Information report for AT1G02130
Gene Details
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Functional Descriptions
- PO:0000013 — cauline leaf — hoja caulinar (Spanish, exact), 茎生葉、茎葉 (Japanese, exact)
- PO:0000230 — inflorescence meristem — meristema de la inflorescencia (Spanish, exact), 花序分裂組織 (Japanese, exact)
- PO:0009010 — seed — semilla (Spanish, exact), 種子 (Japanese, exact), pyrene (narrow), diaspore (broad)
- PO:0009030 — carpel — carpelo (Spanish, exact), 心皮 (Japanese, exact), Poaceae carpel (narrow), Zea carpel (narrow), pistil (broad)
- PO:0009032 — petal — pétalo (Spanish, exact), 花弁 (Japanese, exact)
- PO:0009047 — stem — caña (Spanish, exact), culm (exact), eje primario (Spanish, exact), primary axis (exact), primary stem (exact), tallo (Spanish, exact), tronco (Spanish, exact), 茎 (Japanese, exact), bole (narrow), cane (narrow), caudex (narrow), caudices (narrow), core (narrow), primocane (narrow), scape (narrow), stalk (narrow), trunk (narrow)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
- PO:0000084 — plant sperm cell — célula espermática o esperma (Spanish, exact), male gamete (exact), microgamete (exact), 植物精子細胞 (Japanese, exact), sperm nucleus (related), sperm cell (broad)
- PO:0000293 — guard cell — célula guardiana (Spanish, exact), occlusive cell (exact), 孔辺細胞 (Japanese, exact)
- GO:0005576 — located in — extracellular region
- GO:0032588 — located in — trans-Golgi network membrane
- GO:0000325 — located in — plant-type vacuole
- GO:0003924 — enables — GTPase activity
- GO:0000139 — located in — Golgi membrane
- GO:0006888 — acts upstream of or within — endoplasmic reticulum to Golgi vesicle-mediated transport
- GO:0005886 — located in — plasma membrane
- GO:0016192 — involved in — vesicle-mediated transport
- GO:0005794 — is active in — Golgi apparatus
Functional Keywords
- cauline leaf , inflorescence meristem , seed , carpel , petal , stem , pollen , plant sperm cell , guard cell
Literature and News
- Parental genome dosage imbalance deregulates imprinting in Arabidopsis. DOI: 10.1371/journal.pgen.1000885 ; PMID: 20333248
- Transcriptional profiles underlying parent-of-origin effects in seeds of Arabidopsis thaliana. DOI: 10.1186/1471-2229-10-72 ; PMID: 20406451
- The Arabidopsis CUL4-DDB1 complex interacts with MSI1 and is required to maintain MEDEA parental imprinting. DOI: 10.1038/emboj.2010.359 ; PMID: 21240189
- Overexpression of AtCSP4 affects late stages of embryo development in Arabidopsis. DOI: 10.1093/jxb/erq400 ; PMID: 21282328
- Determination of DNA methylation of imprinted genes in Arabidopsis endosperm. DOI: 10.3791/2327 ; PMID: 21307831
- Function of the DEMETER DNA glycosylase in the Arabidopsis thaliana male gametophyte. DOI: 10.1073/pnas.1105117108 ; PMID: 21518889
- The conserved fission complex on peroxisomes and mitochondria. DOI: 10.4161/psb.6.6.15241 ; PMID: 21617372
- Histone H1 affects gene imprinting and DNA methylation in Arabidopsis. DOI: 10.1111/j.1365-313X.2012.05028.x ; PMID: 22519754
- Identification of a DNA methylation-independent imprinting control region at the Arabidopsis MEDEA locus. DOI: 10.1101/gad.195123.112 ; PMID: 22855791
- The Armadillo repeat gene ZAK IXIK promotes Arabidopsis early embryo and endosperm development through a distinctive gametophytic maternal effect. DOI: 10.1105/tpc.112.102384 ; PMID: 23064319
- The Polycomb group protein MEDEA and the DNA methyltransferase MET1 interact to repress autonomous endosperm development in Arabidopsis. DOI: 10.1111/tpj.12070 ; PMID: 23146178
- TAF13 interacts with PRC2 members and is essential for Arabidopsis seed development. DOI: 10.1016/j.ydbio.2013.03.005 ; PMID: 23506837
- Genomic imprinting in the Arabidopsis embryo is partly regulated by PRC2. DOI: 10.1371/journal.pgen.1003862 ; PMID: 24339783
- An AP endonuclease functions in active DNA demethylation and gene imprinting in Arabidopsis [corrected]. DOI: 10.1371/journal.pgen.1004905 ; PMID: 25569774
- Correction: An AP endonuclease functions in active DNA demethylation and gene imprinting in Arabidopsis. DOI: 10.1371/journal.pgen.1005198 ; PMID: 25915657
- Rapid Elimination of the Persistent Synergid through a Cell Fusion Mechanism. DOI: 10.1016/j.cell.2015.03.018 ; PMID: 25913191
- An Epigenetic Role for Disrupted Paternal Gene Expression in Postzygotic Seed Abortion in Arabidopsis Interspecific Hybrids. DOI: 10.1016/j.molp.2015.09.009 ; PMID: 26409189
- Quantitative Genetics Identifies Cryptic Genetic Variation Involved in the Paternal Regulation of Seed Development. DOI: 10.1371/journal.pgen.1005806 ; PMID: 26811909
- A JUMONJI Protein with E3 Ligase and Histone H3 Binding Activities Affects Transposon Silencing in Arabidopsis. DOI: 10.1104/pp.15.01688 ; PMID: 26979329
- Transcriptional Regulation of Arabidopsis Polycomb Repressive Complex 2 Coordinates Cell-Type Proliferation and Differentiation. DOI: 10.1105/tpc.15.00744 ; PMID: 27650334
- FIE, a nuclear PRC2 protein, forms cytoplasmic complexes in Arabidopsis thaliana. DOI: 10.1093/jxb/erw373 ; PMID: 27811080
- Mutants in the imprinted PICKLE RELATED 2 gene suppress seed abortion of fertilization independent seed class mutants and paternal excess interploidy crosses in Arabidopsis. DOI: 10.1111/tpj.13500 ; PMID: 28155248
- Concerted Divergence after Gene Duplication in Polycomb Repressive Complexes. DOI: 10.1104/pp.16.01983 ; PMID: 28455403
- Developmental patterning of sub-epidermal cells in the outer integument of Arabidopsis seeds. DOI: 10.1371/journal.pone.0188148 ; PMID: 29141031
- The Polycomb-Group Repressor MEDEA Attenuates Pathogen Defense. DOI: 10.1104/pp.17.01579 ; PMID: 29954867
- MEDEA-interacting protein LONG-CHAIN BASE KINASE 1 promotes pattern-triggered immunity in Arabidopsis thaliana. DOI: 10.1007/s11103-020-00982-4 ; PMID: 32100164
- Single-cell RNA-seq analysis reveals ploidy-dependent and cell-specific transcriptome changes in Arabidopsis female gametophytes. DOI: 10.1186/s13059-020-02094-0 ; PMID: 32698836
