Information report for AT1G03140
Gene Details
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Functional Descriptions
- PO:0025195 — pollen tube cell — célula del tubo polínico (Spanish, exact), 花粉管細胞 (Japanese, exact)
- PO:0000293 — guard cell — célula guardiana (Spanish, exact), occlusive cell (exact), 孔辺細胞 (Japanese, exact)
- CS69984 — Low GFP protein levels relative to the wild-type T line (CS69640) due to decreased splicing of the non-canonical AT-AC intron and increased splicing of the canonical GT-AG intron in GFP pre-mRNA. Short roots and small siliques compared to CS69640.
- CS69984 — Reduced silique length, reduced root length.
Functional Keywords
Literature and News
- Contributions of cryptochromes and phototropins to stomatal opening through the day. DOI: 10.1071/FP19053 ; PMID: 32045561
- Light controls stamen elongation via cryptochromes, phytochromes and COP1 through HY5 and HYH. DOI: 10.1111/tpj.14736 ; PMID: 32142184
- Molecular mechanisms suppressing COP1/SPA E3 ubiquitin ligase activity in blue light. DOI: 10.1111/ppl.13103 ; PMID: 32248530
- Structural insights into BIC-mediated inactivation of Arabidopsis cryptochrome 2. DOI: 10.1038/s41594-020-0410-z ; PMID: 32398826
- The oligomeric structures of plant cryptochromes. DOI: 10.1038/s41594-020-0420-x ; PMID: 32398825
- Coordinating light responses between the nucleus and the chloroplast, a role for plant cryptochromes and phytochromes. DOI: 10.1111/ppl.13148 ; PMID: 32519399
Gene Resources
- UniProt: Q9SA55
- EMBL: AC006550, AF360230, AY051020
- AlphaFoldDB: Q9SA55
- EnsemblPlants: AT1G03140.1
- Gramene: AT1G03140.1
- KEGG: ath:AT1G03140
- Orthologous matrix: SFAQVRW
- ExpressionAtlas: AT1G03140
- InterPro: IPR004098, IPR014906, IPR036285
- PANTHER: PTHR13007, PTHR13007:SF19
- SUPFAM: SSF158230, SSF47938
- Gene3D: 1.20.940.10, 4.10.280.110
- OrthoDB: Q9SA55
- SWISS-MODEL: Q9SA55
Homologs
- Malus domestica MDP0000152629
Sequences
cDNA Sequence
- >AT1G03140.1
AAATTTCATTATCTCCCGTCGTCGCGACCTTCTCAGACAACAGAACCAAATCCTCGGCGGCGATTGAAGAAACCTTTCCGATGGATCTGCTCAGGGAAGAGATTCTGAAGAAACGTAAGAGTCTAGCTGAGGAATCTGGTGGTAAGAAGTTCTTCAAGCGGTCTGAGATCGAGCAGAAGAAAATCCAGAAGCTTCGAGAGGAAGAACGACGCGAGCACGAGCTTAAGGCTCAGCGGAGAGCCGCCGCCGCCGCTTCCGGTGGAGATGGAAAATCATCCGGCTCTGCTCCTGGTTCTTCTAACGCAGCTACGTCTGCGTCTTCCAAATCCTCTGCATCGGACGCTGCTGCTATCGCCGATTCAAAAGCCCTAACCGACGAAAACCTAATTCTCCCGAGGCAGGAAGTGATTCGTCGTTTGAGATTCCTTAAGCAGCCGATGACTCTCTTCGGAGAAGATGATCAATCGCGGCTCGATCGACTCAAGTACGTTTTGAAGGAAGGATTGTTCGAGGTTGATAGTGATATGACTGAAGGACAGACGAATGATTTCTTGCGTGACATCGCAGAGCTTAAGAAGAGGCAGAAGAGTGGTATGATGGGAGATAGGAAGAGGAAGAGTAGAGATGAGAGAGGAAGAGACGAAGGTGATAGAGGTGAAACAAGGGAAGATGAACTTAGTGGTGGTGAATCGAGTGATGTTGATGCTGATAAAGATATGAAACGTTTGAAAGCTAACTTTGAGGATCTATGCGATGAGGATAAGATCCTTGTGTTTTATAAGAAGCTGTTGATTGAATGGAAACAGGAGCTTGATGCGATGGAGAACACTGAGAGGAGAACTGCAAAAGGGAAACAGATGGTAGCCACTTTTAAGCAGTGTGCTAGGTATCTAGTTCCTCTCTTCAACTTATGCAGGAAGAAGGGTTTACCAGCTGACATTCGTCAAGCTTTAATGGTGATGGTTAACCACTGCATAAAGCGAGACTACCTTGCTGCAATGGACCACTACATCAAACTAGCTATCGGGAACGCGCCATGGCCTATTGGAGTGACTATGGTTGGTATTCACGAACGTTCAGCTCGAGAGAAGATTTACACCAACAGTGTTGCTCACATCATGAACGATGAAACCACTCGCAAGTATCTTCAGTCAGTTAAAAGACTGATGACTTTCTGTCAAAGACGTTATCCAACTATGCCTTCTAAAGCCGTTGAGTTCAATAGCTTAGCCAACGGAAGCGACTTACAGTCTTTGCTAGCCGAAGAGAGATTCTTTGGTGGTAATCGTGAACAGGTCTCAGAGGAGAGACTCCGGCTCATGCCTTCTCAGAGCGAAAGCTAGTCTTACTGTGTTTTCTGCTTTGTTGTGTTTTTATTTTTGTATCAAAACGTTGACTCTGTATTATCGTCTATTTAAAACGTTGACCTGATTGTCTAGTCTTATGTGGCATGTGGGAAACATATCCAAACTCATAAAACGACATGGCCTAAAGATCTAGTAAGGGTAAGAGGAGAATCGAATCTTGGAACCTTATTGGTCCAAATGGTATGA
CDS Sequence
- >AT1G03140.1
ATGGATCTGCTCAGGGAAGAGATTCTGAAGAAACGTAAGAGTCTAGCTGAGGAATCTGGTGGTAAGAAGTTCTTCAAGCGGTCTGAGATCGAGCAGAAGAAAATCCAGAAGCTTCGAGAGGAAGAACGACGCGAGCACGAGCTTAAGGCTCAGCGGAGAGCCGCCGCCGCCGCTTCCGGTGGAGATGGAAAATCATCCGGCTCTGCTCCTGGTTCTTCTAACGCAGCTACGTCTGCGTCTTCCAAATCCTCTGCATCGGACGCTGCTGCTATCGCCGATTCAAAAGCCCTAACCGACGAAAACCTAATTCTCCCGAGGCAGGAAGTGATTCGTCGTTTGAGATTCCTTAAGCAGCCGATGACTCTCTTCGGAGAAGATGATCAATCGCGGCTCGATCGACTCAAGTACGTTTTGAAGGAAGGATTGTTCGAGGTTGATAGTGATATGACTGAAGGACAGACGAATGATTTCTTGCGTGACATCGCAGAGCTTAAGAAGAGGCAGAAGAGTGGTATGATGGGAGATAGGAAGAGGAAGAGTAGAGATGAGAGAGGAAGAGACGAAGGTGATAGAGGTGAAACAAGGGAAGATGAACTTAGTGGTGGTGAATCGAGTGATGTTGATGCTGATAAAGATATGAAACGTTTGAAAGCTAACTTTGAGGATCTATGCGATGAGGATAAGATCCTTGTGTTTTATAAGAAGCTGTTGATTGAATGGAAACAGGAGCTTGATGCGATGGAGAACACTGAGAGGAGAACTGCAAAAGGGAAACAGATGGTAGCCACTTTTAAGCAGTGTGCTAGGTATCTAGTTCCTCTCTTCAACTTATGCAGGAAGAAGGGTTTACCAGCTGACATTCGTCAAGCTTTAATGGTGATGGTTAACCACTGCATAAAGCGAGACTACCTTGCTGCAATGGACCACTACATCAAACTAGCTATCGGGAACGCGCCATGGCCTATTGGAGTGACTATGGTTGGTATTCACGAACGTTCAGCTCGAGAGAAGATTTACACCAACAGTGTTGCTCACATCATGAACGATGAAACCACTCGCAAGTATCTTCAGTCAGTTAAAAGACTGATGACTTTCTGTCAAAGACGTTATCCAACTATGCCTTCTAAAGCCGTTGAGTTCAATAGCTTAGCCAACGGAAGCGACTTACAGTCTTTGCTAGCCGAAGAGAGATTCTTTGGTGGTAATCGTGAACAGGTCTCAGAGGAGAGACTCCGGCTCATGCCTTCTCAGAGCGAAAGCTAG
Protein Sequence
- >AT1G03140.1
MDLLREEILKKRKSLAEESGGKKFFKRSEIEQKKIQKLREEERREHELKAQRRAAAAASGGDGKSSGSAPGSSNAATSASSKSSASDAAAIADSKALTDENLILPRQEVIRRLRFLKQPMTLFGEDDQSRLDRLKYVLKEGLFEVDSDMTEGQTNDFLRDIAELKKRQKSGMMGDRKRKSRDERGRDEGDRGETREDELSGGESSDVDADKDMKRLKANFEDLCDEDKILVFYKKLLIEWKQELDAMENTERRTAKGKQMVATFKQCARYLVPLFNLCRKKGLPADIRQALMVMVNHCIKRDYLAAMDHYIKLAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSVKRLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEERFFGGNREQVSEERLRLMPSQSES