Gene Details:

• Gene ID: AT1G01060
• Gene Symbol: LHY, LHY1
• Gene Name: LATE ELONGATED HYPOCOTYL, LATE ELONGATED HYPOCOTYL 1
• Description: Homeodomain-like superfamily protein;(source:Araport11)
• TAIR Accession: locus:2200970
• Genome: Araport11_genome_release
• Species: Arabidopsis thaliana

Transcripts:

• AT1G01060.1     AT1G01060.2     AT1G01060.3     AT1G01060.4     AT1G01060.5     AT1G01060.6     AT1G01060.7     AT1G01060.8

Plant Ontology Annotations:

• PO:0000013  — cauline leaf — hoja caulinar (Spanish, exact), 茎生葉、茎葉 (Japanese, exact)
• PO:0000230  — inflorescence meristem — meristema de la inflorescencia (Spanish, exact), 花序分裂組織 (Japanese, exact)
• PO:0009010  — seed — semilla (Spanish, exact), 種子 (Japanese, exact), pyrene (narrow), diaspore (broad)
• PO:0009030  — carpel — carpelo (Spanish, exact), 心皮 (Japanese, exact), Poaceae carpel (narrow), Zea carpel (narrow), pistil (broad)
• PO:0009032  — petal — pétalo (Spanish, exact), 花弁 (Japanese, exact)
• PO:0009047  — stem — caña (Spanish, exact), culm (exact), eje primario (Spanish, exact), primary axis (exact), primary stem (exact), tallo (Spanish, exact), tronco (Spanish, exact), 茎 (Japanese, exact), bole (narrow), cane (narrow), caudex (narrow), caudices (narrow), core (narrow), primocane (narrow), scape (narrow), stalk (narrow), trunk (narrow)
• PO:0025281  — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
• PO:0000293  — guard cell — célula guardiana (Spanish, exact), occlusive cell (exact), 孔辺細胞 (Japanese, exact)

Gene Ontology:

• GO:0006355  — acts upstream of or within — regulation of DNA-templated transcription
• GO:0009409  — acts upstream of or within — response to cold
• GO:0000976  — enables — transcription cis-regulatory region binding
• GO:0007623  — acts upstream of or within — circadian rhythm
• GO:0042754  — acts upstream of or within — negative regulation of circadian rhythm
• GO:0005634  — located in — nucleus
• GO:0043433  — involved in — negative regulation of DNA-binding transcription factor activity
• GO:0048574  — acts upstream of or within — long-day photoperiodism, flowering
• GO:0042752  — involved in — regulation of circadian rhythm
• GO:0003700  — enables — DNA-binding transcription factor activity

Germplasm Phenotype:

• CS2107351  — The lhy, cca1 double mutants severely affect flowering time, light responses and circadian rhythms
• CS2107352  — The lhy, cca, gi triple mutants severely affect flowering time, light responses and circadian rhythms
• CS2107353  — The lhy, cca1 double mutants severely affect flowering time, light responses and circadian rhythms
• CS2107354  — The lhy, cca, gi triple mutants severely affect flowering time, light responses and circadian rhythms
• CS2107360  — long hypocotyl, early flowering
• CS2107364  — The lhy, cca1 double mutants severely affect flowering time, light responses and circadian rhythms
• CS2107365  — The lhy, cca1 double mutants severely affect flowering time, light responses and circadian rhythms
• CS2107366  — The lhy, cca1 double mutants severely affect flowering time, light responses and circadian rhythms
• CS2107367  — The lhy, cca1 double mutants severely affect flowering time, light responses and circadian rhythms
• CS2107368  — The lhy, cca1 double mutants severely affect flowering time, light responses and circadian rhythms
• CS9379  — Altered circadian regulation; expression patterns of mRNA have a diurnal rhythm in plants grown in light/dark cycles, with peak levels occurring at dawn; when moved to constant light or constant dark conditions, plants express the gene in a circadian rhythm
• CS9380  — Late elongated hypocotyl and circadian clock-associated double mutant.
• CS9809  — double mutant severely affects flowering time, light responses and circadian rhythm
• CS9810  — double mutant severely affects flowering time, light responses and circadian rhythm
• CS9811  — double mutant severely affects flowering time, light responses and circadian rhythm
• CS9812  — double mutant severely affects flowering time, light responses and circadian rhythm
• lhy-101  — The mutant plants are hypersensitive to both FRc and Rc light treatments in hypocotyl elongation and exhibits a small reciprocal enlargement in cotyledon area, albeit not statistically significant.

Function-related keywords:

• cauline leaf ,  inflorescence meristem ,  seed ,  carpel ,  petal ,  stem ,  pollen ,  guard cell

Literature:

• Distinct roles of GIGANTEA in promoting flowering and regulating circadian rhythms in Arabidopsis.   DOI:  10.1105/tpc.105.033464 ;  PMID:  16006578
• ELF4 is a phytochrome-regulated component of a negative-feedback loop involving the central oscillator components CCA1 and LHY.   DOI:  10.1111/j.1365-313X.2005.02531.x ;  PMID:  16212608
• The MYB transcription factor superfamily of Arabidopsis: expression analysis and phylogenetic comparison with the rice MYB family.   DOI:  10.1007/s11103-005-2910-y ;  PMID:  16463103
• Conserved expression profiles of circadian clock-related genes in two Lemna species showing long-day and short-day photoperiodic flowering responses.   DOI:  10.1093/pcp/pcj027 ;  PMID:  16524874
• The molecular basis of temperature compensation in the Arabidopsis circadian clock.   DOI:  10.1105/tpc.105.039990 ;  PMID:  16617099
• Comparative overviews of clock-associated genes of Arabidopsis thaliana and Oryza sativa.   DOI:  10.1093/pcp/pcl043 ;  PMID:  17132630
• Circadian rhythms of isoprene biosynthesis in grey poplar leaves.   DOI:  10.1104/pp.106.092759 ;  PMID:  17122071
• GIGANTEA acts in blue light signaling and has biochemically separable roles in circadian clock and flowering time regulation.   DOI:  10.1104/pp.106.088757 ;  PMID:  17098855
• Multifocal two-photon laser scanning microscopy combined with photo-activatable GFP for in vivo monitoring of intracellular protein dynamics in real time.   DOI:  10.1016/j.jsb.2006.12.012 ;  PMID:  17363273
• Pea LATE BLOOMER1 is a GIGANTEA ortholog with roles in photoperiodic flowering, deetiolation, and transcriptional regulation of circadian clock gene homologs.   DOI:  10.1104/pp.107.096818 ;  PMID:  17468223
• Genetic linkages between circadian clock-associated components and phytochrome-dependent red light signal transduction in Arabidopsis thaliana.   DOI:  10.1093/pcp/pcm063 ;  PMID:  17519251
• Arabidopsis clock-associated pseudo-response regulators PRR9, PRR7 and PRR5 coordinately and positively regulate flowering time through the canonical CONSTANS-dependent photoperiodic pathway.   DOI:  10.1093/pcp/pcm056 ;  PMID:  17504813
• TIME FOR COFFEE encodes a nuclear regulator in the Arabidopsis thaliana circadian clock.   DOI:  10.1105/tpc.106.047241 ;  PMID:  17496120
• A complex genetic interaction between Arabidopsis thaliana TOC1 and CCA1/LHY in driving the circadian clock and in output regulation.   DOI:  10.1534/genetics.107.072769 ;  PMID:  17483414
• Constitutive expression of CIR1 (RVE2) affects several circadian-regulated processes and seed germination in Arabidopsis.   DOI:  10.1111/j.1365-313X.2007.03156.x ;  PMID:  17587236
• Genetic linkages of the circadian clock-associated genes, TOC1, CCA1 and LHY, in the photoperiodic control of flowering time in Arabidopsis thaliana.   DOI:  10.1093/pcp/pcm067 ;  PMID:  17540692
• A functional link between rhythmic changes in chromatin structure and the Arabidopsis biological clock.   DOI:  10.1105/tpc.107.050807 ;  PMID:  17616736
• PRR7 protein levels are regulated by light and the circadian clock in Arabidopsis.   DOI:  10.1111/j.1365-313X.2007.03258.x ;  PMID:  17877705
• Distinct light and clock modulation of cytosolic free Ca2+ oscillations and rhythmic CHLOROPHYLL A/B BINDING PROTEIN2 promoter activity in Arabidopsis.   DOI:  10.1105/tpc.106.046011 ;  PMID:  17982000
• Functional-genomics-based identification of genes that regulate Arabidopsis responses to multiple abiotic stresses.   DOI:  10.1111/j.1365-3040.2008.01779.x ;  PMID:  18182014
• Insight into missing genetic links between two evening-expressed pseudo-response regulator genes TOC1 and PRR5 in the circadian clock-controlled circuitry in Arabidopsis thaliana.   DOI:  10.1093/pcp/pcm178 ;  PMID:  18178585
• FIONA1 is essential for regulating period length in the Arabidopsis circadian clock.   DOI:  10.1105/tpc.107.055715 ;  PMID:  18281507
• Functional conservation of clock-related genes in flowering plants: overexpression and RNA interference analyses of the circadian rhythm in the monocotyledon Lemna gibba.   DOI:  10.1104/pp.107.114611 ;  PMID:  18281417
• Circadian timekeeping during early Arabidopsis development.   DOI:  10.1104/pp.108.117622 ;  PMID:  18480377
• Analysis of clock gene homologs using unifoliolates as target organs in soybean (Glycine max).   DOI:  10.1016/j.jplph.2008.06.003 ;  PMID:  18707796
• Two new clock proteins, LWD1 and LWD2, regulate Arabidopsis photoperiodic flowering.   DOI:  10.1104/pp.108.124917 ;  PMID:  18676661
