expression Characterization of AtPDI11 and Functional Analysis of AtPDI11 D Domain in Oxidative Protein Folding. DOI: 10.3390/ijms23031409 ; PMID: 35163331
- Calmodulin interacts with and regulates the RNA-binding activity of an Arabidopsis polyadenylation factor subunit. DOI: 10.1104/pp.105.070672 ; PMID: 16500995
- The complement of protein phosphatase catalytic subunits encoded in the genome of Arabidopsis. DOI: 10.1104/pp.004002 ; PMID: 12068129
- Evolutionary radiation pattern of novel protein phosphatases revealed by analysis of protein data from the completely sequenced genomes of humans, green algae, and higher plants. DOI: 10.1104/pp.107.111393 ; PMID: 18156295
- Phylogenetic and genetic linkage between novel atypical dual-specificity phosphatases from non-metazoan organisms. DOI: 10.1007/s00438-011-0611-6 ; PMID: 21409566
- Phenotypic characterization of an Arabidopsis T-DNA insertion line SALK_063500. DOI: 10.1016/j.dib.2018.03.107 ; PMID: 29900258
- A structural exposé of noncanonical molecular reactivity within the protein tyrosine phosphatase WPD loop. DOI: 10.1038/s41467-022-29673-y ; PMID: 35468885
- Arabidopsis PFA-DSP-Type Phosphohydrolases Target Specific Inositol Pyrophosphate Messengers. DOI: 10.1021/acs.biochem.2c00145 ; PMID: 35640071
- Structural and functional characterization of a novel phosphatase from the Arabidopsis thaliana gene locus At1g05000. DOI: 10.1002/prot.22041 ; PMID: 18433060
- Isolation and characterization of a gene involved in ethylene biosynthesis from Arabidopsis thaliana. DOI: 10.1016/0378-1119(93)90096-l ; PMID: 8262380
- Saturated very-long-chain fatty acids promote cotton fiber and Arabidopsis cell elongation by activating ethylene biosynthesis. DOI: 10.1105/tpc.107.054437 ; PMID: 17993622
- Fusarium oxysporum hijacks COI1-mediated jasmonate signaling to promote disease development in Arabidopsis. DOI: 10.1111/j.1365-313X.2009.03831.x ; PMID: 19220788
Gene Resources
- UniProt: A0A178WF34
- EMBL: CACRSJ010000104, LUHQ01000001
- AlphaFoldDB: A0A178WF34
- EnsemblPlants: AT1G03600.1
- Gramene: AT1G03600.1
- KEGG: ath:AT1G03600
- Orthologous matrix: GDYRQDT
- ExpressionAtlas: AT1G03600
- InterPro: IPR025585, IPR038450
- PANTHER: PTHR34041, PTHR34041:SF1
- Gene3D: 1.20.58.810
- SWISS-MODEL: A0A178WF34
Sequences
cDNA Sequence
- >AT1G03600.1
TTAAAAAAAAAAATCTTAATTTTGTGAAATCCAAAGGGATCATCATAATCATCATCCCATGTGTCTGACAGCAAGAGAAGAATGTCACGTGTTTGTGGGTCAATTTAACCAAATGCTATATCTTCCAATTGCAGCATTATCAAAAATTACTAAACTAAAAAGGCCACGCACAATGACTCATCATCGCGTGGGCTTTGACATATGGGCCTTATCTTAATCGGGCTTTACAATTAAACCAAACAGATATAAAAACAAGCAAATCCTGACCTGGCAGTGGATCTTCATGTGTCATCCTCAAAAACCATAGAATCTAAGATAAGAAGATAAGGGACACGTGTCAAAAATCCAACACACAGAAACACATTTTCCCCGATTTACTAACGCACAACAAAACTCTTTCATTCTCTTCTTACACCTTTTCTCCAGAGTTCCGACAATGGCTTCAGCATCAGCGACAGCTACTCTTCTCAAACCCAATCTTCCGCCGCATAAACCGACCATCATCGCCTCCTCCGTATCTCCGCCTCTTCCTCCTCCACGTCGCAACCACCTCCTCCGCCGCGATTTCCTCTCCCTGGCGGCAACATCCACGCTTCTAACACAATCGATTCAGTTTCTAGCTCCGGCGCCGGTCTCCGCCGCTGAAGATGAAGAGTATATCAAAGATACGTCGGCAGTGATCAGTAAAGTAAGGAGTACGCTTTCGATGCAGAAGACAGATCCGAATGTGGCTGATGCGGTGGCGGAGCTGAGAGAAGCGTCGAATTCTTGGGTTGCCAAGTACCGGAAAGAGAAAGCTCTTCTCGGAAAAGCTTCTTTCCGGGATATATACTCGGCGTTGAATGCTGTTTCAGGTCATTATGTGAGTTTTGGTCCGACGGCTCCGATTCCGGCGAAGAGGAAGGCGAGGATTCTTGAAGAGATGGAAACTGCTGAGAAAGCTCTCACAAGAGGAAGATGAAAAAACTGCAGTCAGGCCTTCTTCTCCATTTTCTTGTTGATGAAAATTTTATTTTCCTAAAAATGCCAATCGAATTATATGAGAAGAGAAACTTGAATTGGCTCGCCTGCTTTTTTTTTTCATTCCTGTAAAATACTTAATGTTCTGCATGATAATTGCTTAATTATCATTATCAGAGATACTTATATAACTTATATCGAATTCCATTTTCTCAATGATTGGAGCTGCTTCATAAGTTCGATTAACTCTCTTCTGTTGTACTATATACTTCCCTAGAAAATTTGTCTACACTTTCTTTAGTTTTTGATAGAGGAGAAATGAATTACACCATTATAAAATCTCCAAAACTCCTAA
CDS Sequence
- >AT1G03600.1
ATGGCTTCAGCATCAGCGACAGCTACTCTTCTCAAACCCAATCTTCCGCCGCATAAACCGACCATCATCGCCTCCTCCGTATCTCCGCCTCTTCCTCCTCCACGTCGCAACCACCTCCTCCGCCGCGATTTCCTCTCCCTGGCGGCAACATCCACGCTTCTAACACAATCGATTCAGTTTCTAGCTCCGGCGCCGGTCTCCGCCGCTGAAGATGAAGAGTATATCAAAGATACGTCGGCAGTGATCAGTAAAGTAAGGAGTACGCTTTCGATGCAGAAGACAGATCCGAATGTGGCTGATGCGGTGGCGGAGCTGAGAGAAGCGTCGAATTCTTGGGTTGCCAAGTACCGGAAAGAGAAAGCTCTTCTCGGAAAAGCTTCTTTCCGGGATATATACTCGGCGTTGAATGCTGTTTCAGGTCATTATGTGAGTTTTGGTCCGACGGCTCCGATTCCGGCGAAGAGGAAGGCGAGGATTCTTGAAGAGATGGAAACTGCTGAGAAAGCTCTCACAAGAGGAAGATGA
Protein Sequence
- >AT1G03600.1
MASASATATLLKPNLPPHKPTIIASSVSPPLPPPRRNHLLRRDFLSLAATSTLLTQSIQFLAPAPVSAAEDEEYIKDTSAVISKVRSTLSMQKTDPNVADAVAELREASNSWVAKYRKEKALLGKASFRDIYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALTRGR