Information report for AT1G02660
Gene Details
|
|
Functional Descriptions
- PO:0000013 — cauline leaf — hoja caulinar (Spanish, exact), 茎生葉、茎葉 (Japanese, exact)
- PO:0000230 — inflorescence meristem — meristema de la inflorescencia (Spanish, exact), 花序分裂組織 (Japanese, exact)
- PO:0009010 — seed — semilla (Spanish, exact), 種子 (Japanese, exact), pyrene (narrow), diaspore (broad)
- PO:0009030 — carpel — carpelo (Spanish, exact), 心皮 (Japanese, exact), Poaceae carpel (narrow), Zea carpel (narrow), pistil (broad)
- PO:0009032 — petal — pétalo (Spanish, exact), 花弁 (Japanese, exact)
- PO:0009047 — stem — caña (Spanish, exact), culm (exact), eje primario (Spanish, exact), primary axis (exact), primary stem (exact), tallo (Spanish, exact), tronco (Spanish, exact), 茎 (Japanese, exact), bole (narrow), cane (narrow), caudex (narrow), caudices (narrow), core (narrow), primocane (narrow), scape (narrow), stalk (narrow), trunk (narrow)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
- PO:0000084 — plant sperm cell — célula espermática o esperma (Spanish, exact), male gamete (exact), microgamete (exact), 植物精子細胞 (Japanese, exact), sperm nucleus (related), sperm cell (broad)
- PO:0025195 — pollen tube cell — célula del tubo polínico (Spanish, exact), 花粉管細胞 (Japanese, exact)
- PO:0000293 — guard cell — célula guardiana (Spanish, exact), occlusive cell (exact), 孔辺細胞 (Japanese, exact)
- GO:0009507 — located in — chloroplast
- GO:0052740 — enables — 1-acyl-2-lysophosphatidylserine acylhydrolase activity
- GO:0031349 — acts upstream of or within — positive regulation of defense response
- GO:0008970 — enables — phospholipase A1 activity
- GO:0002213 — acts upstream of or within — defense response to insect
- GO:0052739 — enables — phosphatidylserine 1-acylhydrolase activity
- GO:0005576 — located in — extracellular region
- GO:0009628 — acts upstream of or within — response to abiotic stimulus
- GO:0047714 — enables — galactolipase activity
- GO:0102549 — enables — 1-18:1-2-16:0-monogalactosyldiacylglycerol lipase activity
- SALK_052897 — Homozygotes are embryo lethal. Somewhat reduced transmission through the pollen.
- SALK_134251c — Seedlings screened in bulk via high throughput methods for responses to various stressors. Results are in comparison to Col-0.heat:no change,cold:no change,oxidative stress:decreased,osmotic stress:no change,salt stress:increased,ABA:no change,hypoxia:no change.
Functional Keywords
- cauline leaf , inflorescence meristem , seed , carpel , petal , stem , pollen , plant sperm cell , pollen tube cell , guard cell
Literature and News
- ABI3 and PIL5 collaboratively activate the expression of SOMNUS by directly binding to its promoter in imbibed Arabidopsis seeds. DOI: 10.1105/tpc.110.080721 ; PMID: 21467583
- γ-Aminobutyric acid transaminase deficiency impairs central carbon metabolism and leads to cell wall defects during salt stress in Arabidopsis roots. DOI: 10.1111/pce.12033 ; PMID: 23148892
- The Arabidopsis tandem CCCH zinc finger proteins AtTZF4, 5 and 6 are involved in and gibberellic acid-mediated regulation of seed germination. DOI: 10.1111/pce.12084 ; PMID: 23421766
- Control of seed germination by light-induced histone arginine demethylation activity. DOI: 10.1016/j.devcel.2012.01.024 ; PMID: 22483719
- Spatially and genetically distinct control of seed germination by phytochromes A and B. DOI: 10.1101/gad.194266.112 ; PMID: 22948663
- ABA-insensitive3, ABA-insensitive5, and DELLAs Interact to activate the expression of SOMNUS and other high-temperature-inducible genes in imbibed seeds in Arabidopsis. DOI: 10.1105/tpc.113.118604 ; PMID: 24326588
- Plant Tandem CCCH Zinc Finger Proteins Interact with ABA, Drought, and Stress Response Regulators in Processing-Bodies and Stress Granules. DOI: 10.1371/journal.pone.0151574 ; PMID: 26978070
- AFP2 as the novel regulator breaks high-temperature-induced seeds secondary dormancy through ABI5 and SOM in Arabidopsis thaliana. DOI: 10.1016/j.bbrc.2018.04.222 ; PMID: 29723526
- Carbon monoxide signal regulates light-initiated seed germination by suppressing SOM expression. DOI: 10.1016/j.plantsci.2018.04.009 ; PMID: 29807609
- MOTHER-OF-FT-AND-TFL1 represses seed germination under far-red light by modulating phytohormone responses in Arabidopsis thaliana. DOI: 10.1073/pnas.1806460115 ; PMID: 30061395
- PRR5, 7 and 9 positively modulate TOR signaling-mediated root cell proliferation by repressing TANDEM ZINC FINGER 1 in Arabidopsis. DOI: 10.1093/nar/gkz191 ; PMID: 30892623
Gene Resources
- UniProt: A0A654EB82
- EMBL: CACRSJ010000104
- AlphaFoldDB: A0A654EB82
- EnsemblPlants: AT1G02660.1
- Gramene: AT1G02660.1
- KEGG: ath:AT1G02660
- Orthologous matrix: VCYEENK
- ExpressionAtlas: AT1G02660
- InterPro: IPR002921, IPR029058, IPR043367
- PANTHER: PTHR46483, PTHR46483:SF4
- SUPFAM: SSF53474
- Gene3D: 3.40.50.1820
- SWISS-MODEL: A0A654EB82
- Conserved Domain Database: cd00519
Sequences
cDNA Sequence
- >AT1G02660.1