• Circadian clock proteins LHY and CCA1 regulate SVP protein accumulation to control flowering in Arabidopsis.   DOI:  10.1105/tpc.108.061531 ;  PMID:  19011118
• A genetic study of the Arabidopsis circadian clock with reference to the TIMING OF CAB EXPRESSION 1 (TOC1) gene.   DOI:  10.1093/pcp/pcn198 ;  PMID:  19098071
• The circadian clock in Arabidopsis roots is a simplified slave version of the clock in shoots.   DOI:  10.1126/science.1161403 ;  PMID:  19095940
• Testing time: can ethanol-induced pulses of proposed oscillator components phase shift rhythms in Arabidopsis?   DOI:  10.1177/0748730408326749 ;  PMID:  19060255
• CIRCADIAN CLOCK ASSOCIATED1 and LATE ELONGATED HYPOCOTYL function synergistically in the circadian clock of Arabidopsis.   DOI:  10.1104/pp.108.133272 ;  PMID:  19218364
• Extracellular invertase LIN6 of tomato: a pivotal enzyme for integration of metabolic, hormonal, and stress signals is regulated by a diurnal rhythm.   DOI:  10.1093/jxb/erp027 ;  PMID:  19297549
• A functional genomics approach reveals CHE as a component of the Arabidopsis circadian clock.   DOI:  10.1126/science.1167206 ;  PMID:  19286557
• Posttranslational regulation of CIRCADIAN CLOCK ASSOCIATED1 in the circadian oscillator of Arabidopsis.   DOI:  10.1104/pp.109.137414 ;  PMID:  19339503
• A role for multiple circadian clock genes in the response to signals that break seed dormancy in Arabidopsis.   DOI:  10.1105/tpc.108.064022 ;  PMID:  19542296
• PRR5 (PSEUDO-RESPONSE REGULATOR 5) plays antagonistic roles to CCA1 (CIRCADIAN CLOCK-ASSOCIATED 1) in Arabidopsis thaliana.   DOI:  10.1271/bbb.69.426 ;  PMID:  15725674
• DET1 regulates the proteasomal degradation of LHY, a component of the Arabidopsis circadian clock.   DOI:  10.1007/s11103-005-3096-z ;  PMID:  15988568
• Extension of a genetic network model by iterative experimentation and mathematical analysis.   DOI:  10.1038/msb4100018 ;  PMID:  16729048
• RFI2, a RING-domain zinc finger protein, negatively regulates CONSTANS expression and photoperiodic flowering.   DOI:  10.1111/j.1365-313X.2006.02740.x ;  PMID:  16709197
• Experimental validation of a predicted feedback loop in the multi-oscillator clock of Arabidopsis thaliana.   DOI:  10.1038/msb4100102 ;  PMID:  17102804
• The function of the clock-associated transcriptional regulator CCA1 (CIRCADIAN CLOCK-ASSOCIATED 1) in Arabidopsis thaliana.   DOI:  10.1271/bbb.70804 ;  PMID:  18460819
• Altered circadian rhythms regulate growth vigour in hybrids and allopolyploids.   DOI:  10.1038/nature07523 ;  PMID:  19029881
• Molecular phylogeny and expression of poplar circadian clock genes, LHY1 and LHY2.   DOI:  10.1111/j.1469-8137.2008.02714.x ;  PMID:  19140936
• Possible role of early flowering 3 (ELF3) in clock-dependent floral regulation by short vegetative phase (SVP) in Arabidopsis thaliana.   DOI:  10.1111/j.1469-8137.2009.02809.x ;  PMID:  19383102
• PIF3 is a repressor of chloroplast development.   DOI:  10.1073/pnas.0811684106 ;  PMID:  19380736
• Functional characterization of CCA1/LHY homolog genes, PpCCA1a and PpCCA1b, in the moss Physcomitrella patens.   DOI:  10.1111/j.1365-313X.2009.03979.x ;  PMID:  19624471
• DIE NEUTRALIS and LATE BLOOMER 1 contribute to regulation of the pea circadian clock.   DOI:  10.1105/tpc.109.067223 ;  PMID:  19843842
• Linkage between circadian clock and tricarboxylic acid cycle in Arabidopsis.   DOI:  10.1073/pnas.0900952106 ;  PMID:  19820331
• REVEILLE1, a Myb-like transcription factor, integrates the circadian clock and auxin pathways.   DOI:  10.1073/pnas.0813035106 ;  PMID:  19805390
• Evolutionarily conserved regulatory motifs in the promoter of the Arabidopsis clock gene LATE ELONGATED HYPOCOTYL.   DOI:  10.1105/tpc.109.069898 ;  PMID:  19789276
• Photoperiod-dependent regulation of cell growth by PpCCA1a and PpCCA1b genes encoding single-myb clock proteins in the moss Physcomitrella patens.   DOI:  10.1266/ggs.84.379 ;  PMID:  20154425
• The 5'UTR of CCA1 includes an autoregulatory cis element that segregates between light and circadian regulation of CCA1 and LHY.   DOI:  10.1007/s11103-010-9605-8 ;  PMID:  20119844
• Deregulated copper transport affects Arabidopsis development especially in the absence of environmental cycles.   DOI:  10.1104/pp.110.153676 ;  PMID:  20335405
• PSEUDO-RESPONSE REGULATORS 9, 7, and 5 are transcriptional repressors in the Arabidopsis circadian clock.   DOI:  10.1105/tpc.109.072892 ;  PMID:  20233950
• F-box proteins FKF1 and LKP2 act in concert with ZEITLUPE to control Arabidopsis clock progression.   DOI:  10.1105/tpc.109.072843 ;  PMID:  20354196
• Circadian control of carbohydrate availability for growth in Arabidopsis plants at night.   DOI:  10.1073/pnas.0914299107 ;  PMID:  20439704