Gene Resources
- UniProt: A0A178WIV4
- EMBL: CACRSJ010000104, CACSHJ010000087, LUHQ01000001
- AlphaFoldDB: A0A178WIV4
- EnsemblPlants: AT1G02130.1
- Gramene: AT1G02130.1
- KEGG: ath:AT1G02130
- Orthologous matrix: YHESRID
- ExpressionAtlas: AT1G02130
- InterPro: IPR001806, IPR005225, IPR027417
- PANTHER: PTHR47977
- SUPFAM: SSF52540
- PROSITE: PS51417, PS51419, PS51420
- Gene3D: 3.40.50.300
- OrthoDB: A0A178WIV4
- SWISS-MODEL: A0A178WIV4
- Conserved Domain Database: cd01869
Homologs
- Brassica napus GSBRNA2T00129504001, GSBRNA2T00109066001
- Cicer arietinum Ca_00017
- Daucus carota DCAR_006660
- Fragaria vesca mrna29786.1-v1.0-hybrid
- Lupinus albus Lalb_Chr04g0259661
- Malus domestica MDP0000180376
- Oryza sativa OsRab11C1, OsRab11, RGP1
- Raphanus raphanistrum RrC3821_p1
- Saccharum spontaneum Sspon.07G0027800-1B
- Solanum lycopersicum Solyc04g012180.3
Sequences
cDNA Sequence
- >AT1G02130.1
CTCATATTATTATTCAAGGCCCAAACACTGAATCTCCTCCTCTTGTAAATCGCGAGAGAAAATCAGAAAAGAGAGAGAGAGATCTCTGGCTCTGTATCGCTCGCTGCTCTTCCTCCCACAGATCGAAAACCATGAATCCTGAGTACGACTATCTTTTCAAGCTCCTGCTTATCGGGGATTCTGGCGTAGGCAAGTCTTGTCTTCTTTTGAGATTCTCTGATGATTCTTATGTAGAAAGTTACATTAGCACTATTGGAGTCGATTTTAAAATTAGGACTGTGGAACAAGATGGCAAAACAATTAAGCTCCAAATTTGGGACACTGCTGGTCAAGAACGGTTCAGGACTATTACTAGCAGTTACTACCGTGGGGCACATGGAATTATTATTGTCTACGATGTCACAGATGAAGAAAGCTTCAATAATGTCAAGCAATGGTTGAGTGAAATTGATCGTTATGCTAGTGACAATGTCAACAAACTCCTTGTTGGAAACAAGTCTGATCTTACTGAAAACAGAGCCATTCCTTATGAAACTGCCAAGGCTTTTGCCGATGAAATCGGGATTCCTTTTATGGAGACTAGTGCAAAAGATGCTACAAACGTAGAACAGGCTTTCATGGCAATGTCTGCATCCATCAAAGAGAGAATGGCTAGCCAACCAGCTGGGAATAATGCAAGACCACCGACCGTGCAGATCAGAGGACAGCCTGTGGCACAGAAGAACGGCTGCTGCTCAACTTGATTGACGTGACCAGCCTAGCAATATCCTTTCCAATCTTAGAACACGTGTTCCTTCTTTTGACTAGGCTCCAATTCACTACTACTTGGTTTTTACACAACATCCCCCCAAATCTGTCTTGTCTGTAATTAAGCTCCTTTGGTTGGTTATTATTCTGTTTTTCACGTTTCCTATTTGCTTTACCTCATGATGAGGTCCTCATCTTTCCAACATTCTTGTTTTTCATTTCTGCCTTTAGTGGTTTTCTATGGGTTTCTTTGCATAACAATGTTCTACGACTCGATTTAAAACCCACAAATTGTTTTTTCCTATATCAAACGTGATCATCATTGAAAACAAAGATAATCGTCTCGGGAATTTAAATTAGAAT
CDS Sequence
- >AT1G02130.1
ATGAATCCTGAGTACGACTATCTTTTCAAGCTCCTGCTTATCGGGGATTCTGGCGTAGGCAAGTCTTGTCTTCTTTTGAGATTCTCTGATGATTCTTATGTAGAAAGTTACATTAGCACTATTGGAGTCGATTTTAAAATTAGGACTGTGGAACAAGATGGCAAAACAATTAAGCTCCAAATTTGGGACACTGCTGGTCAAGAACGGTTCAGGACTATTACTAGCAGTTACTACCGTGGGGCACATGGAATTATTATTGTCTACGATGTCACAGATGAAGAAAGCTTCAATAATGTCAAGCAATGGTTGAGTGAAATTGATCGTTATGCTAGTGACAATGTCAACAAACTCCTTGTTGGAAACAAGTCTGATCTTACTGAAAACAGAGCCATTCCTTATGAAACTGCCAAGGCTTTTGCCGATGAAATCGGGATTCCTTTTATGGAGACTAGTGCAAAAGATGCTACAAACGTAGAACAGGCTTTCATGGCAATGTCTGCATCCATCAAAGAGAGAATGGCTAGCCAACCAGCTGGGAATAATGCAAGACCACCGACCGTGCAGATCAGAGGACAGCCTGTGGCACAGAAGAACGGCTGCTGCTCAACTTGA
Protein Sequence
- >AT1G02130.1
MNPEYDYLFKLLLIGDSGVGKSCLLLRFSDDSYVESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVGNKSDLTENRAIPYETAKAFADEIGIPFMETSAKDATNVEQAFMAMSASIKERMASQPAGNNARPPTVQIRGQPVAQKNGCCST