ATCGTAAAAAAAAAAAAAAAAATCACGGAAAGCAAAAGAAAAATGAAAAAAAAAAAAGTCTTCTTTTTGGCTATTTATTTAAAATAGGGAAACGAAAATATAGCATTAAATAGATCTCTCTCACACAGAAGTTTCTTCTTCGGCGATCTGTTCGGCTGATAAACAATTTTTTCTTCTTTGCTCTTTGCTAAATATTCTCAATTCTAAATCTTTCTGTGGGTACAATTTCACATTCTAAACAAAATTTTAAGATCGTTAATAGTTTTAAATTGTGAATAAGAACCCCAAAGAGACAAAGAGACATTCCCAAAAGCAAAACAGAAAATAAGTTTTCTTTCGATGGACAGTTTGTGTTTGAATAGCGGTTTACACGGTGTAATTCCAGCGATCACTGCGGTTGGAAACGGCGGTTGCGGTGGAGTTGTTGAAGTCCGAGCAACTGCGTCGGCACCATCGCAAAAAAGAGGACCTTTCGGGTTCTCATTTAAGTACCCACTGACGCCGTTTTGGTCTCGCGGCGGTGGAGGAGGAATTGCGTCGAGGAGACGAAGTGGATTGTGTTTAGACGACGCCGTTTTGGTTGATTCCGGCGATTCGAGAAAGCCGATCGCGGAGGAGACGGCGGTGGAAATGGATACGGAGAGGCGAAATGGGAGCTGGGTTTTGAAGATCTTGGATGTACAATCTACGTGGAAACACGAAGAAGAAGAAGATGATGATGAAGTAGAAGATGAAGACGGAGACGAAGACGAGGAGGTTGAATTAGACGACGCCGTAGTATCTGAAGATGATGGTGGATGCGATGTATGTTCAGTTTTGGAAGATGATGGCAACGAAGCAAACAAATTTCAACTCGATAGAGAATCGTTCTCCAAATTGCTAAGGAGGGTTACGTTACCCGAATCAAAACTCTATGCCCAACTATCGTATTTGGGAAACTTGGCTTATTCAATTTCAAAAATCAAGCCTGCGAATCTGTCGAAATATTACGGCCTGAGATTTGTAACTTCATCAGCTGAGAAAACAGAATCGGCGTTAAAAGCTGAGAATGGTGAAGTTTCAGGTGAGACTAAGCCAATTGTGGAAGCAGAAGAAGAAGTTGAAGAAGAAGAGAAGAACAAAAGTCGCAAGATTAGTGCTTCTGCTGCATATGAGATTGTTGCATCAGCTGCTTCTTACCTTCACTCTCGTACCAACAACATACTTCCTTTCAACTCTTCATCGAAAGCCGAGAATTCGGACAAACATGATGTAAATTTGACTAATGCGGAGTCATCATCAGATGTTGCTTATTCTGTTACTTCTGTTGTTGCTGCTGAGGAAGATGTGAAGCAAGCAGTTGCAGACGATTTGAAATCCACGATTTCGTCTCCCTGCGATTGGTTTATATGTGATGATGATCAGAGTCACACTAGATTCGTTGTGATTCAGGGATCTGAATCTCTAGCTTCTTGGCAAGCAAATTTACTCTTTGAGCCTATTGAATTTGAGGGCCTTGGTGCGATCGTACACAGAGGAATATACGAAGCTGCAAAAGGAATGTATGAACAAATGCTACCTGAAGTTAAAGCCCATATTAAAACCCATGGGACCAGCGCTAAATTCCGTTTCACCGGTCATTCATTAGGTGGAAGCTTATCGCTATTACTAAACCTCATGTTACTCGTTCGAGGCGAAGTACCTGCGTCTTCTTTACTTCCGGTTATAACATATGGTGCACCATTTGTGCTATGTGGAGGTGACCGTCTTCTTAAGAAACTCGGATTGCCTAAAAGCCATGTTCAAGCTATTGTTATGCACCGTGACATTGTTCCGAGAGCTTTTTCTTGTAACTATCCGTACCATGTTGCTGAGCTTCTCAAAGCTGTTAATGGAAACTTCCGTAGCCATCCTTGTCTTAACAAACAGAGTATGTTGTATTCTCCGATGGGCGAGCTTCTGATTCTTCAACCAGATGAGACATTCTCCCCCGGGCATGAACTTCTTCCTTCCGGAAACGGTTTATACCTTCTAACTAGTGATTTTGAATCGCCGGATATTGAAGATTCGGATGAGGAGCGGTTAAGAGCCGCGCAGACGGTTTTCTTGAACACCCCGCATCCTCTCGACATTCTCAGCGACAGATCGGCTTATGGGTCCAGCGGAACAATCCAAAGAGACCATGATATGAACTCGTATCTGAAAGCGGTTAGGAGTGTAATAAGAAAGGAAGTGAATCAGATAAGGAGAGCAAAAAGGGAGCATCGCCGGAGTCTTTGGTGGCCAATTCTGGTGGCTAGAGAAAGTGGAAGCTCAGGGATTGCGGTCAGTAACGGCCAAATCAACGGTCAGGATTTCTCCGGGATGATGCAGACAGGAAGAAAGTCGTTGCAGAGGTTTAGCCGCCTTGTGGCGTCTCAACATATGCCGTTGATCGTTGTTATGTTGTTTCCGGTTAAGTTGTTGTTCCTTGGAGCTTTCAACGTCTTTAGTTTCCGTTGAAAAGTTTCTTTTGGCGGGTTATGATCATTTGCTTATACCGGTTCAGACCGAATTTTGGTTTGACCGGTTTAGATCATTCTTTATTCATATAGTATCTTGTTTGATTGTTTGTTGGGGCCATTGGAGGCTTTCTATGTTAGATACATTGGTTTCACGCATAAAGGTTGTGAAAAAGGAACAAAAGGGGCCAGTATTTAATATTTGTAATTATAAATTGTGCAAAAGTATTGTCTTAACAAGTGGGAAGAACCAATTTGATTACACTCTATTAGTCAACAATCATGTATATATTGTAATTCACAATTATATTTGAGATTTCTTCTTTGTAACCACTGATTGCTTGTGAGTTGTGACAAAAAAA
CDS Sequence
- >AT1G02660.1