• Phylogenetic footprint of the plant clock system in angiosperms: evolutionary processes of pseudo-response regulators.   DOI:  10.1186/1471-2148-10-126 ;  PMID:  20433765
• Ubiquitination of LHY by SINAT5 regulates flowering time and is inhibited by DET1.   DOI:  10.1016/j.bbrc.2010.06.067 ;  PMID:  20599732
• The role of the Arabidopsis morning loop components CCA1, LHY, PRR7, and PRR9 in temperature compensation.   DOI:  10.1105/tpc.110.079087 ;  PMID:  21098730
• TCP transcription factors link the regulation of genes encoding mitochondrial proteins with the circadian clock in Arabidopsis thaliana.   DOI:  10.1105/tpc.110.074518 ;  PMID:  21183706
• The Jumonji C domain-containing protein JMJ30 regulates period length in the Arabidopsis circadian clock.   DOI:  10.1104/pp.110.167015 ;  PMID:  21139085
• Functional implication of the MYB transcription factor RVE8/LCL5 in the circadian control of histone acetylation.   DOI:  10.1111/j.1365-313X.2011.04484.x ;  PMID:  21205033
• Circadian regulation of chloroplastic f and m thioredoxins through control of the CCA1 transcription factor.   DOI:  10.1093/jxb/erq394 ;  PMID:  21196476
• Temporal repression of core circadian genes is mediated through EARLY FLOWERING 3 in Arabidopsis.   DOI:  10.1016/j.cub.2010.12.013 ;  PMID:  21236675
• A genetic screen for leaf movement mutants identifies a potential role for AGAMOUS-LIKE 6 (AGL6) in circadian-clock control.   DOI:  10.1007/s10059-011-0035-5 ;  PMID:  21331777
• Double loss-of-function mutation in EARLY FLOWERING 3 and CRYPTOCHROME 2 genes delays flowering under continuous light but accelerates it under long days and short days: an important role for Arabidopsis CRY2 to accelerate flowering time in continuous light.   DOI:  10.1093/jxb/erq450 ;  PMID:  21296763
• BROTHER OF LUX ARRHYTHMO is a component of the Arabidopsis circadian clock.   DOI:  10.1105/tpc.111.084293 ;  PMID:  21447790
• Circadian clock parameter measurement: characterization of clock transcription factors using surface plasmon resonance.   DOI:  10.1177/0748730410397465 ;  PMID:  21454289
• Coordinated transcriptional regulation underlying the circadian clock in Arabidopsis.   DOI:  10.1038/ncb2219 ;  PMID:  21499259
• REVEILLE8 and PSEUDO-REPONSE REGULATOR5 form a negative feedback loop within the Arabidopsis circadian clock.   DOI:  10.1371/journal.pgen.1001350 ;  PMID:  21483796
• Circadian clock-associated 1 and late elongated hypocotyl regulate expression of the C-repeat binding factor (CBF) pathway in Arabidopsis.   DOI:  10.1073/pnas.1103741108 ;  PMID:  21471455
• Repression of shade-avoidance reactions by sunfleck induction of HY5 expression in Arabidopsis.   DOI:  10.1111/j.1365-313X.2011.04745.x ;  PMID:  21848684
• Suppression of late-flowering and semi-dwarf phenotypes in the Arabidopsis clock mutant lhy-12;cca1-101 by phyB under continuous light.   DOI:  10.4161/psb.6.8.16361 ;  PMID:  21822060
• Interaction of Arabidopsis DET1 with CCA1 and LHY in mediating transcriptional repression in the plant circadian clock.   DOI:  10.1016/j.molcel.2011.07.013 ;  PMID:  21884973
• The photomorphogenic protein, DE-ETIOLATED 1, is a critical transcriptional corepressor in the central loop of the Arabidopsis circadian clock.   DOI:  10.1016/j.molcel.2011.08.013 ;  PMID:  21884969
• Does CK2 affect flowering time by modulating the autonomous pathway in Arabidopsis?   DOI:  10.4161/psb.18883 ;  PMID:  22353866
• Arabidopsis circadian clock protein, TOC1, is a DNA-binding transcription factor.   DOI:  10.1073/pnas.1200355109 ;  PMID:  22315425
• Diurnal dependence of growth responses to shade in Arabidopsis: role of hormone, clock, and light signaling.   DOI:  10.1093/mp/ssr122 ;  PMID:  22311777
• Alternative splicing mediates responses of the Arabidopsis circadian clock to temperature changes.   DOI:  10.1105/tpc.111.093948 ;  PMID:  22408072
• The clock gene circuit in Arabidopsis includes a repressilator with additional feedback loops.   DOI:  10.1038/msb.2012.6 ;  PMID:  22395476
• A self-regulatory circuit of CIRCADIAN CLOCK-ASSOCIATED1 underlies the circadian clock regulation of temperature responses in Arabidopsis.   DOI:  10.1105/tpc.112.098723 ;  PMID:  22715042
• Targeted inactivation of transcription factors by overexpression of their truncated forms in plants.   DOI:  10.1111/j.1365-313X.2012.05069.x ;  PMID:  22672153
• CCA1 alternative splicing as a way of linking the circadian clock to temperature response in Arabidopsis.   DOI:  10.4161/psb.21300 ;  PMID:  22899064
• Rhythmic oscillation of histone acetylation and methylation at the Arabidopsis central clock loci.   DOI:  10.1007/s10059-012-0103-5 ;  PMID:  22878891
