Gene Details:
- Gene ID: AT1G01670
- Gene Symbol: PUB56
- Gene Name:
- Description: RING/U-box superfamily protein;(source:Araport11)
- TAIR Accession: locus:2198180
- Genome: Araport11_genome_release
- Species: Arabidopsis thaliana
Transcripts:
Plant Ontology Annotations:
- PO:0000230 — inflorescence meristem — meristema de la inflorescencia (Spanish, exact), 花序分裂組織 (Japanese, exact)
- PO:0009047 — stem — caña (Spanish, exact), culm (exact), eje primario (Spanish, exact), primary axis (exact), primary stem (exact), tallo (Spanish, exact), tronco (Spanish, exact), 茎 (Japanese, exact), bole (narrow), cane (narrow), caudex (narrow), caudices (narrow), core (narrow), primocane (narrow), scape (narrow), stalk (narrow), trunk (narrow)
- PO:0000293 — guard cell — célula guardiana (Spanish, exact), occlusive cell (exact), 孔辺細胞 (Japanese, exact)
Gene Ontology:
- GO:0004842 — enables — ubiquitin-protein transferase activity
- GO:0005634 — located in — nucleus
Function-related keywords:
Literature:
- Evolutionary Diversity and Function of Metacaspases in Plants: Similar to but Not Caspases. DOI: 10.3390/ijms23094588 ; PMID: 35562978
- Biosynthesis of cellulose-enriched tension wood in Populus: global analysis of transcripts and metabolites identifies biochemical and developmental regulators in secondary wall biosynthesis. DOI: 10.1111/j.1365-313X.2005.02584.x ; PMID: 16367961
- Transcriptional program controlled by the floral homeotic gene AGAMOUS during early organogenesis. DOI: 10.1242/dev.01600 ; PMID: 15634696
Sequences:
cDNA Sequence
- >AT1G01670.1
CGTGTCGTAACCTGAATCGTTAAACTCCACGATTATTTCTCGAGGAAAAAACTTTTGCTCAGTAGTCTGTTGACTTCTTCACTGGCTCCACCTCATAGAATTGCTCTTCTTCAGCTCTCCGGCTAATTGAACGGCGGTTGATCGGACATTATTGGTCTGAAAATCGGATATAGAACAGTAAGCGAAGACGTTGATCAAAGTAGATTGACTTTGTTATGGGCTTTGAAGACTCTTCGAGCGAAAAAGCTTCACCTTCTCCATGTTCATCAGCTCATTTCCATGACCCCTTCATCAAGTGGGCTGGAACAAAGCGAGATCGATGCAATCCAGGAGTTGGAACAGACTAGTAGAAATGATACCCTTCTCAAGTATCATGATATCTGCATAGATGAAGGAGTTATTGAACAAGATGTGGATATGTCATGTTTTTCAGCAAATAGTGTGGGGGAATGGATTGTGGAACTTATCTATCAAAACAATATCAAGAAGCTTATCATGGGAGCAACTGCTGATTCACACTACTCCGAGGGCATGGTTCATATCACACCTACAAAAGCTGACTACGTGATTCAACATGCGCCCCATTGCTGTAACATATGGCTTGTATGTAATGGAAATCTCATCCAAACGAGGGAGGGACGGTTCGAACATGCAGGTTCAGCGTACTCATCCTCAAGCAGCCTTCATAGCATTGATTCTGCTCTGATACCATATGGGGGTGCAGGAAGAGCTGAACGTGTTACCGAGCCACATGCCTTGTCATCATCTGAAGAACAATCAGCTAGAGGGATTGAGAAAATGTATTACGAGGAGCAGAGACGGAGATTGGAAATTGAGGAATTAAAGAGAGAGAAGGAGCAGCGCGATAAGATGAGGCGTGTAAGAGAGGAAGCACTCTCAAGTTCTTCTGGTGTCACTAAGATACTGTACAATGAAGAAGTAATGCGCAGGAGAGAAGTGGAGGCGGAACTAAACAGAGCAAAAGCAGAAATAGAAGATATGAAAAGGGTCCAAATTGAACTTAAAGAACAGCATTATGCTGATTGCCGTCTGTTAGAGAAAGAGCGAGACGAAGCTATCAAGACAACTGAAGAGCTTTTAAGAGCTTTGGAGAAGGGTGAGTCATCAATCCCGTTGCAGTGGTCTGTTTCCATCGAGCCTCCCCAATGTTTCATATGTCCCATTTCAAAGGATATTATGCAAAATCCTCATGTTGCAGCCGATGGTTACACCTATGAAGCAGATGAGTTCAGAAGATGGCTCAATCACGGAGGTGAAAAATCACCAATGACAAATCTTAGGCTCGAGAATCGCAATCTCATCCCGAATCTTGTTCTTCGTTCCGCCATTAAAGACTGGTTGCAACAGCATCCATAATTCTGTGATTATTAGTATTAGGATAAATGTGGTGTTAATCGTGCTGTGATTCATTGAATTTGTTTGTGAAAAATCTAATAAAAAGTCCTTTATTCACTGGAAAAAAGTGCCGTTTCTTGTTTAGTATTTTTATGCATTGACTTGTATTTTAATTGCCACACATTGACTTTACTGTGTCTCCCTCACGAAACCTGAAGCGGTCAACAAGAAGAACATTGAGGGTCACCACT - >AT1G01670.3
CGTGTCGTAACCTGAATCGTTAAACTCCACGATTATTTCTCGAGGAAAAAACTTTTGCTCAGTAGTCTGTTGACTTCTTCACTGGCTCCACCTCATAGAATTGCTCTTCTTCAGCTCTCCGGCTAATTGAACGGCGGTTGATCGGACATTATTGGTCTGAAAATCGGATATAGAACAGTAAGCGAAGACGTTGATCAAAGTAGATTGACTTTGTTATGGGCTTTGAAGACTCTTCGAGCGAAAAAGCTTCACCTTCTCCATGTTCATCAGCTCATTTCCATGACCCCTTCATCAAGTGGGCTGGAACAAAGCGAGATCGATGCAATCCAGGAGTTGGAACAGACTAGTAGAAATGATACCCTTCTCAAGTATCATGATATCTGCATAGATGAAGGAGTTATTGAACAAGATGTGGATATGTCATGTTTTTCAGCAAATAGTGTGGGGGAATGGATTGTGGAACTTATCTATCAAAACAATATCAAGAAGCTTATCATGGGAGCAACTGCTGATTCACACTACTCCGAGGGCATGGTTCATATCACACCTACAAAAGCTGACTACGTGATTCAACATGCGCCCCATTGCTGTAACATATGGCTTGTATGTAATGGAAATCTCATCCAAACGAGGGAGGGACGGTTCGAACATGCAGGTTCAGCGTACTCATCCTCAAGCAGCCTTCATAGCATTGATTCTGCTCTGATACCATATGGGGGTGCAGGAAGAGCTGAACGTGTTACCGAGCCACATGCCTTGTCATCATCTGAAGAACAATCAGCTAGAGGGATTGAGAAAATGTATTACGAGGAGCAGAGACGGAGATTGGAAATTGAGGAATTAAAGAGAGAGAAGGAGCAGCGCGATAAGATGAGGCGTGTAAGAGAGGAAGCACTCTCAAGTTCTTCTGGTGTCACTAAGATACTGTACAATGAAGAAGTAATGCGCAGGAGAGAAGTGGAGGCGGAACTAAACAGAGCAAAAGCAGAAATAGAAGATATGAAAAGGGTCCAAATTGAACTTAAAGAACAGCATTATGCTGATTGCCGTCTGTTAGAGAAAGAGCGAGACGAAGCTATCAAGACAACTGAAGAGCTTTTAAGAGCTTTGGAGAAGGGTGAGTCATCAATCCCGTTGCAGTGGTCTGTTTCCATCGAGCCTCCCCAATGTTTCATATGTCCCATTTCAAAGGATATTATGCAAAATCCTCATGTTGCAGCCGATGGTTACACCTATGAAGCAGATGAGTTCAGAAGATGGCTCAATCACGGAGGTGAAAAATCACCAATGACAAATCTTAGGCTCGAGAATCGCAATCTCATCCCGAATCTTGTTCTTCGTTCCGCCATTAAAGACTGGTTGCAACAGCATCCATAATTCTGTGATTATTAGTATTAGGATAAATGTGGTGTTAATCGTGCTGTGATTCATTGAATTTGTTTGTGAAAAATCTAATAAAAAGTCCTTTATTCACTGGAAAAAAGTGCCGTTTCTTGTTTAGTATTTTTATGCATTGACTTGTATTTTAATTGCCACACATTGACTTTACTGTGTCTCCCTCACGAAACCTGAAGCGGTCAACAAGAAGAACATTGAGGGTCACCACT - >AT1G01670.2
CGTGTCGTAACCTGAATCGTTAAACTCCACGATTATTTCTCGAGGAAAAAACTTTTGCTCAGTAGTCTGTTGACTTCTTCACTGGCTCCACCTCATAGAATTGCTCTTCTTCAGCTCTCCGGCTAATTGAACGGCGGTTGATCGGACATTATTGGTCTGAAAATCGGATATAGAACAGTAAGCGAAGACGTTGATCAAAGTAGATTGACTTTGTTATGGGCTTTGAAGACTCTTCGAGCGAAAAAGCTTCACCTTCTCCATGTTCATCAGCTCATTTCCATGACCCCTTCATCAAGTGGGCTGGAACAAAGCGAGATCGATGCAATCCAGGAGTTGGAACAGACTAGTAGAAATGATACCCTTCTCAAGTATCATGATATCTGCATAGATGAAGGAGTTATTGAACAAGATGTGGATATGTCATGTTTTTCAGCAAATAGTGTGGGGGAATGGATTGTGGAACTTATCTATCAAAACAATATCAAGAAGCTTATCATGGGAGCAACTGCTGATTCACACTACTCCGAGGGCATGGTTCATATCACACCTACAAAAGCTGACTACGTGATTCAACATGCGCCCCATTGCTGTAACATATGGCTTGTATGTAATGGAAATCTCATCCAAACGAGGGAGGGACGGTTCGAACATGCAGGTTCAGCGTACTCATCCTCAAGCAGCCTTCATAGCATTGATTCTGCTCTGATACCATATGGGGGTGCAGGAAGAGCTGAACGTGTTACCGAGCCACATGCCTTGTCATCATCTGAAGAACAATCAGCTAGAGGGATTGAGAAAATGTATTACGAGGAGCAGAGACGGAGATTGGAAATTGAGGAATTAAAGAGAGAGAAGGAGCAGCGCGATAAGATGAGGCGTGTAAGAGAGGAAGCACTCTCAAGTTCTTCTGGTGTCACTAAGATACTGTACAATGAAGAAGTAATGCGCAGGAGAGAAGTGGAGGCGGAACTAAACAGAGCAAAAGCAGAAATAGAAGATATGAAAAGGGTCCAAATTGAACTTAAAGAACAGCATTATGCTGATTGCCGTCTGTTAGAGAAAGAGCGAGACGAAGCTATCAAGACAACTGAAGAGCTTTTAAGAGCTTTGGAGAAGGGTGAGTCATCAATCCCGTTGCAGTGGTCTGTTTCCATCGAGCCTCCCCAATGTTTCATATGTCCCATTTCAAAGGATATTATGCAAAATCCTCATGTTGCAGCCGATGGTTACACCTATGAAGCAGATGAGTTCAGAAGATGGCTCAATCACGGAGGTGAAAAATCACCAATGACAAATCTTAGGCTCGAGAATCGCAATCTCATCCCGAATCTTGTTCTTCGTTCCGCCATTAAAGACTGGTTGCAACAGCATCCATAATTCTGTGATTATTAGTATTAGGATAAATGTGGTGTTAATCGTGCTGTGATTCATTGAATTTGTTTGTGAAAAATCTAATAAAAAGTCCTTTATTCACTGGAAAAAAGTGCCGTTTCTTGTTTAGTATTTTTATGCATTGACTTGTATTTTAATTGCCACACATTGACTTTACTGTGTCTCCCTCACGAAACCTGAAGCGGTCAACAAGAAGAACATTGAGGGTCACCACT
CDS Sequence
- >AT1G01670.1
ATGACCCCTTCATCAAGTGGGCTGGAACAAAGCGAGATCGATGCAATCCAGGAGTTGGAACAGACTAGTAGAAATGATACCCTTCTCAAGTATCATGATATCTGCATAGATGAAGGAGTTATTGAACAAGATGTGGATATGTCATGTTTTTCAGCAAATAGTGTGGGGGAATGGATTGTGGAACTTATCTATCAAAACAATATCAAGAAGCTTATCATGGGAGCAACTGCTGATTCACACTACTCCGAGGGCATGGTTCATATCACACCTACAAAAGCTGACTACGTGATTCAACATGCGCCCCATTGCTGTAACATATGGCTTGTATGTAATGGAAATCTCATCCAAACGAGGGAGGGACGGTTCGAACATGCAGGTTCAGCGTACTCATCCTCAAGCAGCCTTCATAGCATTGATTCTGCTCTGATACCATATGGGGGTGCAGGAAGAGCTGAACGTGTTACCGAGCCACATGCCTTGTCATCATCTGAAGAACAATCAGCTAGAGGGATTGAGAAAATGTATTACGAGGAGCAGAGACGGAGATTGGAAATTGAGGAATTAAAGAGAGAGAAGGAGCAGCGCGATAAGATGAGGCGTGTAAGAGAGGAAGCACTCTCAAGTTCTTCTGGTGTCACTAAGATACTGTACAATGAAGAAGTAATGCGCAGGAGAGAAGTGGAGGCGGAACTAAACAGAGCAAAAGCAGAAATAGAAGATATGAAAAGGGTCCAAATTGAACTTAAAGAACAGCATTATGCTGATTGCCGTCTGTTAGAGAAAGAGCGAGACGAAGCTATCAAGACAACTGAAGAGCTTTTAAGAGCTTTGGAGAAGGGTGAGTCATCAATCCCGTTGCAGTGGTCTGTTTCCATCGAGCCTCCCCAATGTTTCATATGTCCCATTTCAAAGGATATTATGCAAAATCCTCATGTTGCAGCCGATGGTTACACCTATGAAGCAGATGAGTTCAGAAGATGGCTCAATCACGGAGGTGAAAAATCACCAATGACAAATCTTAGGCTCGAGAATCGCAATCTCATCCCGAATCTTGTTCTTCGTTCCGCCATTAAAGACTGGTTGCAACAGCATCCATAA - >AT1G01670.3
ATGACCCCTTCATCAAGTGGGCTGGAACAAAGCGAGATCGATGCAATCCAGGAGTTGGAACAGACTAGTAGAAATGATACCCTTCTCAAGTATCATGATATCTGCATAGATGAAGGAGTTATTGAACAAGATGTGGATATGTCATGTTTTTCAGCAAATAGTGTGGGGGAATGGATTGTGGAACTTATCTATCAAAACAATATCAAGAAGCTTATCATGGGAGCAACTGCTGATTCACACTACTCCGAGGGCATGGTTCATATCACACCTACAAAAGCTGACTACGTGATTCAACATGCGCCCCATTGCTGTAACATATGGCTTGTATGTAATGGAAATCTCATCCAAACGAGGGAGGGACGGTTCGAACATGCAGGTTCAGCGTACTCATCCTCAAGCAGCCTTCATAGCATTGATTCTGCTCTGATACCATATGGGGGTGCAGGAAGAGCTGAACGTGTTACCGAGCCACATGCCTTGTCATCATCTGAAGAACAATCAGCTAGAGGGATTGAGAAAATGTATTACGAGGAGCAGAGACGGAGATTGGAAATTGAGGAATTAAAGAGAGAGAAGGAGCAGCGCGATAAGATGAGGCGTGTAAGAGAGGAAGCACTCTCAAGTTCTTCTGGTGTCACTAAGATACTGTACAATGAAGAAGTAATGCGCAGGAGAGAAGTGGAGGCGGAACTAAACAGAGCAAAAGCAGAAATAGAAGATATGAAAAGGGTCCAAATTGAACTTAAAGAACAGCATTATGCTGATTGCCGTCTGTTAGAGAAAGAGCGAGACGAAGCTATCAAGACAACTGAAGAGCTTTTAAGAGCTTTGGAGAAGGGTGAGTCATCAATCCCGTTGCAGTGGTCTGTTTCCATCGAGCCTCCCCAATGTTTCATATGTCCCATTTCAAAGGATATTATGCAAAATCCTCATGTTGCAGCCGATGGTTACACCTATGAAGCAGATGAGTTCAGAAGATGGCTCAATCACGGAGGTGAAAAATCACCAATGACAAATCTTAGGCTCGAGAATCGCAATCTCATCCCGAATCTTGTTCTTCGTTCCGCCATTAAAGACTGGTTGCAACAGCATCCATAA - >AT1G01670.2
ATGACCCCTTCATCAAGTGGGCTGGAACAAAGCGAGATCGATGCAATCCAGGAGTTGGAACAGACTAGTAGAAATGATACCCTTCTCAAGTATCATGATATCTGCATAGATGAAGGAGTTATTGAACAAGATGTGGATATGTCATGTTTTTCAGCAAATAGTGTGGGGGAATGGATTGTGGAACTTATCTATCAAAACAATATCAAGAAGCTTATCATGGGAGCAACTGCTGATTCACACTACTCCGAGGGCATGGTTCATATCACACCTACAAAAGCTGACTACGTGATTCAACATGCGCCCCATTGCTGTAACATATGGCTTGTATGTAATGGAAATCTCATCCAAACGAGGGAGGGACGGTTCGAACATGCAGGTTCAGCGTACTCATCCTCAAGCAGCCTTCATAGCATTGATTCTGCTCTGATACCATATGGGGGTGCAGGAAGAGCTGAACGTGTTACCGAGCCACATGCCTTGTCATCATCTGAAGAACAATCAGCTAGAGGGATTGAGAAAATGTATTACGAGGAGCAGAGACGGAGATTGGAAATTGAGGAATTAAAGAGAGAGAAGGAGCAGCGCGATAAGATGAGGCGTGTAAGAGAGGAAGCACTCTCAAGTTCTTCTGGTGTCACTAAGATACTGTACAATGAAGAAGTAATGCGCAGGAGAGAAGTGGAGGCGGAACTAAACAGAGCAAAAGCAGAAATAGAAGATATGAAAAGGGTCCAAATTGAACTTAAAGAACAGCATTATGCTGATTGCCGTCTGTTAGAGAAAGAGCGAGACGAAGCTATCAAGACAACTGAAGAGCTTTTAAGAGCTTTGGAGAAGGGTGAGTCATCAATCCCGTTGCAGTGGTCTGTTTCCATCGAGCCTCCCCAATGTTTCATATGTCCCATTTCAAAGGATATTATGCAAAATCCTCATGTTGCAGCCGATGGTTACACCTATGAAGCAGATGAGTTCAGAAGATGGCTCAATCACGGAGGTGAAAAATCACCAATGACAAATCTTAGGCTCGAGAATCGCAATCTCATCCCGAATCTTGTTCTTCGTTCCGCCATTAAAGACTGGTTGCAACAGCATCCATAA
Protein Sequence
- >AT1G01670.1
MTPSSSGLEQSEIDAIQELEQTSRNDTLLKYHDICIDEGVIEQDVDMSCFSANSVGEWIVELIYQNNIKKLIMGATADSHYSEGMVHITPTKADYVIQHAPHCCNIWLVCNGNLIQTREGRFEHAGSAYSSSSSLHSIDSALIPYGGAGRAERVTEPHALSSSEEQSARGIEKMYYEEQRRRLEIEELKREKEQRDKMRRVREEALSSSSGVTKILYNEEVMRRREVEAELNRAKAEIEDMKRVQIELKEQHYADCRLLEKERDEAIKTTEELLRALEKGESSIPLQWSVSIEPPQCFICPISKDIMQNPHVAADGYTYEADEFRRWLNHGGEKSPMTNLRLENRNLIPNLVLRSAIKDWLQQHP - >AT1G01670.3
MTPSSSGLEQSEIDAIQELEQTSRNDTLLKYHDICIDEGVIEQDVDMSCFSANSVGEWIVELIYQNNIKKLIMGATADSHYSEGMVHITPTKADYVIQHAPHCCNIWLVCNGNLIQTREGRFEHAGSAYSSSSSLHSIDSALIPYGGAGRAERVTEPHALSSSEEQSARGIEKMYYEEQRRRLEIEELKREKEQRDKMRRVREEALSSSSGVTKILYNEEVMRRREVEAELNRAKAEIEDMKRVQIELKEQHYADCRLLEKERDEAIKTTEELLRALEKGESSIPLQWSVSIEPPQCFICPISKDIMQNPHVAADGYTYEADEFRRWLNHGGEKSPMTNLRLENRNLIPNLVLRSAIKDWLQQHP - >AT1G01670.2
MTPSSSGLEQSEIDAIQELEQTSRNDTLLKYHDICIDEGVIEQDVDMSCFSANSVGEWIVELIYQNNIKKLIMGATADSHYSEGMVHITPTKADYVIQHAPHCCNIWLVCNGNLIQTREGRFEHAGSAYSSSSSLHSIDSALIPYGGAGRAERVTEPHALSSSEEQSARGIEKMYYEEQRRRLEIEELKREKEQRDKMRRVREEALSSSSGVTKILYNEEVMRRREVEAELNRAKAEIEDMKRVQIELKEQHYADCRLLEKERDEAIKTTEELLRALEKGESSIPLQWSVSIEPPQCFICPISKDIMQNPHVAADGYTYEADEFRRWLNHGGEKSPMTNLRLENRNLIPNLVLRSAIKDWLQQHP