Information report for AT1G02640
Gene Details
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Functional Descriptions
- PO:0000013 — cauline leaf — hoja caulinar (Spanish, exact), 茎生葉、茎葉 (Japanese, exact)
- PO:0000230 — inflorescence meristem — meristema de la inflorescencia (Spanish, exact), 花序分裂組織 (Japanese, exact)
- PO:0009010 — seed — semilla (Spanish, exact), 種子 (Japanese, exact), pyrene (narrow), diaspore (broad)
- PO:0009030 — carpel — carpelo (Spanish, exact), 心皮 (Japanese, exact), Poaceae carpel (narrow), Zea carpel (narrow), pistil (broad)
- PO:0009032 — petal — pétalo (Spanish, exact), 花弁 (Japanese, exact)
- PO:0009047 — stem — caña (Spanish, exact), culm (exact), eje primario (Spanish, exact), primary axis (exact), primary stem (exact), tallo (Spanish, exact), tronco (Spanish, exact), 茎 (Japanese, exact), bole (narrow), cane (narrow), caudex (narrow), caudices (narrow), core (narrow), primocane (narrow), scape (narrow), stalk (narrow), trunk (narrow)
- PO:0000084 — plant sperm cell — célula espermática o esperma (Spanish, exact), male gamete (exact), microgamete (exact), 植物精子細胞 (Japanese, exact), sperm nucleus (related), sperm cell (broad)
- PO:0020003 — plant ovule — óvulo vegetal (Spanish, exact), 胚珠 (Japanese, exact), Poaceae ovule (narrow), Zea ovule (narrow)
- PO:0000293 — guard cell — célula guardiana (Spanish, exact), occlusive cell (exact), 孔辺細胞 (Japanese, exact)
- GO:0009044 — enables — xylan 1,4-beta-xylosidase activity
- GO:0031222 — involved in — arabinan catabolic process
- GO:0045493 — involved in — xylan catabolic process
- GO:0005576 — located in — extracellular region
- GO:0046556 — enables — alpha-L-arabinofuranosidase activity
Functional Keywords
- cauline leaf , inflorescence meristem , seed , carpel , petal , stem , plant sperm cell , plant ovule , guard cell
Literature and News
- Arabidopsis PRC1 core component AtRING1 regulates stem cell-determining carpel development mainly through repression of class I KNOX genes. DOI: 10.1186/s12915-016-0336-4 ; PMID: 28007029
- Polycomb Group Proteins RING1A and RING1B Regulate the Vegetative Phase Transition in Arabidopsis. DOI: 10.3389/fpls.2017.00867 ; PMID: 28596781
- RAWUL: a new ubiquitin-like domain in PRC1 ring finger proteins that unveils putative plant and worm PRC1 orthologs. DOI: 10.1186/1471-2164-9-308 ; PMID: 18588675
- NA DOI: NA ; PMID: 33589908
- The plant TPX2 protein regulates prospindle assembly before nuclear envelope breakdown. DOI: 10.1105/tpc.107.056796 ; PMID: 18941054