• Identification and characterization of circadian clock genes in a native tobacco, Nicotiana attenuata.   DOI:  10.1186/1471-2229-12-172 ;  PMID:  23006446
• Divergence of flowering genes in soybean.   DOI:  10.1007/s12038-012-9252-0 ;  PMID:  23107921
• PICARA, an analytical pipeline providing probabilistic inference about a priori candidates genes underlying genome-wide association QTL in plants.   DOI:  10.1371/journal.pone.0046596 ;  PMID:  23144785
• Circadian clock regulates dynamic chromatin modifications associated with Arabidopsis CCA1/LHY and TOC1 transcriptional rhythms.   DOI:  10.1093/pcp/pcs148 ;  PMID:  23128602
• Iron is involved in the maintenance of circadian period length in Arabidopsis.   DOI:  10.1104/pp.112.212068 ;  PMID:  23307650
• Network balance via CRY signalling controls the Arabidopsis circadian clock over ambient temperatures.   DOI:  10.1038/msb.2013.7 ;  PMID:  23511208
• A circadian clock-regulated toggle switch explains AtGRP7 and AtGRP8 oscillations in Arabidopsis thaliana.   DOI:  10.1371/journal.pcbi.1002986 ;  PMID:  23555221
• Ubiquitin-specific proteases UBP12 and UBP13 act in circadian clock and photoperiodic flowering regulation in Arabidopsis.   DOI:  10.1104/pp.112.213009 ;  PMID:  23645632
• A fast circadian clock at high temperatures is a conserved feature across Arabidopsis accessions and likely to be important for vegetative yield.   DOI:  10.1111/pce.12152 ;  PMID:  23777196
• Crosstalk between the circadian clock and innate immunity in Arabidopsis.   DOI:  10.1371/journal.ppat.1003370 ;  PMID:  23754942
• Modelling the widespread effects of TOC1 signalling on the plant circadian clock and its outputs.   DOI:  10.1186/1752-0509-7-23 ;  PMID:  23506153
• Heat shock-induced fluctuations in clock and light signaling enhance phytochrome B-mediated Arabidopsis deetiolation.   DOI:  10.1105/tpc.113.114306 ;  PMID:  23933882
• Balanced nucleocytosolic partitioning defines a spatial network to coordinate circadian physiology in plants.   DOI:  10.1016/j.devcel.2013.06.006 ;  PMID:  23830866
• The circadian clock gene regulatory module enantioselectively mediates imazethapyr-induced early flowering in Arabidopsis thaliana.   DOI:  10.1016/j.jplph.2013.11.011 ;  PMID:  24484962
• A protocol for visual analysis of alternative splicing in RNA-Seq data using integrated genome browser.   DOI:  10.1007/978-1-4939-0700-7_8 ;  PMID:  24792048
• LNK1 and LNK2 are transcriptional coactivators in the Arabidopsis circadian oscillator.   DOI:  10.1105/tpc.114.126573 ;  PMID:  25012192
• Gene expression in plant lipid metabolism in Arabidopsis seedlings.   DOI:  10.1371/journal.pone.0107372 ;  PMID:  25264899
• LNK1 and LNK2 recruitment to the evening element require morning expressed circadian related MYB-like transcription factors.   DOI:  10.1080/15592324.2015.1010888 ;  PMID:  25848708
• Phototropins maintain robust circadian oscillation of PSII operating efficiency under blue light.   DOI:  10.1111/tpj.12947 ;  PMID:  26215041
• Defining the robust behaviour of the plant clock gene circuit with absolute RNA timeseries and open infrastructure.   DOI:  10.1098/rsob.150042 ;  PMID:  26468131
• Revised Morning Loops of the Arabidopsis Circadian Clock Based on Analyses of Direct Regulatory Interactions.   DOI:  10.1371/journal.pone.0143943 ;  PMID:  26625126
• Habitat-Associated Life History and Stress-Tolerance Variation in Arabidopsis arenosa.   DOI:  10.1104/pp.15.01875 ;  PMID:  26941193
• Direct Repression of Evening Genes by CIRCADIAN CLOCK-ASSOCIATED1 in the Arabidopsis Circadian Clock.   DOI:  10.1105/tpc.15.00737 ;  PMID:  26941090
• Circadian Stress Regimes Affect the Circadian Clock and Cause Jasmonic Acid-Dependent Cell Death in Cytokinin-Deficient Arabidopsis Plants.   DOI:  10.1105/tpc.16.00016 ;  PMID:  27354555
• Circadian Oscillation of the Lettuce Transcriptome under Constant Light and Light-Dark Conditions.   DOI:  10.3389/fpls.2016.01114 ;  PMID:  27512400
• The Arabidopsis sickle Mutant Exhibits Altered Circadian Clock Responses to Cool Temperatures and Temperature-Dependent Alternative Splicing.   DOI:  10.1105/tpc.16.00223 ;  PMID:  27624757
• LWD-TCP complex activates the morning gene CCA1 in Arabidopsis.   DOI:  10.1038/ncomms13181 ;  PMID:  27734958
• Wheels within wheels: new transcriptional feedback loops in the Arabidopsis circadian clock.   DOI:  10.12703/P6-2 ;  PMID:  24592314
• Thermoperiodic Control of Floral Induction Involves Modulation of the Diurnal FLOWERING LOCUS T Expression Pattern.   DOI:  10.1093/pcp/pcw221 ;  PMID:  28028164
• LATE ELONGATED HYPOCOTYL regulates photoperiodic flowering via the circadian clock in Arabidopsis.   DOI:  10.1186/s12870-016-0810-8 ;  PMID:  27207270