ATGGACAGTTTGTGTTTGAATAGCGGTTTACACGGTGTAATTCCAGCGATCACTGCGGTTGGAAACGGCGGTTGCGGTGGAGTTGTTGAAGTCCGAGCAACTGCGTCGGCACCATCGCAAAAAAGAGGACCTTTCGGGTTCTCATTTAAGTACCCACTGACGCCGTTTTGGTCTCGCGGCGGTGGAGGAGGAATTGCGTCGAGGAGACGAAGTGGATTGTGTTTAGACGACGCCGTTTTGGTTGATTCCGGCGATTCGAGAAAGCCGATCGCGGAGGAGACGGCGGTGGAAATGGATACGGAGAGGCGAAATGGGAGCTGGGTTTTGAAGATCTTGGATGTACAATCTACGTGGAAACACGAAGAAGAAGAAGATGATGATGAAGTAGAAGATGAAGACGGAGACGAAGACGAGGAGGTTGAATTAGACGACGCCGTAGTATCTGAAGATGATGGTGGATGCGATGTATGTTCAGTTTTGGAAGATGATGGCAACGAAGCAAACAAATTTCAACTCGATAGAGAATCGTTCTCCAAATTGCTAAGGAGGGTTACGTTACCCGAATCAAAACTCTATGCCCAACTATCGTATTTGGGAAACTTGGCTTATTCAATTTCAAAAATCAAGCCTGCGAATCTGTCGAAATATTACGGCCTGAGATTTGTAACTTCATCAGCTGAGAAAACAGAATCGGCGTTAAAAGCTGAGAATGGTGAAGTTTCAGGTGAGACTAAGCCAATTGTGGAAGCAGAAGAAGAAGTTGAAGAAGAAGAGAAGAACAAAAGTCGCAAGATTAGTGCTTCTGCTGCATATGAGATTGTTGCATCAGCTGCTTCTTACCTTCACTCTCGTACCAACAACATACTTCCTTTCAACTCTTCATCGAAAGCCGAGAATTCGGACAAACATGATGTAAATTTGACTAATGCGGAGTCATCATCAGATGTTGCTTATTCTGTTACTTCTGTTGTTGCTGCTGAGGAAGATGTGAAGCAAGCAGTTGCAGACGATTTGAAATCCACGATTTCGTCTCCCTGCGATTGGTTTATATGTGATGATGATCAGAGTCACACTAGATTCGTTGTGATTCAGGGATCTGAATCTCTAGCTTCTTGGCAAGCAAATTTACTCTTTGAGCCTATTGAATTTGAGGGCCTTGGTGCGATCGTACACAGAGGAATATACGAAGCTGCAAAAGGAATGTATGAACAAATGCTACCTGAAGTTAAAGCCCATATTAAAACCCATGGGACCAGCGCTAAATTCCGTTTCACCGGTCATTCATTAGGTGGAAGCTTATCGCTATTACTAAACCTCATGTTACTCGTTCGAGGCGAAGTACCTGCGTCTTCTTTACTTCCGGTTATAACATATGGTGCACCATTTGTGCTATGTGGAGGTGACCGTCTTCTTAAGAAACTCGGATTGCCTAAAAGCCATGTTCAAGCTATTGTTATGCACCGTGACATTGTTCCGAGAGCTTTTTCTTGTAACTATCCGTACCATGTTGCTGAGCTTCTCAAAGCTGTTAATGGAAACTTCCGTAGCCATCCTTGTCTTAACAAACAGAGTATGTTGTATTCTCCGATGGGCGAGCTTCTGATTCTTCAACCAGATGAGACATTCTCCCCCGGGCATGAACTTCTTCCTTCCGGAAACGGTTTATACCTTCTAACTAGTGATTTTGAATCGCCGGATATTGAAGATTCGGATGAGGAGCGGTTAAGAGCCGCGCAGACGGTTTTCTTGAACACCCCGCATCCTCTCGACATTCTCAGCGACAGATCGGCTTATGGGTCCAGCGGAACAATCCAAAGAGACCATGATATGAACTCGTATCTGAAAGCGGTTAGGAGTGTAATAAGAAAGGAAGTGAATCAGATAAGGAGAGCAAAAAGGGAGCATCGCCGGAGTCTTTGGTGGCCAATTCTGGTGGCTAGAGAAAGTGGAAGCTCAGGGATTGCGGTCAGTAACGGCCAAATCAACGGTCAGGATTTCTCCGGGATGATGCAGACAGGAAGAAAGTCGTTGCAGAGGTTTAGCCGCCTTGTGGCGTCTCAACATATGCCGTTGATCGTTGTTATGTTGTTTCCGGTTAAGTTGTTGTTCCTTGGAGCTTTCAACGTCTTTAGTTTCCGTTGA
Protein Sequence
- >AT1G02660.1
MDSLCLNSGLHGVIPAITAVGNGGCGGVVEVRATASAPSQKRGPFGFSFKYPLTPFWSRGGGGGIASRRRSGLCLDDAVLVDSGDSRKPIAEETAVEMDTERRNGSWVLKILDVQSTWKHEEEEDDDEVEDEDGDEDEEVELDDAVVSEDDGGCDVCSVLEDDGNEANKFQLDRESFSKLLRRVTLPESKLYAQLSYLGNLAYSISKIKPANLSKYYGLRFVTSSAEKTESALKAENGEVSGETKPIVEAEEEVEEEEKNKSRKISASAAYEIVASAASYLHSRTNNILPFNSSSKAENSDKHDVNLTNAESSSDVAYSVTSVVAAEEDVKQAVADDLKSTISSPCDWFICDDDQSHTRFVVIQGSESLASWQANLLFEPIEFEGLGAIVHRGIYEAAKGMYEQMLPEVKAHIKTHGTSAKFRFTGHSLGGSLSLLLNLMLLVRGEVPASSLLPVITYGAPFVLCGGDRLLKKLGLPKSHVQAIVMHRDIVPRAFSCNYPYHVAELLKAVNGNFRSHPCLNKQSMLYSPMGELLILQPDETFSPGHELLPSGNGLYLLTSDFESPDIEDSDEERLRAAQTVFLNTPHPLDILSDRSAYGSSGTIQRDHDMNSYLKAVRSVIRKEVNQIRRAKREHRRSLWWPILVARESGSSGIAVSNGQINGQDFSGMMQTGRKSLQRFSRLVASQHMPLIVVMLFPVKLLFLGAFNVFSFR