Gene Details:
- Gene ID: AT1G01940
- Gene Symbol: CYP18-1
- Gene Name: CYCLOPHILIN 18-1
- Description: Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein;(source:Araport11)
- TAIR Accession: locus:2025492
- Genome: Araport11_genome_release
- Species: Arabidopsis thaliana
Transcripts:
Plant Ontology Annotations:
- PO:0000013 — cauline leaf — hoja caulinar (Spanish, exact), 茎生葉、茎葉 (Japanese, exact)
- PO:0000230 — inflorescence meristem — meristema de la inflorescencia (Spanish, exact), 花序分裂組織 (Japanese, exact)
- PO:0009010 — seed — semilla (Spanish, exact), 種子 (Japanese, exact), pyrene (narrow), diaspore (broad)
- PO:0009030 — carpel — carpelo (Spanish, exact), 心皮 (Japanese, exact), Poaceae carpel (narrow), Zea carpel (narrow), pistil (broad)
- PO:0009032 — petal — pétalo (Spanish, exact), 花弁 (Japanese, exact)
- PO:0009047 — stem — caña (Spanish, exact), culm (exact), eje primario (Spanish, exact), primary axis (exact), primary stem (exact), tallo (Spanish, exact), tronco (Spanish, exact), 茎 (Japanese, exact), bole (narrow), cane (narrow), caudex (narrow), caudices (narrow), core (narrow), primocane (narrow), scape (narrow), stalk (narrow), trunk (narrow)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
- PO:0000084 — plant sperm cell — célula espermática o esperma (Spanish, exact), male gamete (exact), microgamete (exact), 植物精子細胞 (Japanese, exact), sperm nucleus (related), sperm cell (broad)
- PO:0000293 — guard cell — célula guardiana (Spanish, exact), occlusive cell (exact), 孔辺細胞 (Japanese, exact)
Gene Ontology:
- GO:0005634 — located in — nucleus
- GO:0003755 — enables — peptidyl-prolyl cis-trans isomerase activity
- GO:0034605 — acts upstream of or within — cellular response to heat
- GO:0030623 — enables — U5 snRNA binding
- GO:0000398 — acts upstream of or within — mRNA splicing, via spliceosome
- GO:0005730 — located in — nucleolus
- GO:0005515 — enables — protein binding
- GO:0010494 — located in — cytoplasmic stress granule
- GO:0030620 — enables — U2 snRNA binding
- GO:0006457 — involved in — protein folding
- GO:0071013 — part of — catalytic step 2 spliceosome
Function-related keywords:
- cauline leaf , inflorescence meristem , seed , carpel , petal , stem , pollen , plant sperm cell , guard cell
Literature:
- ADP-ribosylation factor D1 modulates Golgi morphology, cell plate formation, and plant growth in Arabidopsis. DOI: 10.1093/plphys/kiac329 ; PMID: 35876822
- Development of Arabidopsis whole-genome microarrays and their application to the discovery of binding sites for the TGA2 transcription factor in salicylic acid-treated plants. DOI: 10.1111/j.1365-313X.2006.02770.x ; PMID: 16824183
- Interaction of NIMIN1 with NPR1 modulates PR gene expression in Arabidopsis. DOI: 10.1105/tpc.104.027441 ; PMID: 15749762
- Oviposition by pierid butterflies triggers defense responses in Arabidopsis. DOI: 10.1104/pp.106.090837 ; PMID: 17142483
- Arabidopsis transcriptome changes in response to phloem-feeding silverleaf whitefly nymphs. Similarities and distinctions in responses to aphids. DOI: 10.1104/pp.106.090662 ; PMID: 17189325
- A high-performance, small-scale microarray for expression profiling of many samples in Arabidopsis-pathogen studies. DOI: 10.1111/j.1365-313X.2006.02972.x ; PMID: 17181774
- Phosphatidylinositol 4-kinase activation is an early response to salicylic acid in Arabidopsis suspension cells. DOI: 10.1104/pp.107.100842 ; PMID: 17496105
Sequences:
cDNA Sequence
- >AT1G01940.1
GATAAACGATTCCGTTTTGTTATTTTCTTAAATGGATCCATAATGTCATTAAAGTGGCCCATATAAGGCCCAATAATACAAGGCGGCGATGCAGAAAGATCTCGAACGAACAAAAGCGCCAAAAGCATCCTAGACGCGACTGAGAAAATAAATATAGAAGAAAGCCTCTCTGCTCGTTTTGCGTTTCCGAGCAACAATGTCGGTAACTTTGCACACGAACCTGGGTGACATCAAGTGCGAAATCTTCTGTGACGAGGTTCCCAAGAGTGCTGAGAACTTTTTGGCGTTGTGTGCTAGTGGCTACTACGATGGTACTATCTTTCATAGAAATATCAAAGGGTTCATGATTCAAGGAGGAGACCCCAAGGGGACCGGAAAAGGAGGAACTAGCATCTGGGGCAAGAAATTCAATGATGAGATCCGAGACTCCCTTAAGCACAATGCAAGAGGGATGCTGTCAATGGCAAACAGCGGTCCAAACACCAACGGAAGCCAGTTCTTCATAACCTATGCAAAACAACCACATCTCAATGGATTATACACCATCTTTGGCAAAGTCATTCATGGCTTCGAAGTGCTTGACATTATGGAAAAGACTCAAACAGGACCAGGAGATAGGCCGCTTGCTGAGATAAGGCTAAACCGTGTGACGATCCACGCCAATCCACTTGCTGGTTAAGTCTAATGTGGCAGAACCGAGCCAAGCCAAAAGTGTTGTTCTCTTTATTTGTTTCGATAGAGCTGACATGTACACTCAGAAACTGAACTAAGACCACTGTTTCACCCAATTAAAAAGTTTGTACTGGAGGATTTACCAATTACTGTCTTCAAAGGTGTTTTGTATTATTTAAAGACAAAAATAATTTTTTTTGCCCAA
CDS Sequence
- >AT1G01940.1
ATGTCGGTAACTTTGCACACGAACCTGGGTGACATCAAGTGCGAAATCTTCTGTGACGAGGTTCCCAAGAGTGCTGAGAACTTTTTGGCGTTGTGTGCTAGTGGCTACTACGATGGTACTATCTTTCATAGAAATATCAAAGGGTTCATGATTCAAGGAGGAGACCCCAAGGGGACCGGAAAAGGAGGAACTAGCATCTGGGGCAAGAAATTCAATGATGAGATCCGAGACTCCCTTAAGCACAATGCAAGAGGGATGCTGTCAATGGCAAACAGCGGTCCAAACACCAACGGAAGCCAGTTCTTCATAACCTATGCAAAACAACCACATCTCAATGGATTATACACCATCTTTGGCAAAGTCATTCATGGCTTCGAAGTGCTTGACATTATGGAAAAGACTCAAACAGGACCAGGAGATAGGCCGCTTGCTGAGATAAGGCTAAACCGTGTGACGATCCACGCCAATCCACTTGCTGGTTAA
Protein Sequence
- >AT1G01940.1
MSVTLHTNLGDIKCEIFCDEVPKSAENFLALCASGYYDGTIFHRNIKGFMIQGGDPKGTGKGGTSIWGKKFNDEIRDSLKHNARGMLSMANSGPNTNGSQFFITYAKQPHLNGLYTIFGKVIHGFEVLDIMEKTQTGPGDRPLAEIRLNRVTIHANPLAG