• The Elongator complex regulates hypocotyl growth in darkness and during photomorphogenesis.   DOI:  10.1242/jcs.203927 ;  PMID:  28720596
• A Localized Pseudomonas syringae Infection Triggers Systemic Clock Responses in Arabidopsis.   DOI:  10.1016/j.cub.2018.01.001 ;  PMID:  29398214
• Global spatial analysis of Arabidopsis natural variants implicates 5'UTR splicing of LATE ELONGATED HYPOCOTYL in responses to temperature.   DOI:  10.1111/pce.13188 ;  PMID:  29520807
• How does temperature affect splicing events? Isoform switching of splicing factors regulates splicing of LATE ELONGATED HYPOCOTYL (LHY).   DOI:  10.1111/pce.13193 ;  PMID:  29532482
• Reduction of the geomagnetic field delays Arabidopsis thaliana flowering time through downregulation of flowering-related genes.   DOI:  10.1002/bem.22123 ;  PMID:  29709075
• Multiple feedback loops of the Arabidopsis circadian clock provide rhythmic robustness across environmental conditions.   DOI:  10.1073/pnas.1805524115 ;  PMID:  29915068
• The central circadian clock proteins CCA1 and LHY regulate iron homeostasis in Arabidopsis.   DOI:  10.1111/jipb.12696 ;  PMID:  29989313
• The Arabidopsis LDL1/2-HDA6 histone modification complex is functionally associated with CCA1/LHY in regulation of circadian clock genes.   DOI:  10.1093/nar/gky749 ;  PMID:  30124938
• Circadian control of abscisic acid biosynthesis and signalling pathways revealed by genome-wide analysis of LHY binding targets.   DOI:  10.1111/nph.15415 ;  PMID:  30191576
• Multiple circadian clock outputs regulate diel turnover of carbon and nitrogen reserves.   DOI:  10.1111/pce.13440 ;  PMID:  30184255
• An incoherent feed-forward loop switches the Arabidopsis clock rapidly between two hysteretic states.   DOI:  10.1038/s41598-018-32030-z ;  PMID:  30224713
• HSP90 Contributes to Entrainment of the Arabidopsis Circadian Clock via the Morning Loop.   DOI:  10.1534/genetics.118.301586 ;  PMID:  30337341
• Reducing the complexity of mathematical models for the plant circadian clock by distributed delays.   DOI:  10.1016/j.jtbi.2018.12.014 ;  PMID:  30550861
• Reduction of geomagnetic field (GMF) to near null magnetic field (NNMF) affects some Arabidopsis thaliana clock genes amplitude in a light independent manner.   DOI:  10.1016/j.jplph.2018.11.008 ;  PMID:  30530200
• Interaction and Regulation Between Lipid Mediator Phosphatidic Acid and Circadian Clock Regulators.   DOI:  10.1105/tpc.18.00675 ;  PMID:  30674693
• The LDL1/2-HDA6 Histone Modification Complex Interacts With TOC1 and Regulates the Core Circadian Clock Components in Arabidopsis.   DOI:  10.3389/fpls.2019.00233 ;  PMID:  30863422
• Contribution of time of day and the circadian clock to the heat stress responsive transcriptome in Arabidopsis.   DOI:  10.1038/s41598-019-41234-w ;  PMID:  30886204
• Physiological and Genetic Dissection of Sucrose Inputs to the Arabidopsis thaliana Circadian System.   DOI:  10.3390/genes10050334 ;  PMID:  31052578
• Nitrogen and nitric oxide regulate Arabidopsis flowering differently.   DOI:  10.1016/j.plantsci.2019.04.015 ;  PMID:  31084870
• A loss-of-function mutation in the DWARF4/PETANKO5 gene enhances the late-flowering and semi-dwarf phenotypes of the Arabidopsis clock mutant lhy-12;cca1-101 under continuous light without affecting FLC expression.   DOI:  10.5511/plantbiotechnology.16.0601a ;  PMID:  31274993
• Gene networks underlying the early regulation of Paraburkholderia phytofirmans PsJN induced systemic resistance in Arabidopsis.   DOI:  10.1371/journal.pone.0221358 ;  PMID:  31437216
• Diurnal regulation of SDG2 and JMJ14 by circadian clock oscillators orchestrates histone modification rhythms in Arabidopsis.   DOI:  10.1186/s13059-019-1777-1 ;  PMID:  31429787
• CCA1 and LHY contribute to nonhost resistance to Pyricularia oryzae (syn. Magnaporthe oryzae) in Arabidopsis thaliana.   DOI:  10.1080/09168451.2019.1660612 ;  PMID:  31478783
• Density effects on late flowering mutants of Arabidopsis thaliana under continuous light.   DOI:  10.5511/plantbiotechnology.16.0622a ;  PMID:  31274994
• 3,4-Dibromo-7-Azaindole Modulates Arabidopsis Circadian Clock by Inhibiting Casein Kinase 1 Activity.   DOI:  10.1093/pcp/pcz183 ;  PMID:  31529098
• A PXY-Mediated Transcriptional Network Integrates Signaling Mechanisms to Control Vascular Development in Arabidopsis.   DOI:  10.1105/tpc.19.00562 ;  PMID:  31806676
• CIRCADIAN CLOCK ASSOCIATED 1 gates morning phased auxin response in Arabidopsis thaliana.   DOI:  10.1016/j.bbrc.2020.05.049 ;  PMID:  32430181
• Photoperiod stress induces an oxidative burst-like response and is associated with increased apoplastic peroxidase and decreased catalase activities.   DOI:  10.1016/j.jplph.2020.153252 ;  PMID:  32949889