- Plant Aurora kinases play a role in maintenance of primary meristems and control of endoreduplication. DOI: 10.1111/j.1469-8137.2011.03989.x ; PMID: 22150830
- Aberrant microtubule organization in dividing root cells of p60-katanin mutants. DOI: 10.4161/psb.7.1.18358 ; PMID: 22301959
- Overexpressed TPX2 causes ectopic formation of microtubular arrays in the nuclei of acentrosomal plant cells. DOI: 10.1093/jxb/ert271 ; PMID: 24006426
- Microtubule organization and microtubule-associated proteins in plant cells. DOI: 10.1016/B978-0-12-800178-3.00001-4 ; PMID: 25262237
- Genome-wide analysis of the TPX2 family proteins in Eucalyptus grandis. DOI: 10.1186/s12864-016-3303-0 ; PMID: 27881090
- TPX2-LIKE PROTEIN3 Is the Primary Activator of α-Aurora Kinases and Is Essential for Embryogenesis. DOI: 10.1104/pp.18.01515 ; PMID: 31097675
- Identification and characterization of the land-plant-specific microtubule nucleation factor MACET4. DOI: 10.1242/jcs.232819 ; PMID: 31076517
- Functional Divergence of Microtubule-Associated TPX2 Family Members in Arabidopsis thaliana. DOI: 10.3390/ijms21062183 ; PMID: 32235723
- SOMNUS, a CCCH-type zinc finger protein in Arabidopsis, negatively regulates light-dependent seed germination downstream of PIL5. DOI: 10.1105/tpc.108.058859 ; PMID: 18487351
Gene Resources
- UniProt: A0A654E7L3
- EMBL: CACRSJ010000104
- AlphaFoldDB: A0A654E7L3
- EnsemblPlants: AT1G02640.1
- Gramene: AT1G02640.1
- KEGG: ath:AT1G02640
- Orthologous matrix: GNETGNC
- ExpressionAtlas: AT1G02640
- InterPro: IPR001764, IPR002772, IPR013783
- PANTHER: PTHR42721, PTHR42721:SF45
- SUPFAM: SSF51445, SSF52279
- Gene3D: 2.60.40.10, 3.20.20.300, 3.40.50.1700
- SWISS-MODEL: A0A654E7L3
Homologs
- Fragaria vesca mrna03614.1-v1.0-hybrid
- Oryza sativa TIPS-11-9
- Saccharum spontaneum Sspon.03G0015710-3C
Sequences
cDNA Sequence
- >AT1G02640.1
TTTAAATATAAAACCAATTCTTTATATCTAAATATGTTTGGTTTCGAAATATTCATATATATTAAAGAAAAATGATATTTCCTTGATAGAGTAAAGAAAATTCACGAAGAGAGCTCTACTCATTATCTTTATCATACCATTATCATTGCCTCTCTATATAAACATAACACGCAAACTTCACTCTCACAAGTCTTTCATCACATTTCCATTTTTCTCTCTTCCATAAAACCCAAAAGAAACTAGGAAGAGGAGTAAATAATATTTGTTTTAAAGAAATGATTCTCCACAAAATGGCGTTCTTGGCCGTTATTCTCTTCTTCTTGATAAGCAGCAGCAGCGTTTGCGTTCATAGCCGTGAAACGTTTGCTTGCGATACAAAGGACGCAGCAACAGCTACACTGAGATTCTGCCAGCTTTCAGTTCCTATACCGGAGAGAGTCAGAGATTTGATCGGACGGTTGACATTGGCCGAGAAAGTGAGCTTGTTAGGGAACACTGCGGCGGCGATACCACGTCTAGGAATCAAAGGGTACGAGTGGTGGTCGGAGGCTTTACACGGCGTTTCAAATGTGGGACCCGGTACTAAGTTCGGTGGGGTTTACCCTGCAGCCACCAGTTTCCCTCAAGTCATCACCACCGTTGCTTCTTTCAATGCCTCCTTGTGGGAATCCATCGGACGGGTTGTGTCAAATGAGGCCAGGGCCATGTACAACGGTGGAGTTGGTGGGCTTACGTATTGGAGCCCAAACGTTAACATATTGAGGGACCCACGTTGGGGACGTGGACAGGAAACTCCCGGTGAAGATCCAGTAGTAGCCGGTAAATACGCAGCGAGCTACGTCAGAGGGTTACAGGGAAACGACCGTAGCCGGTTAAAAGTAGCTGCTTGTTGCAAACATTTCACAGCTTACGATCTCGATAACTGGAACGGCGTCGACAGATTCCATTTCAACGCTAAGGTAAGCAAGCAAGACATAGAAGACACGTTCGACGTACCGTTCCGTATGTGTGTTAAAGAAGGTAACGTTGCGAGCATTATGTGTTCGTACAATCAAGTTAATGGTGTTCCTACATGTGCTGATCCTAATCTCCTCAAGAAGACCATACGCAATCAATGGGGTCTCAACGGGTATATCGTGTCTGATTGTGACTCTGTCGGTGTTTTGTACGATACCCAACATTACACTGGTACTCCTGAAGAAGCTGCCGCTGATTCCATCAAAGCTGGCTTGGATTTAGATTGTGGGCCATTTCTAGGAGCCCATACAATCGATGCGGTGAAGAAAAACTTGTTGCGTGAGTCCGATGTTGATAATGCCTTAATCAACACGCTAACAGTCCAAATGAGACTAGGAATGTTTGATGGCGATATAGCGGCTCAACCGTACGGACACCTTGGACCGGCACACGTGTGTACACCGGTTCACAAAGGACTAGCTCTCGAAGCAGCTCAACAAGGAATCGTCCTACTCAAAAATCACGGCTCGTCTCTACCTCTCTCAAGCCAACGTCACCGAACTGTCGCCGTAATTGGACCTAATTCAGACGCTACGGTCACAATGATTGGTAATTATGCAGGGGTTGCTTGTGGATATACCAGTCCGGTTCAAGGTATTACCGGTTATGCTCGAACCATTCATCAAAAGGGTTGCGTGGACGTACACTGCATGGATGATAGATTGTTCGATGCCGCGGTTGAAGCGGCTCGTGGAGCTGATGCGACGGTTCTTGTGATGGGTTTGGATCAGTCTATTGAAGCGGAGTTCAAGGACAGAAACAGTTTGCTTTTGCCTGGGAAACAACAAGAGCTTGTCTCTAGAGTTGCTAAGGCCGCTAAAGGCCCAGTTATCTTAGTATTGATGTCTGGTGGGCCTATCGATATATCTTTTGCTGAGAAGGATCGGAAAATTCCAGCGATTGTTTGGGCCGGGTATCCGGGTCAAGAAGGTGGTACCGCAATCGCCGATATCTTATTCGGCAGTGCTAATCCCGGAGGAAAGCTTCCGATGACTTGGTATCCGCAAGATTATTTAACCAATTTACCAATGACAGAAATGTCGATGCGGCCGGTCCATTCGAAGCGGATCCCGGGTCGGACTTACCGGTTCTACGACGGTCCAGTTGTTTACCCGTTCGGGCATGGTTTGAGTTACACGCGCTTTACTCACAACATAGCCGACGCGCCAAAAGTGATTCCTATAGCTGTTCGTGGAAGAAACGGCACCGTTTCAGGGAAATCAATCCGTGTGACGCACGCTAGGTGTGATCGTCTCTCTCTCGGAGTCCACGTGGAAGTTACTAACGTTGGCTCGAGAGATGGGACGCACACAATGCTTGTGTTCTCGGCTCCGCCGGGTGGAGAATGGGCTCCGAAGAAACAGCTGGTTGCTTTTGAGAGAGTACACGTGGCGGTTGGGGAGAAGAAGCGTGTGCAGGTGAATATACACGTGTGTAAGTATTTAAGTGTAGTGGACCGAGCCGGGAACCGAAGGATTCCGATCGGTGATCATGGGATTCATATTGGAGATGAGAGTCATACGGTGTCGCTTCAAGCTTCTACTCTTGGAGTCATCAAGTCTTGACTCTGTTTTTTTCTTTTCACTTTTCTTGTTGTTCCCAAAATATTTTTAAGAGATTTTAATGTTTCTAACGAAACGAATTTGAAAAAGGAAATACAAAACTAGAAGAAAATCTGTTTCTTATAATTCAAAAGATGTATTTAAAATTGAATTGTATGGCCTCGGATTTTTTAAAATAAAGGTTGTTTTCGGAA
CDS Sequence
- >AT1G02640.1
ATGATTCTCCACAAAATGGCGTTCTTGGCCGTTATTCTCTTCTTCTTGATAAGCAGCAGCAGCGTTTGCGTTCATAGCCGTGAAACGTTTGCTTGCGATACAAAGGACGCAGCAACAGCTACACTGAGATTCTGCCAGCTTTCAGTTCCTATACCGGAGAGAGTCAGAGATTTGATCGGACGGTTGACATTGGCCGAGAAAGTGAGCTTGTTAGGGAACACTGCGGCGGCGATACCACGTCTAGGAATCAAAGGGTACGAGTGGTGGTCGGAGGCTTTACACGGCGTTTCAAATGTGGGACCCGGTACTAAGTTCGGTGGGGTTTACCCTGCAGCCACCAGTTTCCCTCAAGTCATCACCACCGTTGCTTCTTTCAATGCCTCCTTGTGGGAATCCATCGGACGGGTTGTGTCAAATGAGGCCAGGGCCATGTACAACGGTGGAGTTGGTGGGCTTACGTATTGGAGCCCAAACGTTAACATATTGAGGGACCCACGTTGGGGACGTGGACAGGAAACTCCCGGTGAAGATCCAGTAGTAGCCGGTAAATACGCAGCGAGCTACGTCAGAGGGTTACAGGGAAACGACCGTAGCCGGTTAAAAGTAGCTGCTTGTTGCAAACATTTCACAGCTTACGATCTCGATAACTGGAACGGCGTCGACAGATTCCATTTCAACGCTAAGGTAAGCAAGCAAGACATAGAAGACACGTTCGACGTACCGTTCCGTATGTGTGTTAAAGAAGGTAACGTTGCGAGCATTATGTGTTCGTACAATCAAGTTAATGGTGTTCCTACATGTGCTGATCCTAATCTCCTCAAGAAGACCATACGCAATCAATGGGGTCTCAACGGGTATATCGTGTCTGATTGTGACTCTGTCGGTGTTTTGTACGATACCCAACATTACACTGGTACTCCTGAAGAAGCTGCCGCTGATTCCATCAAAGCTGGCTTGGATTTAGATTGTGGGCCATTTCTAGGAGCCCATACAATCGATGCGGTGAAGAAAAACTTGTTGCGTGAGTCCGATGTTGATAATGCCTTAATCAACACGCTAACAGTCCAAATGAGACTAGGAATGTTTGATGGCGATATAGCGGCTCAACCGTACGGACACCTTGGACCGGCACACGTGTGTACACCGGTTCACAAAGGACTAGCTCTCGAAGCAGCTCAACAAGGAATCGTCCTACTCAAAAATCACGGCTCGTCTCTACCTCTCTCAAGCCAACGTCACCGAACTGTCGCCGTAATTGGACCTAATTCAGACGCTACGGTCACAATGATTGGTAATTATGCAGGGGTTGCTTGTGGATATACCAGTCCGGTTCAAGGTATTACCGGTTATGCTCGAACCATTCATCAAAAGGGTTGCGTGGACGTACACTGCATGGATGATAGATTGTTCGATGCCGCGGTTGAAGCGGCTCGTGGAGCTGATGCGACGGTTCTTGTGATGGGTTTGGATCAGTCTATTGAAGCGGAGTTCAAGGACAGAAACAGTTTGCTTTTGCCTGGGAAACAACAAGAGCTTGTCTCTAGAGTTGCTAAGGCCGCTAAAGGCCCAGTTATCTTAGTATTGATGTCTGGTGGGCCTATCGATATATCTTTTGCTGAGAAGGATCGGAAAATTCCAGCGATTGTTTGGGCCGGGTATCCGGGTCAAGAAGGTGGTACCGCAATCGCCGATATCTTATTCGGCAGTGCTAATCCCGGAGGAAAGCTTCCGATGACTTGGTATCCGCAAGATTATTTAACCAATTTACCAATGACAGAAATGTCGATGCGGCCGGTCCATTCGAAGCGGATCCCGGGTCGGACTTACCGGTTCTACGACGGTCCAGTTGTTTACCCGTTCGGGCATGGTTTGAGTTACACGCGCTTTACTCACAACATAGCCGACGCGCCAAAAGTGATTCCTATAGCTGTTCGTGGAAGAAACGGCACCGTTTCAGGGAAATCAATCCGTGTGACGCACGCTAGGTGTGATCGTCTCTCTCTCGGAGTCCACGTGGAAGTTACTAACGTTGGCTCGAGAGATGGGACGCACACAATGCTTGTGTTCTCGGCTCCGCCGGGTGGAGAATGGGCTCCGAAGAAACAGCTGGTTGCTTTTGAGAGAGTACACGTGGCGGTTGGGGAGAAGAAGCGTGTGCAGGTGAATATACACGTGTGTAAGTATTTAAGTGTAGTGGACCGAGCCGGGAACCGAAGGATTCCGATCGGTGATCATGGGATTCATATTGGAGATGAGAGTCATACGGTGTCGCTTCAAGCTTCTACTCTTGGAGTCATCAAGTCTTGA
Protein Sequence
- >AT1G02640.1
MILHKMAFLAVILFFLISSSSVCVHSRETFACDTKDAATATLRFCQLSVPIPERVRDLIGRLTLAEKVSLLGNTAAAIPRLGIKGYEWWSEALHGVSNVGPGTKFGGVYPAATSFPQVITTVASFNASLWESIGRVVSNEARAMYNGGVGGLTYWSPNVNILRDPRWGRGQETPGEDPVVAGKYAASYVRGLQGNDRSRLKVAACCKHFTAYDLDNWNGVDRFHFNAKVSKQDIEDTFDVPFRMCVKEGNVASIMCSYNQVNGVPTCADPNLLKKTIRNQWGLNGYIVSDCDSVGVLYDTQHYTGTPEEAAADSIKAGLDLDCGPFLGAHTIDAVKKNLLRESDVDNALINTLTVQMRLGMFDGDIAAQPYGHLGPAHVCTPVHKGLALEAAQQGIVLLKNHGSSLPLSSQRHRTVAVIGPNSDATVTMIGNYAGVACGYTSPVQGITGYARTIHQKGCVDVHCMDDRLFDAAVEAARGADATVLVMGLDQSIEAEFKDRNSLLLPGKQQELVSRVAKAAKGPVILVLMSGGPIDISFAEKDRKIPAIVWAGYPGQEGGTAIADILFGSANPGGKLPMTWYPQDYLTNLPMTEMSMRPVHSKRIPGRTYRFYDGPVVYPFGHGLSYTRFTHNIADAPKVIPIAVRGRNGTVSGKSIRVTHARCDRLSLGVHVEVTNVGSRDGTHTMLVFSAPPGGEWAPKKQLVAFERVHVAVGEKKRVQVNIHVCKYLSVVDRAGNRRIPIGDHGIHIGDESHTVSLQASTLGVIKS