• Brassinosteroids Regulate Circadian Oscillation via the BES1/TPL-CCA1/LHY Module in Arabidopsisthaliana.   DOI:  10.1016/j.isci.2020.101528 ;  PMID:  32947126
• Recognition of CCA1 alternative protein isoforms during temperature acclimation.   DOI:  10.1007/s00299-020-02644-7 ;  PMID:  33398474
• Posttranslational regulation of multiple clock-related transcription factors triggers cold-inducible gene expression in Arabidopsis.   DOI:  10.1073/pnas.2021048118 ;  PMID:  33649234
• Circadian Clock in Arabidopsis thaliana Determines Flower Opening Time Early in the Morning and Dominantly Closes Early in the Afternoon.   DOI:  10.1093/pcp/pcab048 ;  PMID:  33822207
• LATE ELONGATED HYPOCOTYL potentiates resistance conferred by CIRCADIAN CLOCK ASSOCIATED1 to aphid by co-regulating the expression of indole glucosinolate biosynthetic genes.   DOI:  10.1080/15592324.2021.1908708 ;  PMID:  33794732
• BBX19 fine-tunes the circadian rhythm by interacting with PSEUDO-RESPONSE REGULATOR proteins to facilitate their repressive effect on morning-phased clock genes.   DOI:  10.1093/plcell/koab133 ;  PMID:  34164694
• The two clock proteins CCA1 and LHY activate VIN3 transcription during vernalization through the vernalization-responsive cis-element.   DOI:  10.1093/plcell/koab304 ;  PMID:  34931682
• The circadian clock mutant lhy cca1 elf3 paces starch mobilization to dawn despite severely disrupted circadian clock function.   DOI:  10.1093/plphys/kiac226 ;  PMID:  35567528
• WRKY2 and WRKY10 regulate the circadian expression of PIF4 during the day through interactions with CCA1/LHY and phyB.   DOI:  10.1016/j.xplc.2021.100265 ;  PMID:  35529947
• Core circadian clock and light signaling genes brought into genetic linkage across the green lineage.   DOI:  10.1093/plphys/kiac276 ;  PMID:  35674369
• The 5'-3' mRNA Decay Pathway Modulates the Plant Circadian Network in Arabidopsis.   DOI:  10.1093/pcp/pcac126 ;  PMID:  36066193
• Circadian rhythms in the plant host influence rhythmicity of rhizosphere microbiota.   DOI:  10.1186/s12915-022-01430-z ;  PMID:  36266698
• Phytochromes and Their Role in Diurnal Variations of ROS Metabolism and Plant Proteome.   DOI:  10.3390/ijms232214134 ;  PMID:  36430613
• Coordinated regulation of the mitochondrial retrograde response by circadian clock regulators and ANAC017.   DOI:  10.1016/j.xplc.2022.100501 ;  PMID:  36463409
• Characterization of the REVEILLE family in Rosaceae and role of PbLHY in flowering time regulation.   DOI:  10.1186/s12864-023-09144-4 ;  PMID:  36707756
• B-Box proteins BBX28 and BBX29 interplay with PSEUDO-RESPONSE REGULATORS to fine-tune circadian clock in Arabidopsis.   DOI:  10.1111/pce.14648 ;  PMID:  37312621
• Transcriptional dynamics of two seed compartments with opposing roles in Arabidopsis seed germination.   DOI:  10.1104/pp.113.223511 ;  PMID:  23858430
• Amino Acid Export in Developing Arabidopsis Seeds Depends on UmamiT Facilitators.   DOI:  10.1016/j.cub.2015.10.038 ;  PMID:  26628011
• Nitrogen remobilization during leaf senescence: lessons from Arabidopsis to crops.   DOI:  10.1093/jxb/erw365 ;  PMID:  27707774
• Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana.   DOI:  10.1074/jbc.M308435200 ;  PMID:  14576160
• Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method.   DOI:  10.3390/biom10040661 ;  PMID:  32344669
• Proteomic study of the Arabidopsis thaliana chloroplastic envelope membrane utilizing alternatives to traditional two-dimensional electrophoresis.   DOI:  10.1021/pr034025j ;  PMID:  12938931
• Analysis of the Arabidopsis nuclear proteome and its response to cold stress.   DOI:  10.1046/j.1365-313x.2003.01907.x ;  PMID:  14617066
• The Arabidopsis thaliana chloroplast proteome reveals pathway abundance and novel protein functions.   DOI:  10.1016/j.cub.2004.02.039 ;  PMID:  15028209
• Sorting signals, N-terminal modifications and abundance of the chloroplast proteome.   DOI:  10.1371/journal.pone.0001994 ;  PMID:  18431481
• Quantitative proteomics of a chloroplast SRP54 sorting mutant and its genetic interactions with CLPC1 in Arabidopsis.   DOI:  10.1104/pp.108.124545 ;  PMID:  18633119
• Cloning and molecular analyses of the Arabidopsis thaliana plastid pyruvate dehydrogenase subunits.   DOI:  10.1016/s0005-2728(97)00059-5 ;  PMID:  9393637
• Contrapuntal networks of gene expression during Arabidopsis seed filling.   DOI:  10.1105/tpc.000877 ;  PMID:  12084821
• Arabidopsis genes involved in acyl lipid metabolism. A 2003 census of the candidates, a study of the distribution of expressed sequence tags in organs, and a web-based database.   DOI:  10.1104/pp.103.022988 ;  PMID:  12805597
• Disruption of plE2, the gene for the E2 subunit of the plastid pyruvate dehydrogenase complex, in Arabidopsis causes an early embryo lethal phenotype.   DOI:  10.1023/a:1025076805902 ;  PMID:  13677473
• Comparative analysis of expressed sequence tags from Sesamum indicum and Arabidopsis thaliana developing seeds.   DOI:  10.1023/b:plan.0000004304.22770.e9 ;  PMID:  14682612
• Linking protein fractionation with multidimensional monolithic reversed-phase peptide chromatography/mass spectrometry enhances protein identification from complex mixtures even in the presence of abundant proteins.   DOI:  10.1002/rcm.1376 ;  PMID:  15052571
• IAR4, a gene required for auxin conjugate sensitivity in Arabidopsis, encodes a pyruvate dehydrogenase E1alpha homolog.   DOI:  10.1104/pp.104.040519 ;  PMID:  15173569
• Retrograde plastid redox signals in the expression of nuclear genes for chloroplast proteins of Arabidopsis thaliana.   DOI:  10.1074/jbc.M406358200 ;  PMID:  15561727
• Delayed embryo development in the ARABIDOPSIS TREHALOSE-6-PHOSPHATE SYNTHASE 1 mutant is associated with altered cell wall structure, decreased cell division and starch accumulation.   DOI:  10.1111/j.1365-313X.2006.02662.x ;  PMID:  16553896
• WRINKLED1 specifies the regulatory action of LEAFY COTYLEDON2 towards fatty acid metabolism during seed maturation in Arabidopsis.   DOI:  10.1111/j.1365-313X.2007.03092.x ;  PMID:  17419836
• Articulation of three core metabolic processes in Arabidopsis: fatty acid biosynthesis, leucine catabolism and starch metabolism.   DOI:  10.1186/1471-2229-8-76 ;  PMID:  18616834
• LEAFY COTYLEDON1 is a key regulator of fatty acid biosynthesis in Arabidopsis.   DOI:  10.1104/pp.108.126342 ;  PMID:  18689444
• Acyl-lipid metabolism.   DOI:  10.1199/tab.0161 ;  PMID:  23505340
• Analysis of essential Arabidopsis nuclear genes encoding plastid-targeted proteins.   DOI:  10.1371/journal.pone.0073291 ;  PMID:  24023856
• Differential Activation of Partially Redundant Δ9 Stearoyl-ACP Desaturase Genes Is Critical for Omega-9 Monounsaturated Fatty Acid Biosynthesis During Seed Development in Arabidopsis.   DOI:  10.1105/tpc.20.00554 ;  PMID:  32958563
• Analysis of the Arabidopsis cytosolic proteome highlights subcellular partitioning of central plant metabolism.   DOI:  10.1021/pr1009433 ;  PMID:  21166475
• The organization of cytoplasmic ribosomal protein genes in the Arabidopsis genome.   DOI:  6834 ;  PMID:  11598216
• Full-length messenger RNA sequences greatly improve genome annotation.   DOI:  10.1186/gb-2002-3-6-research0029 ;  PMID:  12093376
• The Arabidopsis root transcriptome by serial analysis of gene expression. Gene identification using the genome sequence.   DOI:  10.1104/pp.103.030536 ;  PMID:  14730065
• Proteomic characterization of evolutionarily conserved and variable proteins of Arabidopsis cytosolic ribosomes.   DOI:  10.1104/pp.104.053637 ;  PMID:  15734919
• Analysis of the Arabidopsis cytosolic ribosome proteome provides detailed insights into its components and their post-translational modification.   DOI:  10.1074/mcp.M700052-MCP200 ;  PMID:  17934214
• Site-specific phosphorylation profiling of Arabidopsis proteins by mass spectrometry and peptide chip analysis.   DOI:  10.1021/pr8000173 ;  PMID:  18433157
• Differential phosphorylation of ribosomal proteins in Arabidopsis thaliana plants during day and night.   DOI:  10.1371/journal.pone.0029307 ;  PMID:  22195043
• Genome-wide association study reveals novel players in defense hormone crosstalk in Arabidopsis.   DOI:  10.1111/pce.13357 ;  PMID:  29852537
• Plant cytoplasmic ribosomal proteins: an update on classification, nomenclature, evolution and resources.   DOI:  10.1111/tpj.15667 ;  PMID:  35000252
• A proteomic analysis of Arabidopsis ribosomal phosphoprotein P1A mutant.   DOI:  10.1016/j.jprot.2022.104594 ;  PMID:  35483651
• An updated nomenclature for plant ribosomal protein genes.   DOI:  10.1093/plcell/koac333 ;  PMID:  36423343
• Quantitative phosphoproteomics of early elicitor signaling in Arabidopsis.   DOI:  10.1074/mcp.M600429-MCP200 ;  PMID:  17317660
• Genome-wide comparative analysis of the IQD gene families in Arabidopsis thaliana and Oryza sativa.   DOI:  10.1186/1471-2148-5-72 ;  PMID:  16368012
• Comparison between a coffee single copy chromosomal region and Arabidopsis duplicated counterparts evidenced high level synteny between the coffee genome and the ancestral Arabidopsis genome.   DOI:  10.1007/s11103-007-9191-6 ;  PMID:  17551672
• The IQD Family of Calmodulin-Binding Proteins Links Calcium Signaling to Microtubules, Membrane Subdomains, and the Nucleus.   DOI:  10.1104/pp.16.01743 ;  PMID:  28115582

Sequences: